Wall clock time and date at job start Tue Mar 31 2020 19:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46556 * 2 1 4 4 H 1.08994 * 109.47790 * 306.13894 * 3 2 1 5 5 C 1.50704 * 109.46779 * 186.13684 * 3 2 1 6 6 H 1.07994 * 120.00007 * 246.10059 * 5 3 2 7 7 C 1.37877 * 119.99618 * 66.10069 * 5 3 2 8 8 N 1.31512 * 120.00130 * 202.19724 * 7 5 3 9 9 Si 1.86803 * 120.00294 * 22.20221 * 7 5 3 10 10 H 1.48493 * 109.47037 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46719 * 300.00169 * 9 7 5 12 12 H 1.48503 * 109.47067 * 59.99607 * 9 7 5 13 13 N 1.46506 * 109.47130 * 66.14301 * 3 2 1 14 14 C 1.34768 * 119.99846 * 275.00110 * 13 3 2 15 15 O 1.21372 * 120.00111 * 359.97438 * 14 13 3 16 16 C 1.49313 * 120.00140 * 180.02562 * 14 13 3 17 17 O 1.21395 * 119.99491 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00118 * 179.97438 * 16 14 13 19 19 C 1.39199 * 119.99747 * 184.21729 * 18 16 14 20 20 C 1.36211 * 126.27165 * 312.94111 * 19 18 16 21 21 C 1.50704 * 126.07161 * 359.96715 * 20 19 18 22 22 C 1.39698 * 107.85665 * 179.97438 * 20 19 18 23 23 N 1.30846 * 108.46028 * 0.02562 * 22 20 19 24 24 N 1.35846 * 126.27065 * 132.63808 * 19 18 16 25 25 C 1.46503 * 126.09985 * 0.02562 * 24 19 18 26 26 C 1.53007 * 109.46931 * 95.12110 * 25 24 19 27 27 C 1.52998 * 117.49542 * 243.15139 * 26 25 24 28 28 C 1.53000 * 117.49573 * 174.48880 * 26 25 24 29 29 H 1.08989 * 109.47385 * 299.99451 * 1 2 3 30 30 H 1.09004 * 109.47102 * 60.00008 * 1 2 3 31 31 H 1.09008 * 109.46827 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46994 * 240.00270 * 2 1 3 33 33 H 1.08991 * 109.46955 * 120.00205 * 2 1 3 34 34 H 0.97002 * 119.99709 * 354.96681 * 8 7 5 35 35 H 0.97002 * 119.99670 * 94.98893 * 13 3 2 36 36 H 0.96994 * 119.99913 * 4.21877 * 18 16 14 37 37 H 1.08998 * 109.47326 * 97.86514 * 21 20 19 38 38 H 1.09006 * 109.46635 * 217.86469 * 21 20 19 39 39 H 1.08999 * 109.47061 * 337.86161 * 21 20 19 40 40 H 1.08001 * 125.76690 * 180.02562 * 22 20 19 41 41 H 1.08995 * 109.47148 * 215.11993 * 25 24 19 42 42 H 1.08991 * 109.47343 * 335.12107 * 25 24 19 43 43 H 1.09001 * 115.54750 * 28.82105 * 26 25 24 44 44 H 1.08991 * 117.50129 * 0.02562 * 27 26 25 45 45 H 1.09002 * 117.49479 * 145.02508 * 27 26 25 46 46 H 1.08992 * 117.50089 * 214.97587 * 28 26 25 47 47 H 1.08997 * 117.49848 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5897 1.9872 -0.8298 5 6 3.5393 1.4453 -0.1519 6 1 4.1633 1.7945 0.6573 7 6 4.1142 1.0020 -1.3241 8 7 5.3628 0.5892 -1.3290 9 14 3.1196 0.9879 -2.9053 10 1 3.9604 0.4699 -4.0142 11 1 1.9318 0.1131 -2.7350 12 1 2.6757 2.3689 -3.2232 13 7 1.6759 2.0892 1.2633 14 6 0.4610 2.6550 1.4050 15 8 -0.3314 2.6294 0.4860 16 6 0.0902 3.3146 2.6922 17 8 0.8830 3.3406 3.6112 18 7 -1.1246 3.8809 2.8338 19 6 -1.4386 4.5717 4.0008 20 6 -1.2179 4.1436 5.2749 21 6 -0.5890 2.8336 5.6744 22 6 -1.6782 5.1344 6.1455 23 7 -2.1582 6.1215 5.4332 24 7 -2.0162 5.7989 4.0775 25 6 -2.4217 6.6345 2.9445 26 6 -3.9042 6.4032 2.6451 27 6 -4.2653 5.8071 1.2831 28 6 -4.5541 7.2819 1.5744 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.9017 0.6646 -0.5260 35 1 2.3093 2.1098 1.9976 36 1 -1.7799 3.8071 2.1226 37 1 0.4671 2.9896 5.8940 38 1 -1.0909 2.4450 6.5605 39 1 -0.6885 2.1188 4.8575 40 1 -1.6436 5.0927 7.2242 41 1 -2.2601 7.6839 3.1907 42 1 -1.8288 6.3714 2.0685 43 1 -4.5168 6.1145 3.4993 44 1 -3.4467 5.5793 0.6005 45 1 -5.1157 5.1266 1.2411 46 1 -5.5943 7.5710 1.7238 47 1 -3.9256 8.0250 1.0836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324357321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:39 Heat of formation + Delta-G solvation = 14.574453 kcal Electronic energy + Delta-G solvation = -29404.520722 eV Core-core repulsion = 25396.417646 eV Total energy + Delta-G solvation = -4008.103076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.80786 -41.56749 -39.81759 -38.53639 -37.36073 -36.15958 -34.50104 -34.26799 -33.17434 -31.83690 -29.43808 -28.97676 -26.68693 -26.01392 -24.25323 -23.38083 -22.75380 -22.61459 -21.53260 -21.39810 -20.76906 -20.34891 -19.26850 -18.58542 -17.83071 -17.39168 -16.93804 -16.52222 -16.46748 -15.83209 -15.66007 -15.47785 -15.16969 -14.93333 -14.69127 -14.51488 -14.46992 -14.27430 -14.04956 -13.68101 -13.62823 -13.54345 -13.11696 -12.82767 -12.66247 -12.64532 -12.49010 -12.43119 -12.27277 -12.06532 -11.77636 -11.53254 -11.46798 -11.43172 -11.23093 -11.07348 -10.79345 -10.41146 -10.11653 -10.04141 -9.23623 -8.84140 -6.45587 0.05346 0.59255 0.94536 1.48120 1.52678 1.58016 1.71269 1.72761 2.07880 2.42826 2.56130 2.77013 2.97499 3.34929 3.41478 3.64018 3.89764 3.93633 4.07003 4.18598 4.22344 4.30131 4.38830 4.43632 4.45698 4.49829 4.66851 4.71997 4.75276 4.79272 4.91619 4.95579 5.09083 5.11183 5.13940 5.14443 5.19010 5.22454 5.23662 5.38219 5.51455 5.60167 5.64159 5.74959 5.81153 5.98440 6.39055 6.48858 6.60483 6.64128 6.94168 7.30114 8.55946 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014353 B = 0.003173 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.330375 B = 8823.128899 C = 9909.909605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.254 3.746 4 H 0.039 0.961 5 C -0.627 4.627 6 H 0.036 0.964 7 C 0.000 4.000 8 N -0.920 5.920 9 Si 1.070 2.930 10 H -0.284 1.284 11 H -0.243 1.243 12 H -0.268 1.268 13 N -0.667 5.667 14 C 0.504 3.496 15 O -0.535 6.535 16 C 0.521 3.479 17 O -0.501 6.501 18 N -0.618 5.618 19 C 0.280 3.720 20 C -0.229 4.229 21 C -0.056 4.056 22 C 0.060 3.940 23 N -0.295 5.295 24 N -0.375 5.375 25 C 0.156 3.844 26 C -0.182 4.182 27 C -0.182 4.182 28 C -0.154 4.154 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.258 0.742 35 H 0.408 0.592 36 H 0.430 0.570 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.218 0.782 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.678 9.392 9.514 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.056 0.944 5 C -0.665 4.665 6 H 0.055 0.945 7 C -0.202 4.202 8 N -0.553 5.553 9 Si 0.891 3.109 10 H -0.209 1.209 11 H -0.168 1.168 12 H -0.193 1.193 13 N -0.316 5.316 14 C 0.284 3.716 15 O -0.414 6.414 16 C 0.302 3.698 17 O -0.372 6.372 18 N -0.271 5.271 19 C 0.062 3.938 20 C -0.242 4.242 21 C -0.114 4.114 22 C -0.125 4.125 23 N -0.117 5.117 24 N -0.162 5.162 25 C 0.036 3.964 26 C -0.202 4.202 27 C -0.218 4.218 28 C -0.191 4.191 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.244 0.756 36 H 0.270 0.730 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.234 0.766 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.107 10.160 7.792 24.687 hybrid contribution 1.061 -0.298 1.681 2.011 sum -20.046 9.862 9.474 24.266 Atomic orbital electron populations 1.21813 0.95029 1.00928 1.01635 1.22188 0.95722 0.97671 1.01604 1.18990 0.93936 0.90082 0.81961 0.94371 1.22183 0.91352 1.49996 1.02934 0.94549 1.26889 0.97718 0.91045 1.04550 1.70993 1.10895 1.40337 1.33125 0.83702 0.75647 0.78827 0.72675 1.20928 1.16751 1.19347 1.46045 1.14200 1.53267 1.18068 1.19721 0.83645 0.80635 0.87605 1.90734 1.50029 1.59316 1.41316 1.20345 0.81698 0.79425 0.88309 1.90816 1.49677 1.55998 1.40741 1.42123 1.15325 1.51546 1.18095 1.17712 1.01805 0.86515 0.87769 1.20059 1.12191 1.01739 0.90250 1.19999 0.99566 0.91034 1.00765 1.24088 0.96693 0.90169 1.01583 1.77371 1.25451 1.23441 0.85461 1.49026 1.49164 1.11892 1.06094 1.21484 0.94308 0.95629 0.84990 1.22539 0.94932 1.08395 0.94296 1.23235 1.04246 0.97312 0.97049 1.23070 1.02395 0.93685 0.99962 0.93443 0.93097 0.92242 0.92105 0.92881 0.93216 0.75643 0.72965 0.92195 0.89959 0.94330 0.76581 0.87340 0.88554 0.88164 0.88193 0.87993 0.87336 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 8.54 71.98 0.61 -4.10 16 2 C -0.13 -5.41 5.33 30.60 0.16 -5.25 16 3 C 0.25 11.29 1.82 44.25 0.08 11.38 16 4 H 0.04 1.78 6.13 -2.39 -0.01 1.76 16 5 C -0.63 -33.18 8.95 25.60 0.23 -32.95 16 6 H 0.04 2.09 7.96 -2.91 -0.02 2.06 16 7 C 0.00 -0.01 5.22 84.66 0.44 0.43 16 8 N -0.92 -54.36 13.70 21.45 0.29 -54.06 16 9 Si 1.07 47.42 26.43 68.60 1.81 49.23 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.24 -9.64 6.10 99.48 0.61 -9.04 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 N -0.67 -25.92 5.03 -447.56 -2.25 -28.17 16 14 C 0.50 17.39 6.51 87.23 0.57 17.96 16 15 O -0.54 -19.10 13.62 -3.31 -0.05 -19.15 16 16 C 0.52 15.82 7.01 87.23 0.61 16.43 16 17 O -0.50 -16.87 13.14 -3.39 -0.04 -16.91 16 18 N -0.62 -15.43 5.16 -309.58 -1.60 -17.03 16 19 C 0.28 7.10 7.10 131.25 0.93 8.03 16 20 C -0.23 -5.66 5.72 -19.98 -0.11 -5.77 16 21 C -0.06 -1.31 8.49 71.24 0.61 -0.70 16 22 C 0.06 1.28 11.94 85.19 1.02 2.30 16 23 N -0.30 -7.10 12.56 -57.13 -0.72 -7.82 16 24 N -0.37 -8.62 3.64 -344.67 -1.25 -9.87 16 25 C 0.16 2.70 6.70 86.38 0.58 3.28 16 26 C -0.18 -2.69 6.01 -10.79 -0.06 -2.75 16 27 C -0.18 -2.36 10.18 30.62 0.31 -2.05 16 28 C -0.15 -1.68 10.26 30.62 0.31 -1.37 16 29 H 0.05 1.60 5.62 -2.39 -0.01 1.59 16 30 H 0.05 1.78 7.91 -2.38 -0.02 1.76 16 31 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 2.58 5.43 -2.39 -0.01 2.56 16 33 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.26 15.43 8.73 -92.71 -0.81 14.62 16 35 H 0.41 15.66 7.99 -92.71 -0.74 14.92 16 36 H 0.43 9.29 8.30 -92.71 -0.77 8.52 16 37 H 0.06 1.55 7.52 -2.39 -0.02 1.54 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.04 0.99 6.95 -2.39 -0.02 0.98 16 40 H 0.22 2.93 8.06 -2.91 -0.02 2.90 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.10 1.58 7.74 -2.39 -0.02 1.56 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -64.33 384.86 1.85 -62.48 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.63 Total: 36.43 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.29 Total: 4.88 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -5.53 Total: -116.96 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.09 Total: -36.06 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.81 Total: 49.23 kcal Total: -64.33 1.85 -62.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324357321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.058 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds