Wall clock time and date at job start Tue Mar 31 2020 19:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47258 * 2 1 4 4 H 1.09003 * 109.47033 * 54.99566 * 3 2 1 5 5 C 1.50700 * 109.47274 * 175.00183 * 3 2 1 6 6 H 1.08003 * 120.00117 * 120.00273 * 5 3 2 7 7 C 1.37874 * 119.99955 * 299.99789 * 5 3 2 8 8 N 1.31519 * 119.99753 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00143 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46703 * 90.00357 * 9 7 5 11 11 H 1.48496 * 109.47601 * 210.00152 * 9 7 5 12 12 H 1.48501 * 109.47367 * 330.00909 * 9 7 5 13 13 N 1.46503 * 109.47289 * 295.00222 * 3 2 1 14 14 C 1.34778 * 119.99997 * 84.99376 * 13 3 2 15 15 O 1.21362 * 120.00085 * 0.02562 * 14 13 3 16 16 C 1.49310 * 120.00072 * 180.02562 * 14 13 3 17 17 O 1.21385 * 119.99647 * 0.02562 * 16 14 13 18 18 N 1.34772 * 119.99953 * 180.02562 * 16 14 13 19 19 C 1.39197 * 120.00003 * 173.85182 * 18 16 14 20 20 C 1.36220 * 126.27146 * 329.18261 * 19 18 16 21 21 C 1.50703 * 126.06757 * 359.94626 * 20 19 18 22 22 C 1.39685 * 107.85986 * 179.97438 * 20 19 18 23 23 N 1.30850 * 108.46127 * 0.02562 * 22 20 19 24 24 N 1.35850 * 126.27583 * 148.87487 * 19 18 16 25 25 C 1.46504 * 126.09688 * 0.03437 * 24 19 18 26 26 C 1.53001 * 109.47205 * 85.36843 * 25 24 19 27 27 C 1.52996 * 117.50460 * 243.64609 * 26 25 24 28 28 C 1.52996 * 117.49843 * 174.98123 * 26 25 24 29 29 H 1.09007 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46870 * 299.99900 * 1 2 3 31 31 H 1.08995 * 109.47637 * 60.00069 * 1 2 3 32 32 H 1.09007 * 109.47048 * 240.00130 * 2 1 3 33 33 H 1.08997 * 109.47174 * 120.00536 * 2 1 3 34 34 H 0.97005 * 119.99625 * 179.97438 * 8 7 5 35 35 H 0.96997 * 120.00028 * 265.00338 * 13 3 2 36 36 H 0.97005 * 120.00394 * 353.85048 * 18 16 14 37 37 H 1.09005 * 109.47160 * 95.56138 * 21 20 19 38 38 H 1.08996 * 109.46824 * 215.55604 * 21 20 19 39 39 H 1.08999 * 109.47429 * 335.56294 * 21 20 19 40 40 H 1.07999 * 125.77100 * 180.02562 * 22 20 19 41 41 H 1.09000 * 109.47434 * 205.37145 * 25 24 19 42 42 H 1.09000 * 109.46912 * 325.37481 * 25 24 19 43 43 H 1.09009 * 115.54911 * 29.31652 * 26 25 24 44 44 H 1.09009 * 117.49418 * 359.97438 * 27 26 25 45 45 H 1.08997 * 117.50316 * 145.01537 * 27 26 25 46 46 H 1.09004 * 117.49999 * 214.97860 * 28 26 25 47 47 H 1.08996 * 117.50307 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8800 1.3810 10 1 6.4427 2.1129 2.0836 11 1 6.4391 -0.3110 2.1544 12 1 6.6132 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3398 2.6325 -0.4335 16 6 0.0399 3.3315 -2.6429 17 8 0.8148 3.3628 -3.5767 18 7 -1.1772 3.8987 -2.7578 19 6 -1.4993 4.6304 -3.8973 20 6 -0.6334 5.3494 -4.6648 21 6 0.8481 5.4961 -4.4307 22 6 -1.3627 5.9270 -5.7068 23 7 -2.6167 5.5759 -5.5792 24 7 -2.7336 4.7537 -4.4512 25 6 -3.9676 4.1396 -3.9549 26 6 -4.5872 5.0359 -2.8808 27 6 -4.6898 4.4715 -1.4624 28 6 -5.9496 4.6258 -2.3182 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0619 2.9494 35 1 2.2719 2.1231 -1.9978 36 1 -1.8289 3.7971 -2.0465 37 1 1.3854 4.7637 -5.0333 38 1 1.1628 6.5005 -4.7138 39 1 1.0675 5.3302 -3.3761 40 1 -0.9596 6.5569 -6.4860 41 1 -4.6712 4.0205 -4.7789 42 1 -3.7408 3.1632 -3.5267 43 1 -4.3859 6.1022 -2.9848 44 1 -4.3161 3.4613 -1.2946 45 1 -4.5562 5.1663 -0.6333 46 1 -6.6444 5.4222 -2.0515 47 1 -6.4047 3.7177 -2.7134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324357324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:43 Heat of formation + Delta-G solvation = 25.202425 kcal Electronic energy + Delta-G solvation = -29429.502331 eV Core-core repulsion = 25421.860118 eV Total energy + Delta-G solvation = -4007.642213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.83788 -41.49038 -39.77466 -38.54398 -37.24490 -36.12329 -34.36469 -34.16839 -32.82627 -31.83878 -29.27337 -28.89798 -26.62583 -26.14178 -24.76946 -23.40850 -22.73709 -22.49448 -21.58867 -21.31020 -20.58198 -20.04877 -18.77286 -18.20161 -17.62658 -17.38426 -17.02964 -16.54700 -16.44545 -16.04539 -15.70553 -15.68269 -15.09124 -14.92409 -14.63233 -14.61203 -14.16900 -13.89258 -13.65451 -13.55553 -13.39304 -13.21927 -13.11436 -12.95234 -12.72973 -12.69342 -12.50697 -12.42812 -12.16178 -12.11429 -12.06090 -11.59724 -11.49745 -11.42408 -11.10124 -11.07775 -10.62860 -10.52570 -10.00668 -9.84812 -9.11358 -8.17841 -6.34370 0.05783 0.74356 0.94653 1.46139 1.47468 1.56977 1.65227 1.75315 2.18399 2.39632 2.63656 2.77801 3.12518 3.45735 3.47393 3.60500 3.88976 3.94294 4.07929 4.18311 4.25645 4.46180 4.47320 4.49607 4.55538 4.68472 4.70959 4.72018 4.75514 4.96222 4.98897 5.02736 5.10425 5.17614 5.19448 5.22656 5.30874 5.35400 5.39457 5.56757 5.62721 5.70851 5.77431 5.80622 5.89572 6.12372 6.48098 6.64693 6.67760 6.76132 7.09100 7.37446 8.87215 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003026 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.847788 B = 9249.827349 C =10580.152693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.278 3.722 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.069 0.931 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.264 1.264 13 N -0.667 5.667 14 C 0.501 3.499 15 O -0.544 6.544 16 C 0.514 3.486 17 O -0.487 6.487 18 N -0.617 5.617 19 C 0.289 3.711 20 C -0.244 4.244 21 C -0.049 4.049 22 C 0.065 3.935 23 N -0.299 5.299 24 N -0.378 5.378 25 C 0.157 3.843 26 C -0.186 4.186 27 C -0.188 4.188 28 C -0.148 4.148 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.267 0.733 35 H 0.409 0.591 36 H 0.428 0.572 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.035 0.965 40 H 0.217 0.783 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 8.211 -12.048 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.087 0.913 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.188 1.188 13 N -0.317 5.317 14 C 0.281 3.719 15 O -0.423 6.423 16 C 0.296 3.704 17 O -0.358 6.358 18 N -0.268 5.268 19 C 0.070 3.930 20 C -0.258 4.258 21 C -0.107 4.107 22 C -0.120 4.120 23 N -0.120 5.120 24 N -0.166 5.166 25 C 0.036 3.964 26 C -0.206 4.206 27 C -0.224 4.224 28 C -0.185 4.185 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.245 0.755 36 H 0.267 0.733 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.234 0.766 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.495 8.088 -12.256 21.347 hybrid contribution 1.627 -0.207 0.935 1.888 sum -13.868 7.881 -11.320 19.559 Atomic orbital electron populations 1.21710 0.96528 0.99683 1.00446 1.21827 0.94194 0.98565 1.01726 1.18640 0.94051 0.89538 0.80225 0.96579 1.21523 0.91250 1.39419 1.06867 0.91266 1.25651 1.03009 0.94221 0.94959 1.70009 1.36943 1.37998 1.09779 0.85427 0.79435 0.77511 0.78492 1.20369 1.20841 1.18849 1.46209 1.14155 1.52856 1.18445 1.19756 0.83861 0.80871 0.87447 1.90741 1.51531 1.59782 1.40256 1.20289 0.81751 0.79565 0.88818 1.90856 1.50993 1.54573 1.39398 1.42183 1.16113 1.50342 1.18207 1.17811 0.87879 0.96981 0.90318 1.19984 0.97823 1.06888 1.01087 1.20090 0.89009 1.01018 1.00591 1.24052 0.89636 0.99479 0.98867 1.77372 1.20249 1.12312 1.02077 1.48910 1.05786 1.41116 1.20748 1.21511 0.82562 0.94626 0.97658 1.22600 1.03225 0.99684 0.95064 1.23244 1.03069 1.02803 0.93332 1.23066 0.89728 1.04175 1.01556 0.93297 0.94464 0.94052 0.94144 0.90322 0.92417 0.75495 0.73320 0.91551 0.90911 0.94607 0.76608 0.86537 0.88447 0.88431 0.88094 0.88476 0.87435 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.51 71.98 0.61 -4.52 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.41 2.24 44.24 0.10 13.51 16 4 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 5 C -0.55 -28.23 8.73 25.60 0.22 -28.00 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -49.50 11.29 21.45 0.24 -49.26 16 9 Si 0.97 41.00 29.54 68.60 2.03 43.03 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 13 N -0.67 -26.89 5.01 -447.57 -2.24 -29.14 16 14 C 0.50 18.62 6.45 87.23 0.56 19.19 16 15 O -0.54 -21.99 13.62 -3.28 -0.04 -22.03 16 16 C 0.51 16.34 6.84 87.23 0.60 16.93 16 17 O -0.49 -16.21 11.65 -3.35 -0.04 -16.25 16 18 N -0.62 -16.64 5.31 -309.59 -1.64 -18.29 16 19 C 0.29 7.70 7.38 131.25 0.97 8.66 16 20 C -0.24 -6.41 5.79 -19.98 -0.12 -6.52 16 21 C -0.05 -1.28 8.25 71.24 0.59 -0.69 16 22 C 0.07 1.45 11.94 85.19 1.02 2.47 16 23 N -0.30 -7.31 12.56 -57.14 -0.72 -8.03 16 24 N -0.38 -8.86 3.64 -344.65 -1.25 -10.11 16 25 C 0.16 2.66 6.64 86.38 0.57 3.23 16 26 C -0.19 -2.90 6.01 -10.80 -0.06 -2.97 16 27 C -0.19 -2.76 10.18 30.62 0.31 -2.45 16 28 C -0.15 -1.69 10.25 30.62 0.31 -1.38 16 29 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.04 1.60 7.85 -2.39 -0.02 1.58 16 31 H 0.04 1.59 5.65 -2.39 -0.01 1.58 16 32 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.08 4.07 5.95 -2.39 -0.01 4.06 16 34 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 35 H 0.41 15.33 8.01 -92.71 -0.74 14.59 16 36 H 0.43 10.43 8.28 -92.70 -0.77 9.66 16 37 H 0.07 1.83 7.16 -2.38 -0.02 1.81 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.03 1.05 6.08 -2.39 -0.01 1.03 16 40 H 0.22 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.10 1.50 7.88 -2.39 -0.02 1.48 16 43 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.10 1.49 8.03 -2.38 -0.02 1.47 16 45 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -61.34 385.61 2.13 -59.21 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.50 Total: 37.37 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 6.30 Total: 13.50 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -5.62 Total: -114.83 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.08 Total: -38.28 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -61.34 2.13 -59.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324357324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.409 kcal (2) G-P(sol) polarization free energy of solvation -61.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds