Wall clock time and date at job start Tue Mar 31 2020 18:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 7 7 C 1.53006 * 109.46846 * 185.00166 * 6 4 2 8 8 N 1.46497 * 109.46795 * 179.97438 * 7 6 4 9 9 C 1.34778 * 119.99736 * 179.97438 * 8 7 6 10 10 O 1.21523 * 120.00213 * 0.02562 * 9 8 7 11 11 C 1.48168 * 120.00147 * 180.02562 * 9 8 7 12 12 C 1.39240 * 119.65875 * 180.02562 * 11 9 8 13 13 C 1.39758 * 118.90239 * 180.02562 * 12 11 9 14 14 C 1.48146 * 120.88659 * 179.97438 * 13 12 11 15 15 N 1.34778 * 119.99911 * 179.97438 * 14 13 12 16 16 O 1.21516 * 120.00474 * 0.02562 * 14 13 12 17 17 C 1.39796 * 118.22544 * 359.97438 * 13 12 11 18 18 C 1.38508 * 119.18738 * 359.97438 * 17 13 12 19 19 N 1.31459 * 121.03291 * 359.72551 * 18 17 13 20 20 N 1.46500 * 109.47007 * 179.97438 * 4 2 1 21 21 C 1.36933 * 119.99983 * 84.99832 * 20 4 2 22 22 H 1.08002 * 120.00189 * 0.02562 * 21 20 4 23 23 C 1.38812 * 120.00422 * 179.97438 * 21 20 4 24 24 N 1.31623 * 119.99438 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00488 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47149 * 89.99897 * 25 23 21 27 27 H 1.48501 * 109.46970 * 210.00013 * 25 23 21 28 28 H 1.48501 * 109.47193 * 329.99772 * 25 23 21 29 29 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 30 30 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46716 * 240.00370 * 2 1 3 33 33 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 35 35 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 36 36 H 1.09002 * 109.47069 * 304.99600 * 6 4 2 37 37 H 1.08991 * 109.47625 * 64.99919 * 6 4 2 38 38 H 1.09002 * 109.46824 * 299.99583 * 7 6 4 39 39 H 1.09001 * 109.47241 * 59.99481 * 7 6 4 40 40 H 0.96995 * 120.00714 * 0.02562 * 8 7 6 41 41 H 1.08003 * 120.54902 * 0.02562 * 12 11 9 42 42 H 0.96997 * 119.99851 * 0.02562 * 15 14 13 43 43 H 0.97004 * 119.99956 * 180.02562 * 15 14 13 44 44 H 1.08000 * 120.40912 * 179.97438 * 17 13 12 45 45 H 1.08000 * 119.48263 * 180.02562 * 18 17 13 46 46 H 0.96997 * 120.00274 * 264.99726 * 20 4 2 47 47 H 0.97001 * 120.00131 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9349 -2.8479 2.5564 8 7 1.4460 -4.2289 2.5565 9 6 1.6868 -5.0289 3.6142 10 8 2.3091 -4.6045 4.5679 11 6 1.1929 -6.4258 3.6142 12 6 1.4453 -7.2459 4.7108 13 6 0.9726 -8.5610 4.6939 14 6 1.2166 -9.4716 5.8367 15 7 0.7521 -10.7363 5.8017 16 8 1.8346 -9.0780 6.8061 17 6 0.2635 -8.9942 3.5697 18 6 0.0554 -8.1131 2.5215 19 7 0.5088 -6.8802 2.5722 20 7 3.5050 -0.7218 1.2488 21 6 4.1902 0.3528 1.7497 22 1 3.6506 1.2005 2.1454 23 6 5.5783 0.3522 1.7498 24 7 6.2359 -0.6816 1.2689 25 14 6.5130 1.8177 2.4338 26 1 6.7602 1.6143 3.8838 27 1 7.8107 1.9520 1.7244 28 1 5.7111 3.0520 2.2367 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 0.4437 -2.1651 1.1596 37 1 1.9645 -2.7028 0.4073 38 1 3.0212 -2.8466 2.6459 39 1 1.5003 -2.3089 3.3983 40 1 0.9497 -4.5679 1.7953 41 1 1.9973 -6.8718 5.5605 42 1 0.2584 -11.0504 5.0280 43 1 0.9115 -11.3324 6.5501 44 1 -0.1174 -10.0035 3.5192 45 1 -0.4922 -8.4426 1.6509 46 1 3.9897 -1.4833 0.8937 47 1 7.2059 -0.6820 1.2687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283472919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:41 Heat of formation + Delta-G solvation = -67.382952 kcal Electronic energy + Delta-G solvation = -27910.412205 eV Core-core repulsion = 23898.755189 eV Total energy + Delta-G solvation = -4011.657016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.98586 -40.70173 -39.73598 -38.92080 -36.14280 -35.20927 -34.89513 -33.57983 -32.88811 -32.35707 -31.08414 -27.79398 -27.12958 -26.28386 -25.34212 -24.40499 -22.98450 -22.46130 -21.43885 -20.64720 -19.71419 -19.08635 -18.41764 -18.16835 -17.15198 -16.99463 -16.87493 -16.61066 -16.28587 -16.07156 -15.85240 -15.72618 -15.30218 -15.19316 -15.11852 -14.98908 -14.65648 -14.46148 -14.23082 -13.49856 -13.19955 -13.13110 -12.89981 -12.87904 -12.64485 -12.46731 -12.19460 -12.00383 -11.92081 -11.76786 -11.68339 -11.50100 -11.30039 -11.20583 -11.16243 -10.81123 -10.80684 -10.69567 -10.46675 -10.10415 -8.89606 -7.87691 -5.12134 -0.68066 -0.31796 1.40747 1.45494 1.47701 1.54267 1.87627 1.91133 2.29420 2.59513 2.74878 3.01165 3.45561 3.53041 3.67485 3.74210 3.80251 3.91486 3.94713 4.14017 4.22148 4.28876 4.42814 4.53840 4.57525 4.63515 4.69417 4.79274 4.81379 4.83433 4.98873 5.05404 5.14936 5.24732 5.26537 5.35419 5.38217 5.42158 5.47160 5.59201 5.73248 5.74757 5.82576 6.27320 6.32787 6.35028 6.66421 7.08681 7.14772 7.41427 8.18851 8.40415 9.36148 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014188 B = 0.002353 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.037916 B =11894.341513 C =13395.827151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C -0.138 4.138 4 C 0.178 3.822 5 H 0.040 0.960 6 C -0.119 4.119 7 C 0.130 3.870 8 N -0.690 5.690 9 C 0.556 3.444 10 O -0.578 6.578 11 C 0.064 3.936 12 C -0.079 4.079 13 C -0.108 4.108 14 C 0.562 3.438 15 N -0.815 5.815 16 O -0.583 6.583 17 C -0.084 4.084 18 C 0.105 3.895 19 N -0.449 5.449 20 N -0.731 5.731 21 C -0.209 4.209 22 H 0.075 0.925 23 C -0.082 4.082 24 N -0.971 5.971 25 Si 0.957 3.043 26 H -0.296 1.296 27 H -0.299 1.299 28 H -0.268 1.268 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.422 0.578 41 H 0.126 0.874 42 H 0.423 0.577 43 H 0.418 0.582 44 H 0.204 0.796 45 H 0.222 0.778 46 H 0.371 0.629 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.588 -23.190 -1.790 32.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.070 3.930 5 H 0.058 0.942 6 C -0.157 4.157 7 C 0.007 3.993 8 N -0.341 5.341 9 C 0.341 3.659 10 O -0.458 6.458 11 C -0.072 4.072 12 C -0.102 4.102 13 C -0.119 4.119 14 C 0.347 3.653 15 N -0.380 5.380 16 O -0.463 6.463 17 C -0.105 4.105 18 C -0.056 4.056 19 N -0.161 5.161 20 N -0.370 5.370 21 C -0.341 4.341 22 H 0.093 0.907 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.787 3.213 26 H -0.224 1.224 27 H -0.226 1.226 28 H -0.192 1.192 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.256 0.744 43 H 0.251 0.749 44 H 0.221 0.779 45 H 0.238 0.762 46 H 0.203 0.797 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -21.864 -21.685 -1.194 30.817 hybrid contribution 1.503 -0.110 0.947 1.780 sum -20.361 -21.794 -0.247 29.827 Atomic orbital electron populations 1.21856 0.93627 1.02436 1.01719 1.21626 0.96098 0.96175 0.98706 1.21763 1.01533 0.96333 0.99926 1.20457 0.83166 0.93509 0.95903 0.94176 1.22000 1.02733 0.95574 0.95368 1.21235 0.98508 0.80390 0.99185 1.45732 1.55843 1.12444 1.20058 1.18372 0.79383 0.85353 0.82783 1.90818 1.42475 1.75905 1.36564 1.20655 1.00078 0.93973 0.92450 1.22095 0.96210 0.93608 0.98250 1.20333 1.01178 0.93539 0.96846 1.18224 0.78294 0.83364 0.85451 1.43439 1.57763 1.11358 1.25490 1.90870 1.42540 1.76942 1.35938 1.23148 0.93185 1.03528 0.90606 1.23770 0.95492 0.86615 0.99682 1.67444 1.06556 1.18450 1.23695 1.42629 1.01182 1.19830 1.73361 1.19488 0.88914 0.96483 1.29248 0.90690 1.25390 0.97695 1.00161 1.04061 1.69800 1.06219 1.31798 1.54515 0.85364 0.78237 0.80360 0.77290 1.22437 1.22623 1.19247 0.92914 0.92295 0.91023 0.92724 0.93602 0.93043 0.94088 0.87519 0.90976 0.94138 0.92655 0.74009 0.85586 0.74380 0.74877 0.77902 0.76172 0.79718 0.94565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.85 71.98 0.64 -2.63 16 2 C -0.10 -3.40 2.69 -10.80 -0.03 -3.43 16 3 C -0.14 -4.96 8.26 71.98 0.59 -4.37 16 4 C 0.18 6.62 2.02 44.99 0.09 6.71 16 5 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 6 C -0.12 -3.51 4.65 30.60 0.14 -3.37 16 7 C 0.13 4.59 5.56 86.38 0.48 5.07 16 8 N -0.69 -20.60 5.54 -465.64 -2.58 -23.18 16 9 C 0.56 19.10 7.81 86.88 0.68 19.78 16 10 O -0.58 -25.56 16.32 -3.79 -0.06 -25.62 16 11 C 0.06 1.70 6.75 41.90 0.28 1.98 16 12 C -0.08 -2.07 9.20 22.88 0.21 -1.86 16 13 C -0.11 -1.77 5.91 -19.90 -0.12 -1.89 16 14 C 0.56 9.71 8.07 86.88 0.70 10.41 16 15 N -0.81 -3.88 8.83 -175.40 -1.55 -5.43 16 16 O -0.58 -17.03 17.28 -3.77 -0.07 -17.09 16 17 C -0.08 -0.47 9.62 22.71 0.22 -0.25 16 18 C 0.10 0.83 11.17 84.81 0.95 1.78 16 19 N -0.45 -8.20 9.51 -185.08 -1.76 -9.96 16 20 N -0.73 -35.73 4.45 -322.94 -1.44 -37.17 16 21 C -0.21 -11.46 7.57 84.03 0.64 -10.83 16 22 H 0.08 3.99 7.40 -2.91 -0.02 3.97 16 23 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 24 N -0.97 -61.11 13.06 21.65 0.28 -60.82 16 25 Si 0.96 48.04 29.55 68.60 2.03 50.07 16 26 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 27 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.39 6.32 -2.39 -0.02 1.38 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 2.02 6.01 -2.39 -0.01 2.00 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 2.37 6.17 -2.39 -0.01 2.36 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.82 7.75 -2.39 -0.02 1.80 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.42 9.77 7.80 -92.71 -0.72 9.05 16 41 H 0.13 4.13 7.33 -2.91 -0.02 4.11 16 42 H 0.42 -1.75 6.96 -92.71 -0.65 -2.39 16 43 H 0.42 1.31 8.93 -92.71 -0.83 0.48 16 44 H 0.20 -1.33 6.53 -2.91 -0.02 -1.34 16 45 H 0.22 -0.42 8.06 -2.91 -0.02 -0.44 16 46 H 0.37 19.88 7.80 -92.71 -0.72 19.16 16 47 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -88.57 389.93 -1.08 -89.65 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: -1.87 Total: 26.79 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 5.94 Total: 12.78 kcal Atomic # 7 Polarization: -129.52 SS G_CDS: -7.05 Total: -136.57 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.13 Total: -42.71 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -88.57 -1.08 -89.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283472919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.262 kcal (2) G-P(sol) polarization free energy of solvation -88.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds