Wall clock time and date at job start Tue Mar 31 2020 17:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.53000 * 109.47479 * 239.99864 * 2 1 3 5 5 C 1.50700 * 109.47086 * 119.99572 * 2 1 3 6 6 C 1.33000 * 119.99868 * 65.85547 * 5 2 1 7 7 C 1.47093 * 120.00002 * 358.92385 * 6 5 2 8 8 O 1.21619 * 119.99890 * 354.42939 * 7 6 5 9 9 N 1.34775 * 120.00229 * 174.42695 * 7 6 5 10 10 C 1.46500 * 120.00041 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46883 * 179.97438 * 10 9 7 12 12 N 1.31801 * 119.09596 * 90.00205 * 11 10 9 13 13 C 1.32788 * 120.71763 * 179.97438 * 12 11 10 14 14 O 1.35520 * 120.50884 * 179.97438 * 13 12 11 15 15 C 1.39415 * 118.98112 * 0.02562 * 13 12 11 16 16 C 1.38196 * 118.34689 * 359.97438 * 15 13 12 17 17 C 1.50704 * 120.40947 * 180.02562 * 16 15 13 18 18 N 1.46497 * 109.47389 * 95.00126 * 17 16 15 19 19 C 1.36936 * 120.00249 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99619 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00194 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00079 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46887 * 90.00082 * 23 21 19 25 25 H 1.48494 * 109.47103 * 210.00244 * 23 21 19 26 26 H 1.48503 * 109.47102 * 330.00470 * 23 21 19 27 27 N 1.31760 * 119.09805 * 269.73385 * 11 10 9 28 28 H 1.09006 * 109.47189 * 329.72689 * 1 2 3 29 29 H 1.09007 * 109.46748 * 89.72179 * 1 2 3 30 30 H 1.08998 * 109.47036 * 209.72342 * 1 2 3 31 31 H 1.08999 * 109.47638 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47385 * 299.99610 * 3 2 1 33 33 H 1.09002 * 109.47607 * 59.99799 * 3 2 1 34 34 H 1.09005 * 109.46681 * 263.11914 * 4 2 1 35 35 H 1.08999 * 109.46828 * 23.11359 * 4 2 1 36 36 H 1.08996 * 109.46930 * 143.11966 * 4 2 1 37 37 H 1.07998 * 120.00388 * 245.85744 * 5 2 1 38 38 H 1.07997 * 119.99989 * 178.92982 * 6 5 2 39 39 H 0.96998 * 119.99769 * 359.97438 * 9 7 6 40 40 H 1.09002 * 109.47350 * 60.00545 * 10 9 7 41 41 H 1.08994 * 109.47611 * 300.00094 * 10 9 7 42 42 H 0.96704 * 113.99740 * 90.00258 * 14 13 12 43 43 H 1.07997 * 120.83203 * 180.02562 * 15 13 12 44 44 H 1.09005 * 109.46612 * 215.00044 * 17 16 15 45 45 H 1.08994 * 109.46937 * 334.99626 * 17 16 15 46 46 H 0.97006 * 119.99699 * 359.97438 * 18 17 16 47 47 H 0.96995 * 120.00159 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.8098 -2.0125 1.3840 7 6 1.0529 -2.7546 0.3642 8 8 0.5441 -2.1607 -0.5673 9 7 0.9233 -4.0925 0.4618 10 6 0.1699 -4.8316 -0.5542 11 6 0.1762 -6.2999 -0.2151 12 7 -0.7854 -6.7865 0.5438 13 6 -0.8116 -8.0754 0.8621 14 8 -1.8020 -8.5712 1.6431 15 6 0.1960 -8.9105 0.3815 16 6 1.1842 -8.3577 -0.4107 17 6 2.2953 -9.2178 -0.9556 18 7 1.9504 -9.6622 -2.3083 19 6 2.8155 -10.4601 -3.0083 20 1 3.7522 -10.7615 -2.5633 21 6 2.4884 -10.8816 -4.2898 22 7 1.3469 -10.5138 -4.8323 23 14 3.6682 -11.9706 -5.2445 24 1 3.3614 -13.3966 -4.9653 25 1 3.5185 -11.7075 -6.6982 26 1 5.0625 -11.6737 -4.8286 27 7 1.1397 -7.0630 -0.6896 28 1 -0.3634 0.8876 0.5181 29 1 -0.3633 0.0050 -1.0277 30 1 -0.3633 -0.8924 0.5095 31 1 3.1300 1.4426 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 2.2773 -1.7556 -1.0001 35 1 1.2701 -0.7007 -2.0204 36 1 2.9362 -0.2214 -1.6169 37 1 2.5730 -0.1620 1.9877 38 1 2.1847 -2.5251 2.2575 39 1 1.3294 -4.5662 1.2045 40 1 0.6327 -4.6825 -1.5298 41 1 -0.8576 -4.4687 -0.5803 42 1 -2.5730 -8.8831 1.1498 43 1 0.2037 -9.9635 0.6216 44 1 3.2194 -8.6405 -0.9873 45 1 2.4315 -10.0865 -0.3115 46 1 1.1091 -9.3911 -2.7080 47 1 1.1185 -10.8079 -5.7279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316715405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:57 Heat of formation + Delta-G solvation = 6.456266 kcal Electronic energy + Delta-G solvation = -28123.475881 eV Core-core repulsion = 24115.020773 eV Total energy + Delta-G solvation = -4008.455107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.45846 -41.48541 -38.87393 -38.06459 -37.03471 -35.70445 -34.63639 -33.25348 -32.75805 -32.10327 -28.81567 -28.22098 -28.12047 -28.01776 -25.25531 -24.74676 -23.70466 -22.80969 -21.74135 -20.07586 -19.56418 -19.40771 -18.77025 -17.88670 -17.43484 -16.86050 -16.69789 -16.61252 -16.35498 -16.06046 -15.65619 -15.45576 -15.08401 -14.89275 -14.85925 -14.45285 -14.41187 -14.23458 -14.13822 -13.58266 -13.50911 -13.19056 -13.00562 -12.97073 -12.76963 -12.65633 -12.13769 -12.00176 -11.98527 -11.83275 -11.77908 -11.72361 -11.52997 -11.44613 -11.02233 -10.74936 -10.45080 -10.34565 -10.29277 -9.87654 -9.09774 -7.98143 -5.29632 -0.41080 -0.22678 0.48925 1.49018 1.50882 1.59366 2.03871 2.10243 2.35734 2.52487 2.64060 2.79121 3.11843 3.37133 3.70522 3.78036 3.87468 3.88947 4.08419 4.09053 4.14759 4.24206 4.25097 4.46877 4.49554 4.58626 4.63082 4.78497 4.82104 4.87190 4.88322 4.97084 4.98801 5.10442 5.22425 5.24774 5.28377 5.33569 5.42165 5.47907 5.54749 5.55987 5.74284 5.81030 6.20725 6.44473 6.52972 6.88474 7.26444 7.28269 7.95120 8.20359 9.25315 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002454 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.018375 B =11406.535508 C =13101.200493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.047 4.047 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.041 4.041 6 C -0.229 4.229 7 C 0.525 3.475 8 O -0.537 6.537 9 N -0.713 5.713 10 C 0.206 3.794 11 C 0.318 3.682 12 N -0.537 5.537 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.212 4.212 16 C 0.183 3.817 17 C 0.198 3.802 18 N -0.735 5.735 19 C -0.245 4.245 20 H 0.086 0.914 21 C -0.074 4.074 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.267 1.267 27 N -0.517 5.517 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.407 0.593 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.430 0.570 43 H 0.175 0.825 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.372 0.628 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.901 17.570 17.754 25.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.167 4.167 5 C -0.060 4.060 6 C -0.249 4.249 7 C 0.317 3.683 8 O -0.417 6.417 9 N -0.366 5.366 10 C 0.080 3.920 11 C 0.049 3.951 12 N -0.263 5.263 13 C 0.176 3.824 14 O -0.285 6.285 15 C -0.236 4.236 16 C 0.039 3.961 17 C 0.072 3.928 18 N -0.378 5.378 19 C -0.376 4.376 20 H 0.104 0.896 21 C -0.266 4.266 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.192 1.192 27 N -0.233 5.233 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.242 0.758 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.294 0.706 43 H 0.192 0.808 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.203 0.797 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.793 18.882 17.326 25.690 hybrid contribution -0.242 -2.086 -0.890 2.280 sum -2.035 16.796 16.437 23.589 Atomic orbital electron populations 1.21855 0.93485 1.00017 1.01102 1.19757 0.96122 0.95545 0.93289 1.21982 1.01206 0.94005 1.02341 1.22043 0.98709 0.99447 0.96500 1.24145 0.91473 0.94008 0.96365 1.22623 1.05315 0.96156 1.00827 1.18980 0.81494 0.81160 0.86673 1.90970 1.48625 1.67116 1.34948 1.45686 1.55520 1.07359 1.28061 1.19666 0.98563 0.81187 0.92604 1.22921 0.85433 0.97230 0.89488 1.67772 1.27654 1.15788 1.15099 1.19438 0.89575 0.86985 0.86434 1.84659 1.29934 1.80287 1.33605 1.23073 0.96610 1.04023 0.99927 1.21904 0.94513 0.89761 0.89930 1.19768 0.92336 0.94077 0.86644 1.42329 1.22353 1.60080 1.13087 1.19650 0.99850 1.21493 0.96613 0.89635 1.25632 0.99222 1.03142 0.98635 1.69833 1.24816 1.51253 1.16202 0.85075 0.78683 0.78416 0.77162 1.21006 1.22558 1.19166 1.68119 1.25688 1.06503 1.23037 0.93501 0.94088 0.93076 0.91865 0.92809 0.91298 0.93401 0.93923 0.94614 0.82495 0.83003 0.75818 0.89822 0.88671 0.70633 0.80783 0.93913 0.91602 0.79690 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 7.56 71.98 0.54 -1.66 16 2 C -0.05 -0.84 0.75 -52.93 -0.04 -0.88 16 3 C -0.14 -1.82 8.02 71.98 0.58 -1.24 16 4 C -0.11 -2.52 7.54 71.98 0.54 -1.97 16 5 C -0.04 -0.58 8.55 24.52 0.21 -0.37 16 6 C -0.23 -3.65 9.49 23.43 0.22 -3.43 16 7 C 0.53 11.85 5.83 86.57 0.50 12.36 16 8 O -0.54 -14.60 8.34 -4.09 -0.03 -14.64 16 9 N -0.71 -16.01 5.54 -470.46 -2.61 -18.62 16 10 C 0.21 5.50 6.10 85.63 0.52 6.03 16 11 C 0.32 9.57 7.01 138.76 0.97 10.55 16 12 N -0.54 -15.40 10.36 -300.70 -3.12 -18.52 16 13 C 0.36 9.57 7.83 84.83 0.66 10.23 16 14 O -0.47 -9.54 13.58 -88.23 -1.20 -10.74 16 15 C -0.21 -5.94 9.79 22.54 0.22 -5.72 16 16 C 0.18 6.21 6.19 42.45 0.26 6.47 16 17 C 0.20 7.60 6.61 85.63 0.57 8.17 16 18 N -0.74 -36.56 5.59 -347.18 -1.94 -38.50 16 19 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 20 H 0.09 4.34 7.83 -2.91 -0.02 4.31 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 22 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 23 Si 0.98 45.22 29.55 68.60 2.03 47.24 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 N -0.52 -17.87 10.27 -176.22 -1.81 -19.68 16 28 H 0.05 0.80 7.82 -2.38 -0.02 0.78 16 29 H 0.04 0.97 7.22 -2.38 -0.02 0.95 16 30 H 0.05 1.19 5.44 -2.39 -0.01 1.18 16 31 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.71 8.11 -2.39 -0.02 0.69 16 34 H 0.05 1.23 4.82 -2.38 -0.01 1.22 16 35 H 0.04 1.12 6.79 -2.39 -0.02 1.11 16 36 H 0.04 0.73 7.73 -2.39 -0.02 0.72 16 37 H 0.16 1.21 7.99 -2.91 -0.02 1.19 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.41 7.90 8.45 -92.71 -0.78 7.12 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.43 4.44 9.06 -74.05 -0.67 3.77 16 43 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.07 2.25 8.06 -2.39 -0.02 2.24 16 46 H 0.37 20.24 7.66 -92.70 -0.71 19.53 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -71.08 386.47 -2.46 -73.54 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -1.14 Total: 36.30 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 7.08 Total: 22.41 kcal Atomic # 7 Polarization: -144.93 SS G_CDS: -9.19 Total: -154.12 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -1.23 Total: -25.38 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.08 -2.46 -73.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316715405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.998 kcal (2) G-P(sol) polarization free energy of solvation -71.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds