Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47203 * 2 1 4 4 C 1.53002 * 109.46910 * 120.00353 * 2 1 3 5 5 H 1.08997 * 109.47173 * 299.99894 * 4 2 1 6 6 C 1.52999 * 109.46910 * 179.97438 * 4 2 1 7 7 N 1.46507 * 109.47357 * 184.99707 * 6 4 2 8 8 C 1.34773 * 120.00399 * 180.02562 * 7 6 4 9 9 O 1.21549 * 119.99849 * 0.02562 * 8 7 6 10 10 C 1.47861 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.39605 * 120.11149 * 359.72684 * 10 8 7 12 12 C 1.37979 * 119.99566 * 179.74199 * 11 10 8 13 13 C 1.38264 * 120.21895 * 0.50870 * 12 11 10 14 14 C 1.38947 * 120.22287 * 359.76900 * 13 12 11 15 15 N 1.39978 * 119.99625 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99467 * 213.30763 * 15 14 13 17 17 N 1.34783 * 119.99675 * 185.31666 * 16 15 14 18 18 O 1.21584 * 120.00702 * 5.31541 * 16 15 14 19 19 C 1.38628 * 120.00069 * 359.97438 * 14 13 12 20 20 N 1.46499 * 109.47245 * 60.00081 * 4 2 1 21 21 C 1.36933 * 119.99661 * 274.99734 * 20 4 2 22 22 H 1.07994 * 120.00228 * 0.02562 * 21 20 4 23 23 C 1.38815 * 119.99644 * 179.72681 * 21 20 4 24 24 N 1.31619 * 120.00271 * 0.27536 * 23 21 20 25 25 Si 1.86805 * 119.99865 * 180.27809 * 23 21 20 26 26 H 1.48501 * 109.46908 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.46920 * 119.99952 * 25 23 21 28 28 H 1.48500 * 109.47114 * 239.99819 * 25 23 21 29 29 H 1.08997 * 109.47116 * 299.99718 * 1 2 3 30 30 H 1.09006 * 109.46711 * 59.99946 * 1 2 3 31 31 H 1.09001 * 109.46805 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47275 * 240.00089 * 2 1 3 33 33 H 1.09001 * 109.47411 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47667 * 300.00197 * 3 2 1 35 35 H 1.09006 * 109.46932 * 59.99879 * 3 2 1 36 36 H 1.08996 * 109.47357 * 304.99794 * 6 4 2 37 37 H 1.09001 * 109.47291 * 64.99966 * 6 4 2 38 38 H 0.97000 * 119.99083 * 0.02562 * 7 6 4 39 39 H 1.07994 * 120.00730 * 359.97438 * 11 10 8 40 40 H 1.07997 * 119.89525 * 180.25654 * 12 11 10 41 41 H 1.08001 * 119.88501 * 179.74067 * 13 12 11 42 42 H 0.97001 * 120.00511 * 33.30404 * 15 14 13 43 43 H 0.96999 * 119.99989 * 0.02562 * 17 16 15 44 44 H 0.96996 * 119.99625 * 179.97438 * 17 16 15 45 45 H 1.07999 * 120.11014 * 180.02562 * 19 14 13 46 46 H 0.96997 * 119.99930 * 95.00172 * 20 4 2 47 47 H 0.96991 * 120.00285 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2076 2.1392 6 6 3.5699 -0.7219 1.2489 7 7 4.0583 -1.5142 2.3804 8 6 5.3833 -1.6555 2.5822 9 8 6.1732 -1.1252 1.8257 10 6 5.8761 -2.4556 3.7238 11 6 4.9708 -3.0609 4.5974 12 6 5.4332 -3.8114 5.6589 13 6 6.7921 -3.9582 5.8677 14 6 7.7012 -3.3550 5.0072 15 7 9.0758 -3.5063 5.2234 16 6 9.9213 -2.5043 4.9109 17 7 11.2523 -2.6878 5.0178 18 8 9.4835 -1.4350 4.5325 19 6 7.2467 -2.6033 3.9347 20 7 1.5516 -2.1026 1.2491 21 6 0.3101 -2.3898 1.7503 22 1 -0.3092 -1.5981 2.1453 23 6 -0.1549 -3.6977 1.7451 24 7 0.5997 -4.6625 1.2633 25 14 -1.8517 -4.0885 2.4216 26 1 -2.4937 -2.8379 2.9004 27 1 -2.6838 -4.6944 1.3513 28 1 -1.7261 -5.0438 3.5516 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.9329 -1.1564 0.3175 37 1 3.9337 0.3017 1.3383 38 1 3.4278 -1.9370 2.9842 39 1 3.9087 -2.9449 4.4403 40 1 4.7315 -4.2824 6.3312 41 1 7.1481 -4.5434 6.7027 42 1 9.4199 -4.3322 5.5981 43 1 11.6017 -3.5410 5.3192 44 1 11.8608 -1.9668 4.7925 45 1 7.9517 -2.1340 3.2646 46 1 2.1078 -2.8136 0.8941 47 1 0.2746 -5.5764 1.2593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319957737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = -61.341531 kcal Electronic energy + Delta-G solvation = -28649.194790 eV Core-core repulsion = 24637.799750 eV Total energy + Delta-G solvation = -4011.395040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.77951 -40.89532 -39.32997 -38.61173 -35.90901 -35.33792 -34.90874 -34.61431 -32.39021 -32.00282 -30.52072 -29.35087 -27.47448 -25.94442 -24.74600 -24.25052 -23.14281 -22.09969 -21.51092 -20.77673 -19.66939 -19.34196 -18.94451 -18.00645 -17.37648 -17.00329 -16.86235 -16.48303 -16.39493 -16.17046 -15.68312 -15.61897 -15.24534 -15.20171 -14.93313 -14.83203 -14.56300 -14.30064 -13.90498 -13.61344 -13.42718 -12.90788 -12.86610 -12.83047 -12.70775 -12.64909 -12.44378 -12.26019 -11.94923 -11.75808 -11.65665 -11.45256 -11.34592 -11.27730 -11.05487 -10.79419 -10.74993 -10.17450 -9.86733 -9.17067 -8.94153 -7.84209 -5.11975 -0.17011 0.32039 1.51374 1.54200 1.61659 1.67742 1.80277 2.09236 2.21259 2.62137 2.89868 3.46771 3.49350 3.71588 3.86266 3.91112 3.95128 4.14280 4.21163 4.29244 4.31463 4.43404 4.44575 4.49687 4.64466 4.75596 4.89733 4.92984 4.98026 5.06612 5.15049 5.17203 5.26643 5.29413 5.31073 5.38333 5.42653 5.51588 5.62913 5.66333 5.78118 5.81845 5.91325 5.96315 6.35127 6.54774 6.94978 7.17458 7.43189 7.51774 8.12970 8.39636 9.38719 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002948 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.649100 B = 9496.798270 C =11264.541809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.120 3.880 7 N -0.702 5.702 8 C 0.548 3.452 9 O -0.587 6.587 10 C -0.134 4.134 11 C -0.103 4.103 12 C -0.099 4.099 13 C -0.103 4.103 14 C 0.148 3.852 15 N -0.668 5.668 16 C 0.694 3.306 17 N -0.836 5.836 18 O -0.627 6.627 19 C -0.087 4.087 20 N -0.727 5.727 21 C -0.213 4.213 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.958 3.042 26 H -0.267 1.267 27 H -0.304 1.304 28 H -0.296 1.296 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.131 0.869 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.430 0.570 43 H 0.419 0.581 44 H 0.424 0.576 45 H 0.114 0.886 46 H 0.372 0.628 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.926 0.916 12.260 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.077 0.923 6 C -0.004 4.004 7 N -0.353 5.353 8 C 0.337 3.663 9 O -0.469 6.469 10 C -0.138 4.138 11 C -0.123 4.123 12 C -0.117 4.117 13 C -0.124 4.124 14 C 0.052 3.948 15 N -0.319 5.319 16 C 0.392 3.608 17 N -0.406 5.406 18 O -0.507 6.507 19 C -0.109 4.109 20 N -0.367 5.367 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.789 3.211 26 H -0.192 1.192 27 H -0.232 1.232 28 H -0.223 1.223 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.249 0.751 39 H 0.149 0.851 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.270 0.730 43 H 0.250 0.750 44 H 0.258 0.742 45 H 0.132 0.868 46 H 0.204 0.796 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.865 2.145 11.517 20.535 hybrid contribution -0.482 -1.250 -0.017 1.340 sum 16.383 0.895 11.500 20.036 Atomic orbital electron populations 1.21724 0.95153 1.01853 1.00345 1.21623 0.96582 0.96196 0.98381 1.21858 1.00774 0.95057 1.02239 1.20673 0.89604 0.86315 0.96939 0.92326 1.21684 0.94957 0.95439 0.88321 1.45870 1.06284 1.52407 1.30707 1.18703 0.82459 0.80235 0.84921 1.90701 1.56453 1.50817 1.48977 1.19738 0.94387 1.02390 0.97265 1.21531 0.99452 0.96502 0.94794 1.21307 0.95936 0.97393 0.97079 1.21441 0.92049 1.00635 0.98263 1.17408 0.83402 0.99754 0.94219 1.42275 1.03649 1.18815 1.67132 1.16290 0.82994 0.83292 0.78197 1.42717 1.03488 1.21015 1.73378 1.91049 1.77536 1.27631 1.54505 1.21074 0.94296 0.98700 0.96826 1.42582 1.17374 1.03205 1.73524 1.19499 0.93030 0.92173 1.29814 0.90231 1.25351 1.01191 0.96179 1.03539 1.69818 1.38202 0.99778 1.53961 0.85287 0.81000 0.77801 0.76977 1.19159 1.23218 1.22343 0.93362 0.93018 0.93063 0.93182 0.92635 0.91961 0.92152 0.93288 0.90245 0.75057 0.85089 0.81573 0.80724 0.72993 0.74953 0.74238 0.86817 0.79608 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.26 71.98 0.59 -4.06 16 2 C -0.11 -3.60 2.69 -10.79 -0.03 -3.63 16 3 C -0.14 -3.83 8.84 71.98 0.64 -3.19 16 4 C 0.17 6.46 2.18 44.99 0.10 6.55 16 5 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 6 C 0.12 4.39 4.73 86.38 0.41 4.80 16 7 N -0.70 -26.00 5.34 -465.95 -2.49 -28.49 16 8 C 0.55 21.89 7.77 86.79 0.67 22.57 16 9 O -0.59 -27.39 16.34 -3.87 -0.06 -27.45 16 10 C -0.13 -4.59 5.87 -20.11 -0.12 -4.71 16 11 C -0.10 -2.87 9.54 22.54 0.21 -2.65 16 12 C -0.10 -1.98 10.02 22.21 0.22 -1.76 16 13 C -0.10 -1.77 9.95 22.45 0.22 -1.55 16 14 C 0.15 3.45 6.28 38.10 0.24 3.69 16 15 N -0.67 -10.86 5.35 -317.27 -1.70 -12.55 16 16 C 0.69 14.66 8.57 179.05 1.53 16.20 16 17 N -0.84 -8.02 8.88 -184.74 -1.64 -9.66 16 18 O -0.63 -21.32 14.86 -3.98 -0.06 -21.38 16 19 C -0.09 -2.90 8.20 22.66 0.19 -2.72 16 20 N -0.73 -33.32 4.44 -322.95 -1.43 -34.76 16 21 C -0.21 -10.64 7.57 84.03 0.64 -10.01 16 22 H 0.08 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 24 N -0.97 -56.13 13.06 21.65 0.28 -55.85 16 25 Si 0.96 43.93 29.55 68.60 2.03 45.95 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 28 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.05 2.16 6.01 -2.39 -0.01 2.14 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.05 1.47 6.54 -2.39 -0.02 1.45 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.71 6.71 -2.39 -0.02 2.70 16 38 H 0.41 14.84 6.17 -92.71 -0.57 14.27 16 39 H 0.13 3.64 6.40 -2.91 -0.02 3.63 16 40 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.43 2.67 8.83 -92.71 -0.82 1.85 16 43 H 0.42 0.47 8.85 -92.71 -0.82 -0.35 16 44 H 0.42 3.61 8.93 -92.71 -0.83 2.78 16 45 H 0.11 4.55 6.00 -2.91 -0.02 4.53 16 46 H 0.37 19.12 7.80 -92.71 -0.72 18.40 16 47 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.41 386.11 -1.78 -81.19 By element: Atomic # 1 Polarization: 49.47 SS G_CDS: -2.70 Total: 46.77 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 5.99 Total: 16.23 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -6.98 Total: -141.31 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.12 Total: -48.83 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -79.41 -1.78 -81.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319957737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.848 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds