Wall clock time and date at job start Tue Mar 31 2020 18:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46511 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99899 * 2 1 3 5 5 N 1.46497 * 109.47223 * 119.99700 * 2 1 3 6 6 C 1.34778 * 119.99947 * 60.00221 * 5 2 1 7 7 O 1.21563 * 119.99841 * 359.97438 * 6 5 2 8 8 C 1.47712 * 119.99977 * 180.02562 * 6 5 2 9 9 N 1.31872 * 126.58731 * 359.96910 * 8 6 5 10 10 N 1.28483 * 110.05396 * 179.97438 * 9 8 6 11 11 H 0.96996 * 124.90722 * 180.02562 * 10 9 8 12 12 C 1.35223 * 110.19249 * 0.02562 * 10 9 8 13 13 C 1.35189 * 107.07981 * 359.93154 * 12 10 9 14 14 C 1.50382 * 109.43739 * 179.97438 * 13 12 10 15 15 N 1.46836 * 107.54005 * 0.10862 * 14 13 12 16 16 C 1.34777 * 126.87462 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00082 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00129 * 179.97438 * 16 15 14 19 19 C 1.52992 * 109.47163 * 180.02562 * 18 16 15 20 20 C 1.50703 * 109.47163 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99532 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00079 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99758 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99756 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47157 * 90.00036 * 24 22 20 26 26 H 1.48504 * 109.46667 * 209.99645 * 24 22 20 27 27 H 1.48495 * 109.47421 * 329.99737 * 24 22 20 28 28 C 1.46807 * 106.25315 * 359.93759 * 15 14 13 29 29 H 1.08996 * 109.47338 * 299.99764 * 1 2 3 30 30 H 1.08997 * 109.47344 * 60.00333 * 1 2 3 31 31 H 1.09008 * 109.46778 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47068 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47287 * 299.99389 * 3 2 1 34 34 H 1.08998 * 109.47626 * 59.99962 * 3 2 1 35 35 H 1.08998 * 109.47384 * 299.99864 * 4 2 1 36 36 H 1.09003 * 109.46968 * 60.00052 * 4 2 1 37 37 H 1.09004 * 109.47157 * 179.97438 * 4 2 1 38 38 H 0.97005 * 120.00064 * 240.00396 * 5 2 1 39 39 H 1.09002 * 109.85619 * 240.57739 * 14 13 12 40 40 H 1.09001 * 109.85484 * 119.63432 * 14 13 12 41 41 H 1.09005 * 109.46601 * 300.00169 * 18 16 15 42 42 H 1.09001 * 109.47163 * 59.99771 * 18 16 15 43 43 H 1.09002 * 109.47371 * 299.99885 * 19 18 16 44 44 H 1.09001 * 109.47399 * 60.00142 * 19 18 16 45 45 H 0.96996 * 119.99456 * 180.02562 * 23 22 20 46 46 H 1.08992 * 109.84319 * 119.49235 * 28 15 14 47 47 H 1.08998 * 109.83869 * 240.40836 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 1.6928 -1.9809 1.4095 7 8 0.9936 -2.5715 0.6095 8 6 2.1847 -2.6770 2.6159 9 7 2.9459 -2.1651 3.5633 10 7 3.1832 -3.0500 4.4640 11 1 3.7206 -2.9035 5.2581 12 6 2.5756 -4.2152 4.1451 13 6 1.9281 -4.0181 2.9749 14 6 1.2311 -5.2872 2.5687 15 7 1.5059 -6.2933 3.6022 16 6 1.0690 -7.5681 3.6264 17 8 0.3716 -7.9873 2.7270 18 6 1.4480 -8.4729 4.7704 19 6 0.8274 -9.8546 4.5549 20 6 1.2058 -10.7593 5.6993 21 1 1.8271 -10.3861 6.4999 22 6 0.7587 -12.0634 5.7241 23 7 1.0894 -12.8530 6.7225 24 14 -0.3154 -12.7090 4.3388 25 1 0.5438 -13.2855 3.2737 26 1 -1.2234 -13.7597 4.8652 27 1 -1.1206 -11.5952 3.7766 28 6 2.3526 -5.6332 4.6035 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.5760 -0.2191 1.8347 39 1 1.6151 -5.6292 1.6076 40 1 0.1574 -5.1133 2.4975 41 1 2.5331 -8.5655 4.8163 42 1 1.0795 -8.0505 5.7052 43 1 -0.2578 -9.7624 4.5087 44 1 1.1963 -10.2769 3.6202 45 1 0.7752 -13.7705 6.7397 46 1 1.8509 -5.6345 5.5711 47 1 3.3075 -6.1530 4.6811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271769669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:38 Heat of formation + Delta-G solvation = -7.676340 kcal Electronic energy + Delta-G solvation = -28257.639577 eV Core-core repulsion = 24248.571633 eV Total energy + Delta-G solvation = -4009.067943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.18740 -41.04698 -40.84696 -38.13895 -37.49927 -35.54854 -33.84305 -33.46827 -32.54274 -31.92890 -29.46488 -28.24578 -28.20318 -28.09077 -26.27349 -25.16888 -22.97438 -21.84885 -21.39273 -20.51256 -20.40132 -19.16145 -18.76768 -18.27264 -17.79336 -17.34744 -16.89412 -16.71283 -16.50295 -16.19535 -15.80744 -15.41240 -15.24133 -14.97896 -14.85541 -14.62844 -14.52809 -14.06400 -14.01035 -13.57616 -13.39616 -13.26675 -13.12870 -13.03084 -13.00804 -12.89947 -12.54690 -12.46233 -12.12628 -12.10702 -12.03920 -11.95589 -11.75323 -11.36954 -10.98204 -10.90361 -10.75554 -10.58580 -10.53943 -10.10675 -9.48664 -8.29151 -6.30970 0.32965 0.74277 1.28755 1.34477 1.37354 1.51874 1.56391 1.76499 2.04106 2.22154 2.36867 2.91829 3.07097 3.34745 3.42733 3.76192 3.84452 3.99431 4.08787 4.15243 4.31718 4.36112 4.38307 4.40162 4.51204 4.59166 4.70545 4.71580 4.73120 4.77115 4.86655 4.89594 4.95442 4.98367 5.00358 5.09304 5.22991 5.34709 5.38616 5.39717 5.46448 5.57092 5.62685 5.87241 6.25182 6.33830 6.43123 6.68901 6.75221 7.07294 7.15645 7.34374 8.86013 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025244 B = 0.002112 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.921412 B =13253.698544 C =14150.300604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.163 3.837 3 C -0.147 4.147 4 C -0.163 4.163 5 N -0.698 5.698 6 C 0.599 3.401 7 O -0.554 6.554 8 C 0.004 3.996 9 N -0.230 5.230 10 N -0.322 5.322 11 H 0.470 0.530 12 C 0.003 3.997 13 C -0.197 4.197 14 C 0.187 3.813 15 N -0.618 5.618 16 C 0.541 3.459 17 O -0.578 6.578 18 C -0.105 4.105 19 C 0.001 3.999 20 C -0.523 4.523 21 H 0.058 0.942 22 C 0.016 3.984 23 N -0.941 5.941 24 Si 0.932 3.068 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.263 1.263 28 C 0.185 3.815 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.009 0.991 44 H 0.008 0.992 45 H 0.266 0.734 46 H 0.121 0.879 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 34.415 -7.326 36.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.221 4.221 5 N -0.351 5.351 6 C 0.384 3.616 7 O -0.431 6.431 8 C -0.156 4.156 9 N -0.068 5.068 10 N -0.040 5.040 11 H 0.321 0.679 12 C -0.126 4.126 13 C -0.208 4.208 14 C 0.063 3.937 15 N -0.354 5.354 16 C 0.333 3.667 17 O -0.456 6.456 18 C -0.144 4.144 19 C -0.037 4.037 20 C -0.561 4.561 21 H 0.076 0.924 22 C -0.182 4.182 23 N -0.582 5.582 24 Si 0.757 3.243 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.187 1.187 28 C 0.061 3.939 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.075 0.925 46 H 0.139 0.861 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.318 34.521 -8.040 36.193 hybrid contribution -0.516 -1.280 -0.135 1.387 sum 6.802 33.242 -8.175 34.901 Atomic orbital electron populations 1.22210 0.94678 1.02394 1.02825 1.20560 0.94186 0.93338 0.84072 1.22048 1.02211 0.91972 1.04243 1.22209 1.01188 1.01299 0.97408 1.45976 1.52891 1.10454 1.25763 1.17013 0.79436 0.82086 0.83071 1.90770 1.38855 1.67256 1.46190 1.21146 1.04377 0.92223 0.97862 1.73690 1.16637 1.17236 0.99188 1.42511 1.37428 1.04044 1.19983 0.67929 1.21680 1.00259 0.92910 0.97764 1.20561 1.06155 0.94958 0.99132 1.19220 0.99050 0.83864 0.91556 1.48168 1.52280 1.10310 1.24632 1.21046 0.78104 0.79691 0.87903 1.90686 1.39786 1.74404 1.40764 1.21517 1.03783 0.93556 0.95582 1.19281 0.96073 0.92845 0.95550 1.21393 1.31498 0.96005 1.07231 0.92403 1.25732 0.97246 0.97472 0.97775 1.70008 1.47534 1.07551 1.33115 0.85928 0.79811 0.78459 0.80121 1.19540 1.20529 1.18743 1.19915 0.97684 0.83888 0.92368 0.92217 0.90131 0.93425 0.90953 0.89409 0.90950 0.93422 0.90136 0.92211 0.74797 0.91701 0.91722 0.86918 0.86940 0.97222 0.97334 0.92463 0.86103 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.40 71.98 0.60 -1.98 16 2 C 0.16 2.23 1.06 3.60 0.00 2.23 16 3 C -0.15 -0.97 8.59 71.98 0.62 -0.35 16 4 C -0.16 -2.58 8.40 71.98 0.60 -1.98 16 5 N -0.70 -11.00 5.10 -425.90 -2.17 -13.17 16 6 C 0.60 14.00 7.24 86.75 0.63 14.63 16 7 O -0.55 -16.89 13.13 -3.91 -0.05 -16.94 16 8 C 0.00 0.08 7.13 42.37 0.30 0.38 16 9 N -0.23 -3.62 11.93 -48.35 -0.58 -4.20 16 10 N -0.32 -3.56 6.84 -47.94 -0.33 -3.89 16 11 H 0.47 0.97 8.96 -219.99 -1.97 -1.00 16 12 C 0.00 0.05 8.21 41.33 0.34 0.39 16 13 C -0.20 -4.70 6.92 -19.94 -0.14 -4.84 16 14 C 0.19 5.45 6.93 85.47 0.59 6.04 16 15 N -0.62 -17.07 3.35 -829.47 -2.78 -19.86 16 16 C 0.54 19.49 7.88 87.66 0.69 20.19 16 17 O -0.58 -26.62 16.37 -3.05 -0.05 -26.67 16 18 C -0.10 -3.72 4.91 29.85 0.15 -3.57 16 19 C 0.00 0.03 3.33 29.85 0.10 0.12 16 20 C -0.52 -29.19 9.66 25.60 0.25 -28.95 16 21 H 0.06 3.33 7.99 -2.91 -0.02 3.31 16 22 C 0.02 0.91 5.47 84.66 0.46 1.37 16 23 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 24 Si 0.93 46.56 27.47 68.60 1.88 48.44 16 25 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 26 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.26 -13.16 6.54 99.48 0.65 -12.51 16 28 C 0.19 3.04 6.58 85.57 0.56 3.60 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.10 6.16 -2.38 -0.01 1.08 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.05 1.10 6.16 -2.39 -0.01 1.08 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.41 4.64 8.20 -92.70 -0.76 3.88 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 42 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.01 0.49 7.16 -2.39 -0.02 0.47 16 44 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 46 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -82.19 385.94 0.21 -81.98 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -1.78 Total: 4.65 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.77 Total: 7.28 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -5.56 Total: -98.74 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.10 Total: -43.61 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -82.19 0.21 -81.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271769669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.308 kcal (2) G-P(sol) polarization free energy of solvation -82.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds