Wall clock time and date at job start Tue Mar 31 2020 17:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.53000 * 109.47479 * 239.99864 * 2 1 3 5 5 C 1.50700 * 109.47086 * 119.99572 * 2 1 3 6 6 C 1.33000 * 119.99868 * 65.85547 * 5 2 1 7 7 C 1.47093 * 120.00002 * 358.92385 * 6 5 2 8 8 O 1.21619 * 119.99890 * 354.42939 * 7 6 5 9 9 N 1.34775 * 120.00229 * 174.42695 * 7 6 5 10 10 C 1.46500 * 120.00041 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46883 * 179.97438 * 10 9 7 12 12 N 1.31801 * 119.09596 * 90.00205 * 11 10 9 13 13 C 1.32788 * 120.71763 * 179.97438 * 12 11 10 14 14 O 1.35520 * 120.50884 * 179.97438 * 13 12 11 15 15 C 1.39415 * 118.98112 * 0.02562 * 13 12 11 16 16 C 1.38196 * 118.34689 * 359.97438 * 15 13 12 17 17 C 1.50704 * 120.40947 * 180.02562 * 16 15 13 18 18 N 1.46497 * 109.47389 * 95.00126 * 17 16 15 19 19 C 1.36936 * 120.00249 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99619 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00079 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46887 * 90.00082 * 23 21 19 25 25 H 1.48494 * 109.47103 * 210.00244 * 23 21 19 26 26 H 1.48503 * 109.47102 * 330.00470 * 23 21 19 27 27 N 1.31760 * 119.09805 * 269.73385 * 11 10 9 28 28 H 1.09006 * 109.47189 * 329.72689 * 1 2 3 29 29 H 1.09007 * 109.46748 * 89.72179 * 1 2 3 30 30 H 1.08998 * 109.47036 * 209.72342 * 1 2 3 31 31 H 1.08999 * 109.47638 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47385 * 299.99610 * 3 2 1 33 33 H 1.09002 * 109.47607 * 59.99799 * 3 2 1 34 34 H 1.09005 * 109.46681 * 263.11914 * 4 2 1 35 35 H 1.08999 * 109.46828 * 23.11359 * 4 2 1 36 36 H 1.08996 * 109.46930 * 143.11966 * 4 2 1 37 37 H 1.07998 * 120.00388 * 245.85744 * 5 2 1 38 38 H 1.07997 * 119.99989 * 178.92982 * 6 5 2 39 39 H 0.96998 * 119.99769 * 359.97438 * 9 7 6 40 40 H 1.09002 * 109.47350 * 60.00545 * 10 9 7 41 41 H 1.08994 * 109.47611 * 300.00094 * 10 9 7 42 42 H 0.96704 * 113.99740 * 90.00258 * 14 13 12 43 43 H 1.07997 * 120.83203 * 180.02562 * 15 13 12 44 44 H 1.09005 * 109.46612 * 215.00044 * 17 16 15 45 45 H 1.08994 * 109.46937 * 334.99626 * 17 16 15 46 46 H 0.97006 * 119.99699 * 359.97438 * 18 17 16 47 47 H 0.96995 * 120.00159 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.8098 -2.0125 1.3840 7 6 1.0529 -2.7546 0.3642 8 8 0.5441 -2.1607 -0.5673 9 7 0.9233 -4.0925 0.4618 10 6 0.1699 -4.8316 -0.5542 11 6 0.1762 -6.2999 -0.2151 12 7 -0.7854 -6.7865 0.5438 13 6 -0.8116 -8.0754 0.8621 14 8 -1.8020 -8.5712 1.6431 15 6 0.1960 -8.9105 0.3815 16 6 1.1842 -8.3577 -0.4107 17 6 2.2953 -9.2178 -0.9556 18 7 1.9504 -9.6622 -2.3083 19 6 2.8155 -10.4601 -3.0083 20 1 3.7522 -10.7615 -2.5633 21 6 2.4884 -10.8816 -4.2898 22 7 1.3469 -10.5138 -4.8323 23 14 3.6682 -11.9706 -5.2445 24 1 3.3614 -13.3966 -4.9653 25 1 3.5185 -11.7075 -6.6982 26 1 5.0625 -11.6737 -4.8286 27 7 1.1397 -7.0630 -0.6896 28 1 -0.3634 0.8876 0.5181 29 1 -0.3633 0.0050 -1.0277 30 1 -0.3633 -0.8924 0.5095 31 1 3.1300 1.4426 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 2.2773 -1.7556 -1.0001 35 1 1.2701 -0.7007 -2.0204 36 1 2.9362 -0.2214 -1.6169 37 1 2.5730 -0.1620 1.9877 38 1 2.1847 -2.5251 2.2575 39 1 1.3294 -4.5662 1.2045 40 1 0.6327 -4.6825 -1.5298 41 1 -0.8576 -4.4687 -0.5803 42 1 -2.5730 -8.8831 1.1498 43 1 0.2037 -9.9635 0.6216 44 1 3.2194 -8.6405 -0.9873 45 1 2.4315 -10.0865 -0.3115 46 1 1.1091 -9.3911 -2.7080 47 1 1.1185 -10.8079 -5.7279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316715405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:58 Heat of formation + Delta-G solvation = 32.616272 kcal Electronic energy + Delta-G solvation = -28122.341498 eV Core-core repulsion = 24115.020773 eV Total energy + Delta-G solvation = -4007.320724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28619 -40.60914 -37.87191 -37.18370 -35.54605 -34.53387 -33.14813 -32.22387 -31.54623 -30.60589 -27.74151 -27.30103 -27.24289 -26.58471 -23.81753 -23.48175 -22.55711 -21.48858 -20.91017 -19.05490 -18.62978 -17.78367 -17.28449 -17.07079 -16.41106 -15.74309 -15.63365 -15.30745 -15.19753 -14.85776 -14.33234 -14.15743 -14.10764 -13.82990 -13.65770 -13.34606 -13.28089 -13.03369 -12.72221 -12.67311 -12.31717 -12.18357 -11.91416 -11.89820 -11.16292 -11.08246 -11.02562 -10.92179 -10.88242 -10.69070 -10.63667 -10.40883 -10.16861 -9.86025 -9.65792 -9.57690 -9.35417 -9.20969 -9.00970 -8.93603 -7.08457 -5.86083 -3.17722 0.75132 0.98553 1.20669 3.02788 3.16259 3.19541 3.38938 3.44199 3.46272 3.78681 3.88636 4.32525 4.43988 4.54729 4.55846 4.83483 4.90801 4.96308 5.10205 5.20622 5.22826 5.28917 5.35256 5.46533 5.51544 5.58757 5.62196 5.73069 5.75892 5.81809 5.84975 5.93687 5.99721 6.09366 6.10402 6.18220 6.28163 6.31636 6.34019 6.43387 6.43573 6.53477 7.00291 7.26677 7.38261 7.59933 8.08812 8.13091 8.29569 9.41867 9.92396 10.27906 11.36271 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002454 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.018375 B =11406.535508 C =13101.200493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.042 4.042 3 C -0.142 4.142 4 C -0.115 4.115 5 C -0.048 4.048 6 C -0.222 4.222 7 C 0.532 3.468 8 O -0.512 6.512 9 N -0.717 5.717 10 C 0.198 3.802 11 C 0.316 3.684 12 N -0.533 5.533 13 C 0.354 3.646 14 O -0.478 6.478 15 C -0.218 4.218 16 C 0.200 3.800 17 C 0.196 3.804 18 N -0.722 5.722 19 C -0.245 4.245 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.931 5.931 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 N -0.491 5.491 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.400 0.600 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.408 0.592 43 H 0.156 0.844 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.385 0.615 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 17.201 15.466 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.043 4.043 3 C -0.200 4.200 4 C -0.171 4.171 5 C -0.067 4.067 6 C -0.242 4.242 7 C 0.322 3.678 8 O -0.391 6.391 9 N -0.370 5.370 10 C 0.073 3.927 11 C 0.047 3.953 12 N -0.259 5.259 13 C 0.166 3.834 14 O -0.285 6.285 15 C -0.242 4.242 16 C 0.055 3.945 17 C 0.069 3.931 18 N -0.367 5.367 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.208 5.208 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.234 0.766 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.267 0.733 43 H 0.174 0.826 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.219 0.781 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.558 18.524 14.983 23.962 hybrid contribution 0.068 -2.017 -0.266 2.036 sum -2.490 16.507 14.717 22.255 Atomic orbital electron populations 1.21943 0.92564 1.00145 1.02347 1.19733 0.96816 0.94239 0.93466 1.22020 1.00667 0.95515 1.01763 1.22117 0.99107 1.00024 0.95885 1.23895 0.92123 0.94162 0.96550 1.22494 1.05160 0.95902 1.00693 1.18424 0.81674 0.81294 0.86369 1.90968 1.47558 1.66752 1.33811 1.45734 1.55646 1.07285 1.28321 1.19840 0.98387 0.81820 0.92696 1.22754 0.85873 0.96887 0.89797 1.67682 1.27947 1.15238 1.15027 1.19371 0.89283 0.87376 0.87348 1.84693 1.29530 1.80512 1.33781 1.22972 0.97424 1.03106 1.00696 1.22198 0.94060 0.89734 0.88518 1.19717 0.91596 0.93079 0.88746 1.42169 1.23191 1.60182 1.11180 1.19198 0.99518 1.22405 0.96450 0.90735 1.24785 0.97494 1.01023 0.97315 1.69670 1.22761 1.49269 1.16119 0.86123 0.80148 0.80170 0.79307 1.21584 1.21659 1.20574 1.68191 1.24415 1.06059 1.22099 0.94945 0.92220 0.91581 0.92775 0.92338 0.92867 0.91793 0.91831 0.95268 0.85814 0.85604 0.76636 0.88279 0.88806 0.73310 0.82624 0.93444 0.93810 0.78095 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 7.56 37.16 0.28 -0.89 16 2 C -0.04 -0.40 0.75 -155.66 -0.12 -0.52 16 3 C -0.14 -1.08 8.02 37.16 0.30 -0.79 16 4 C -0.11 -1.29 7.54 37.16 0.28 -1.01 16 5 C -0.05 -0.39 8.55 -36.13 -0.31 -0.70 16 6 C -0.22 -1.96 9.49 -37.81 -0.36 -2.32 16 7 C 0.53 6.02 5.83 -12.67 -0.07 5.95 16 8 O -0.51 -6.73 8.34 5.26 0.04 -6.68 16 9 N -0.72 -8.06 5.54 -62.68 -0.35 -8.41 16 10 C 0.20 2.58 6.10 -5.19 -0.03 2.55 16 11 C 0.32 4.76 7.01 -157.22 -1.10 3.66 16 12 N -0.53 -7.92 10.36 -10.78 -0.11 -8.03 16 13 C 0.35 4.96 7.83 -16.70 -0.13 4.83 16 14 O -0.48 -5.44 13.58 -18.25 -0.25 -5.69 16 15 C -0.22 -3.21 9.79 -39.16 -0.38 -3.59 16 16 C 0.20 3.43 6.19 -82.31 -0.51 2.92 16 17 C 0.20 3.81 6.61 -5.19 -0.03 3.77 16 18 N -0.72 -17.85 5.59 -61.09 -0.34 -18.19 16 19 C -0.25 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 23 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 N -0.49 -8.44 10.27 -7.05 -0.07 -8.51 16 28 H 0.03 0.29 7.82 -51.93 -0.41 -0.11 16 29 H 0.06 0.67 7.22 -51.93 -0.37 0.30 16 30 H 0.07 0.77 5.44 -51.93 -0.28 0.49 16 31 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 34 H 0.06 0.80 4.82 -51.93 -0.25 0.55 16 35 H 0.06 0.79 6.79 -51.93 -0.35 0.43 16 36 H 0.03 0.30 7.73 -51.93 -0.40 -0.10 16 37 H 0.12 0.73 7.99 -52.49 -0.42 0.31 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.40 4.01 8.45 -40.82 -0.34 3.66 16 40 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.41 2.68 9.06 45.56 0.41 3.09 16 43 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 46 H 0.39 10.27 7.66 -40.82 -0.31 9.96 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -32.63 386.47 -8.07 -40.69 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.08 Total: 12.43 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.44 Total: 6.70 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -0.15 Total: -70.18 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.20 Total: -12.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.63 -8.07 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316715405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.311 kcal (2) G-P(sol) polarization free energy of solvation -32.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds