Wall clock time and date at job start Tue Mar 31 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.46964 * 2 1 4 4 C 1.52999 * 109.47303 * 120.00260 * 2 1 3 5 5 H 1.08996 * 109.47392 * 299.99929 * 4 2 1 6 6 C 1.53003 * 109.46938 * 60.00119 * 4 2 1 7 7 N 1.46502 * 109.47009 * 175.00044 * 6 4 2 8 8 C 1.34779 * 120.00273 * 179.97438 * 7 6 4 9 9 O 1.21587 * 119.99526 * 359.97438 * 8 7 6 10 10 C 1.47528 * 120.00335 * 180.02562 * 8 7 6 11 11 C 1.39805 * 120.98072 * 0.02562 * 10 8 7 12 12 N 1.32183 * 118.98096 * 179.97438 * 11 10 8 13 13 C 1.31934 * 121.14508 * 359.97438 * 12 11 10 14 14 C 1.50690 * 118.90710 * 180.02562 * 13 12 11 15 15 C 1.53006 * 117.49828 * 8.74758 * 14 13 12 16 16 C 1.53002 * 117.50025 * 300.08865 * 14 13 12 17 17 N 1.31731 * 122.19006 * 359.73560 * 13 12 11 18 18 C 1.32764 * 120.87523 * 0.53712 * 17 13 12 19 19 O 1.35279 * 120.61914 * 179.75924 * 18 17 13 20 20 N 1.46500 * 109.47133 * 179.97438 * 4 2 1 21 21 C 1.36933 * 119.99918 * 85.00276 * 20 4 2 22 22 H 1.08007 * 119.99747 * 0.02562 * 21 20 4 23 23 C 1.38814 * 120.00378 * 179.97438 * 21 20 4 24 24 N 1.31623 * 119.99498 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00235 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47246 * 89.99851 * 25 23 21 27 27 H 1.48502 * 109.47525 * 210.00166 * 25 23 21 28 28 H 1.48500 * 109.46981 * 330.00008 * 25 23 21 29 29 H 1.09004 * 109.47418 * 299.99410 * 1 2 3 30 30 H 1.08997 * 109.47797 * 60.00127 * 1 2 3 31 31 H 1.09001 * 109.47506 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46962 * 239.99969 * 2 1 3 33 33 H 1.09005 * 109.46668 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47424 * 300.00269 * 3 2 1 35 35 H 1.08996 * 109.46911 * 60.00573 * 3 2 1 36 36 H 1.09000 * 109.47585 * 55.00057 * 6 4 2 37 37 H 1.09007 * 109.47163 * 294.99474 * 6 4 2 38 38 H 0.97003 * 120.00063 * 359.97438 * 7 6 4 39 39 H 1.08010 * 120.50817 * 359.95790 * 11 10 8 40 40 H 1.09002 * 115.55480 * 154.41510 * 14 13 12 41 41 H 1.09003 * 117.49462 * 359.97438 * 15 14 13 42 42 H 1.09000 * 117.49856 * 145.01888 * 15 14 13 43 43 H 1.09003 * 117.50172 * 214.97825 * 16 14 13 44 44 H 1.09002 * 117.49571 * 359.97438 * 16 14 13 45 45 H 0.96700 * 114.00116 * 269.71859 * 19 18 17 46 46 H 0.97000 * 119.99892 * 265.00232 * 20 4 2 47 47 H 0.97002 * 119.99313 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1142 -2.8884 2.3805 8 6 1.8054 -4.1846 2.5825 9 8 1.0415 -4.7526 1.8259 10 6 2.3932 -4.9141 3.7221 11 6 3.2725 -4.2809 4.6055 12 7 3.7756 -4.9720 5.6137 13 6 3.4612 -6.2403 5.7958 14 6 4.0639 -6.9799 6.9622 15 6 4.8483 -6.1607 7.9892 16 6 5.5892 -7.0854 7.0200 17 7 2.6337 -6.8801 4.9951 18 6 2.0841 -6.2680 3.9531 19 8 1.2387 -6.9314 3.1314 20 7 3.5050 -0.7218 1.2488 21 6 4.1902 0.3528 1.7498 22 1 3.6505 1.2005 2.1455 23 6 5.5783 0.3522 1.7500 24 7 6.2359 -0.6816 1.2691 25 14 6.5129 1.8183 2.4327 26 1 6.7601 1.6161 3.8829 27 1 7.8106 1.9522 1.7233 28 1 5.7109 3.0523 2.2346 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9562 0.8900 36 1 1.8184 -2.6511 0.3177 37 1 0.4437 -2.1652 1.3387 38 1 2.7233 -2.4352 2.9842 39 1 3.5367 -3.2429 4.4662 40 1 3.4865 -7.8281 7.3302 41 1 4.9287 -5.0867 7.8207 42 1 4.7872 -6.4701 9.0325 43 1 6.0152 -8.0028 7.4263 44 1 6.1567 -6.6201 6.2141 45 1 1.6750 -7.3662 2.3859 46 1 3.9896 -1.4833 0.8937 47 1 7.2060 -0.6822 1.2696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271909047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:46 Heat of formation + Delta-G solvation = 5.576139 kcal Electronic energy + Delta-G solvation = -28935.074554 eV Core-core repulsion = 24926.581281 eV Total energy + Delta-G solvation = -4008.493272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53229 -39.34656 -38.06994 -37.18600 -36.83513 -34.10131 -33.42819 -33.18353 -31.64982 -30.38251 -28.14609 -26.28779 -25.82390 -24.45484 -23.76909 -22.56407 -22.24144 -21.59004 -20.49787 -19.44508 -18.79610 -18.24182 -17.82583 -17.01426 -16.62441 -15.75698 -15.45904 -15.18189 -15.02227 -14.59588 -14.48703 -14.15931 -13.99217 -13.84768 -13.50039 -13.33185 -12.94178 -12.48501 -12.27746 -12.23149 -12.07558 -11.73338 -11.66769 -11.39653 -11.17337 -11.07527 -11.01182 -10.86026 -10.73746 -10.69334 -10.66075 -10.35160 -10.14716 -10.02969 -9.69759 -9.59561 -9.53538 -9.39321 -8.98734 -8.72886 -7.10579 -5.88713 -3.18356 0.24578 0.78744 2.80619 3.00693 3.33675 3.36068 3.41986 3.42956 3.43483 3.61046 3.89534 4.11360 4.48250 4.58527 4.61494 4.70617 4.77031 4.88021 5.13172 5.27707 5.31444 5.36872 5.43946 5.47539 5.58320 5.59133 5.69890 5.83216 5.84035 5.93477 5.97004 6.04003 6.12528 6.19086 6.32983 6.38514 6.47933 6.57246 6.59256 6.67289 6.81398 7.01576 7.25191 7.27058 7.60945 7.71988 7.83801 8.28313 8.36042 9.40783 9.94375 10.30430 11.32860 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009768 B = 0.003612 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.837616 B = 7750.831574 C =10136.908157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.115 3.885 7 N -0.705 5.705 8 C 0.565 3.435 9 O -0.532 6.532 10 C -0.262 4.262 11 C 0.208 3.792 12 N -0.523 5.523 13 C 0.389 3.611 14 C -0.109 4.109 15 C -0.150 4.150 16 C -0.153 4.153 17 N -0.542 5.542 18 C 0.419 3.581 19 O -0.454 6.454 20 N -0.722 5.722 21 C -0.239 4.239 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.902 3.098 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.408 0.592 39 H 0.183 0.817 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.412 0.588 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 -9.645 7.676 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.009 4.009 7 N -0.357 5.357 8 C 0.349 3.651 9 O -0.410 6.410 10 C -0.272 4.272 11 C 0.042 3.958 12 N -0.239 5.239 13 C 0.124 3.876 14 C -0.129 4.129 15 C -0.188 4.188 16 C -0.191 4.191 17 N -0.267 5.267 18 C 0.231 3.769 19 O -0.262 6.262 20 N -0.363 5.363 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.207 1.207 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.245 0.755 39 H 0.199 0.801 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.274 0.726 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.486 -10.178 8.244 14.616 hybrid contribution 0.882 1.074 -0.744 1.576 sum -5.603 -9.104 7.500 13.059 Atomic orbital electron populations 1.21948 0.96827 1.00992 1.00991 1.21722 0.93556 0.97824 0.99964 1.21817 1.04215 0.94581 0.99037 1.20564 0.86419 0.90980 0.96179 0.92742 1.21803 0.97440 0.93222 0.88484 1.45882 1.48316 1.10366 1.31103 1.17527 0.81504 0.82127 0.83922 1.90786 1.35723 1.67808 1.46658 1.22060 1.05390 0.97448 1.02254 1.23634 0.86354 1.00221 0.85613 1.68137 1.26592 1.08007 1.21123 1.22124 0.87202 0.86551 0.91771 1.20712 0.95024 1.01992 0.95195 1.23087 1.01125 0.99592 0.94997 1.23034 0.91032 1.02192 1.02829 1.67766 1.11600 1.41021 1.06277 1.19380 0.83340 0.86882 0.87338 1.84628 1.31300 1.70466 1.39803 1.42474 0.98700 1.21278 1.73898 1.19194 0.88756 0.96478 1.32582 0.90862 1.24721 0.96462 0.97683 1.01652 1.69659 1.06986 1.29814 1.51180 0.86277 0.79614 0.82316 0.78501 1.21690 1.21874 1.20723 0.93169 0.93522 0.93023 0.91857 0.89478 0.94977 0.94046 0.91586 0.91260 0.75496 0.80057 0.85086 0.86798 0.88006 0.87759 0.88193 0.72616 0.78124 0.93450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 37.16 0.33 -1.68 16 2 C -0.11 -1.76 2.69 -90.62 -0.24 -2.01 16 3 C -0.14 -2.41 8.26 37.15 0.31 -2.10 16 4 C 0.17 2.92 2.18 -67.93 -0.15 2.77 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.82 4.73 -4.04 -0.02 1.80 16 7 N -0.70 -11.02 5.34 -61.35 -0.33 -11.35 16 8 C 0.56 9.16 7.78 -12.47 -0.10 9.06 16 9 O -0.53 -9.80 15.32 -15.86 -0.24 -10.05 16 10 C -0.26 -3.86 5.92 -104.56 -0.62 -4.48 16 11 C 0.21 2.87 10.80 -16.81 -0.18 2.68 16 12 N -0.52 -7.22 9.31 -10.44 -0.10 -7.31 16 13 C 0.39 5.18 7.31 -157.13 -1.15 4.04 16 14 C -0.11 -1.11 6.23 -91.77 -0.57 -1.68 16 15 C -0.15 -1.30 10.01 -26.69 -0.27 -1.56 16 16 C -0.15 -1.32 10.24 -26.69 -0.27 -1.59 16 17 N -0.54 -7.75 10.34 -10.47 -0.11 -7.85 16 18 C 0.42 6.14 7.85 -16.19 -0.13 6.01 16 19 O -0.45 -6.23 11.81 -38.67 -0.46 -6.68 16 20 N -0.72 -15.42 4.44 -53.43 -0.24 -15.66 16 21 C -0.24 -5.75 7.57 -15.06 -0.11 -5.86 16 22 H 0.07 1.74 7.40 -52.48 -0.39 1.35 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -25.68 13.06 55.49 0.72 -24.95 16 25 Si 0.90 20.81 29.55 -169.99 -5.02 15.78 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.79 6.01 -51.93 -0.31 1.48 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.04 6.71 -51.93 -0.35 0.70 16 38 H 0.41 6.30 6.27 -40.82 -0.26 6.04 16 39 H 0.18 2.26 6.53 -52.48 -0.34 1.92 16 40 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.11 1.14 7.53 -51.93 -0.39 0.75 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.41 3.88 9.06 45.56 0.41 4.29 16 46 H 0.38 9.06 7.80 -40.82 -0.32 8.75 16 47 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -30.06 388.04 -9.26 -39.32 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -6.07 Total: 17.84 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -3.27 Total: 5.08 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: -0.05 Total: -67.13 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.70 Total: -16.73 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.06 -9.26 -39.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271909047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.894 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds