Wall clock time and date at job start Tue Mar 31 2020 17:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 C 1.52998 * 109.47595 * 120.00332 * 2 1 3 5 5 C 1.53005 * 109.46941 * 66.12858 * 4 2 1 6 6 H 1.09000 * 109.47242 * 304.07399 * 5 4 2 7 7 C 1.52995 * 109.47417 * 64.07856 * 5 4 2 8 8 N 1.46496 * 109.47463 * 174.99886 * 7 5 4 9 9 C 1.36942 * 119.99848 * 179.97438 * 8 7 5 10 10 H 1.07991 * 120.00098 * 0.02562 * 9 8 7 11 11 C 1.38810 * 119.99673 * 179.97438 * 9 8 7 12 12 N 1.31620 * 120.00138 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99929 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47110 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46947 * 120.00674 * 13 11 9 16 16 H 1.48501 * 109.47625 * 240.00451 * 13 11 9 17 17 N 1.46501 * 109.46762 * 184.07987 * 5 4 2 18 18 C 1.34772 * 120.00516 * 88.10949 * 17 5 4 19 19 O 1.21505 * 119.99665 * 354.78105 * 18 17 5 20 20 C 1.48226 * 120.00134 * 174.78896 * 18 17 5 21 21 C 1.39626 * 119.65413 * 180.26812 * 20 18 17 22 22 C 1.38546 * 119.24777 * 180.22837 * 21 20 18 23 23 C 1.38585 * 118.54862 * 359.50673 * 22 21 20 24 24 C 1.39584 * 119.25107 * 0.25039 * 23 22 21 25 25 C 1.48223 * 119.65730 * 179.97438 * 24 23 22 26 26 N 1.34770 * 120.00426 * 179.97438 * 25 24 23 27 27 O 1.21508 * 119.99568 * 0.02562 * 25 24 23 28 28 N 1.32345 * 119.65431 * 359.97438 * 20 18 17 29 29 H 1.09001 * 109.47626 * 63.69037 * 1 2 3 30 30 H 1.09007 * 109.47348 * 183.68965 * 1 2 3 31 31 H 1.09000 * 109.46780 * 303.68531 * 1 2 3 32 32 H 1.09005 * 109.46837 * 239.99939 * 2 1 3 33 33 H 1.08993 * 109.47143 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46864 * 300.00503 * 3 2 1 35 35 H 1.08999 * 109.46812 * 59.99985 * 3 2 1 36 36 H 1.08997 * 109.46912 * 306.13497 * 4 2 1 37 37 H 1.08991 * 109.47535 * 186.12931 * 4 2 1 38 38 H 1.09006 * 109.47045 * 295.00246 * 7 5 4 39 39 H 1.08995 * 109.47068 * 54.99283 * 7 5 4 40 40 H 0.97000 * 119.99958 * 359.97438 * 8 7 5 41 41 H 0.97004 * 120.00080 * 179.97438 * 12 11 9 42 42 H 0.97005 * 119.99852 * 268.10219 * 17 5 4 43 43 H 1.08002 * 120.37785 * 0.02562 * 21 20 18 44 44 H 1.08003 * 120.72535 * 179.78114 * 22 21 20 45 45 H 1.08003 * 120.36954 * 180.22890 * 23 22 21 46 46 H 0.97006 * 119.99643 * 0.02562 * 26 25 24 47 47 H 0.97003 * 120.00524 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6598 -2.2014 1.1744 6 1 0.5814 -2.2934 1.0452 7 6 2.3730 -2.8521 -0.0125 8 7 2.1043 -4.2922 -0.0141 9 6 2.6417 -5.0878 -0.9905 10 1 3.2638 -4.6538 -1.7591 11 6 2.3874 -6.4524 -0.9918 12 7 1.6296 -6.9815 -0.0547 13 14 3.1198 -7.5377 -2.3241 14 1 3.9274 -6.7058 -3.2519 15 1 3.9883 -8.5686 -1.7009 16 1 2.0265 -8.2018 -3.0783 17 7 2.0620 -2.8720 2.4133 18 6 1.2211 -2.9038 3.4661 19 8 0.1697 -2.2964 3.4223 20 6 1.5791 -3.6795 4.6774 21 6 0.7001 -3.7120 5.7617 22 6 1.0453 -4.4358 6.8915 23 6 2.2538 -5.1139 6.9000 24 6 3.0834 -5.0433 5.7796 25 6 4.3783 -5.7646 5.7792 26 7 5.1844 -5.7017 4.7010 27 8 4.7125 -6.4135 6.7506 28 7 2.7259 -4.3388 4.7175 29 1 -0.3634 0.4555 -0.9212 30 1 -0.3634 -1.0256 0.0661 31 1 -0.3633 0.5700 0.8551 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.5899 -0.2748 2.1357 37 1 3.1245 -0.6272 1.3057 38 1 2.0077 -2.4132 -0.9410 39 1 3.4465 -2.6828 0.0715 40 1 1.5458 -4.6821 0.6765 41 1 1.4516 -7.9351 -0.0558 42 1 2.9335 -3.2934 2.4758 43 1 -0.2369 -3.1762 5.7215 44 1 0.3849 -4.4743 7.7452 45 1 2.5505 -5.6902 7.7639 46 1 4.9174 -5.1840 3.9254 47 1 6.0320 -6.1735 4.7009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319644006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:23 Heat of formation + Delta-G solvation = -42.281064 kcal Electronic energy + Delta-G solvation = -29129.737930 eV Core-core repulsion = 25119.169414 eV Total energy + Delta-G solvation = -4010.568516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92864 -39.59123 -38.59132 -37.17736 -34.87782 -33.99874 -33.59431 -32.61611 -31.70078 -30.94358 -29.05455 -27.04238 -25.59495 -25.07315 -24.79628 -22.79448 -21.83863 -21.00199 -20.34576 -19.44885 -18.46567 -17.65428 -17.16086 -16.89592 -16.17409 -15.98697 -15.49762 -15.32305 -15.19122 -14.66506 -14.55490 -14.43647 -14.01192 -13.76148 -13.61723 -13.42857 -13.21744 -13.14420 -12.79857 -12.37886 -12.22185 -12.17761 -11.93822 -11.68746 -11.13939 -10.92023 -10.86371 -10.79767 -10.78320 -10.47147 -10.25827 -10.21532 -10.05671 -9.99491 -9.77452 -9.74553 -9.63082 -9.38701 -8.93848 -8.68987 -6.97531 -5.80053 -3.09813 0.35480 0.76126 2.40965 3.04863 3.17506 3.32538 3.40009 3.45915 3.48211 3.84916 3.93717 4.54238 4.63240 4.67859 4.77048 4.78810 4.98763 5.01638 5.08954 5.28781 5.30766 5.39660 5.52343 5.53922 5.70465 5.72703 5.74927 5.82189 5.84781 5.90741 5.99646 6.09556 6.15837 6.19135 6.25311 6.33058 6.41222 6.48877 6.57030 6.67007 6.68242 6.87900 7.15719 7.43027 7.66322 7.82426 8.13548 8.36669 8.38412 9.49412 10.05431 10.40576 11.41980 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.006596 B = 0.004820 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4244.273868 B = 5807.373573 C = 8839.893373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.133 3.867 6 H 0.093 0.907 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.241 4.241 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.688 5.688 18 C 0.572 3.428 19 O -0.537 6.537 20 C 0.088 3.912 21 C -0.090 4.090 22 C -0.088 4.088 23 C -0.094 4.094 24 C 0.075 3.925 25 C 0.582 3.418 26 N -0.829 5.829 27 O -0.543 6.543 28 N -0.425 5.425 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.024 0.976 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.412 0.588 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.416 0.584 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 11.751 10.983 16.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.029 3.971 6 H 0.111 0.889 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.577 5.577 13 Si 0.736 3.264 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.337 5.337 18 C 0.356 3.644 19 O -0.414 6.414 20 C -0.053 4.053 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.066 4.066 25 C 0.365 3.635 26 N -0.391 5.391 27 O -0.420 6.420 28 N -0.139 5.139 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.248 0.752 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.170 0.830 46 H 0.247 0.753 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.713 11.788 10.715 16.022 hybrid contribution 0.236 -1.146 -0.224 1.191 sum 1.948 10.642 10.492 15.070 Atomic orbital electron populations 1.21879 0.95164 1.02401 1.01093 1.21138 0.96117 0.95792 0.98548 1.21823 1.00729 0.96234 1.01368 1.21965 1.00929 0.94617 0.98328 1.21453 1.01342 0.90947 0.83365 0.88907 1.21023 0.96653 0.86603 0.94101 1.42346 1.60876 1.00893 1.33378 1.19231 1.24312 0.89182 1.04477 0.91127 1.24732 1.00451 0.96852 0.98676 1.69680 1.41796 1.11503 1.34736 0.86155 0.78278 0.80731 0.81216 1.20565 1.21930 1.21909 1.45793 1.19857 1.55506 1.12531 1.17745 0.83971 0.80294 0.82395 1.90765 1.24350 1.44755 1.81544 1.21248 0.91138 0.97475 0.95457 1.22361 1.00275 0.96439 0.92051 1.21648 0.96125 0.95132 0.98475 1.22300 0.93408 0.96887 0.98872 1.21046 0.96149 0.98330 0.91112 1.17779 0.83001 0.79777 0.82949 1.43644 1.22902 1.53854 1.18733 1.90815 1.74337 1.42342 1.34462 1.67382 1.16669 1.04444 1.25438 0.93112 0.91990 0.92930 0.90336 0.92874 0.92901 0.93021 0.91619 0.91808 0.94533 0.95849 0.78055 0.93594 0.75194 0.82807 0.83244 0.82992 0.75337 0.76294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.05 37.16 0.34 -1.50 16 2 C -0.10 -1.17 2.78 -90.62 -0.25 -1.42 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 4 C -0.12 -1.57 4.47 -26.73 -0.12 -1.68 16 5 C 0.13 2.13 2.08 -67.93 -0.14 1.99 16 6 H 0.09 1.68 5.77 -51.93 -0.30 1.38 16 7 C 0.14 2.67 5.45 -4.05 -0.02 2.65 16 8 N -0.73 -17.43 5.43 -59.92 -0.33 -17.75 16 9 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 13 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 17 N -0.69 -10.89 4.47 -54.63 -0.24 -11.13 16 18 C 0.57 9.32 7.80 -12.16 -0.09 9.23 16 19 O -0.54 -9.71 15.99 5.36 0.09 -9.63 16 20 C 0.09 1.27 6.75 -83.02 -0.56 0.71 16 21 C -0.09 -1.07 9.63 -38.95 -0.38 -1.45 16 22 C -0.09 -0.85 10.16 -39.34 -0.40 -1.25 16 23 C -0.09 -1.05 9.63 -38.95 -0.38 -1.42 16 24 C 0.07 1.00 6.75 -83.03 -0.56 0.44 16 25 C 0.58 8.07 8.09 -12.16 -0.10 7.97 16 26 N -0.83 -9.52 8.86 30.62 0.27 -9.25 16 27 O -0.54 -8.73 17.16 5.36 0.09 -8.64 16 28 N -0.42 -6.01 8.72 -6.38 -0.06 -6.06 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.87 6.36 -51.93 -0.33 0.54 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.68 6.66 -51.93 -0.35 0.34 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.39 9.97 7.33 -40.82 -0.30 9.67 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.41 6.38 7.97 -40.82 -0.33 6.05 16 43 H 0.15 1.65 7.64 -52.49 -0.40 1.25 16 44 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 45 H 0.15 1.48 7.64 -52.48 -0.40 1.08 16 46 H 0.42 4.67 8.16 -40.82 -0.33 4.34 16 47 H 0.41 3.89 8.93 -40.82 -0.36 3.52 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -32.83 394.05 -7.89 -40.72 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -6.78 Total: 19.52 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -2.57 Total: 6.17 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: 0.37 Total: -70.98 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.83 -7.89 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319644006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.560 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds