Wall clock time and date at job start Tue Mar 31 2020 18:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47063 * 2 1 4 4 C 1.50696 * 109.47035 * 240.00224 * 2 1 3 5 5 H 1.08002 * 120.00135 * 241.34160 * 4 2 1 6 6 C 1.37881 * 120.00326 * 61.34536 * 4 2 1 7 7 N 1.31516 * 120.00132 * 193.97285 * 6 4 2 8 8 Si 1.86792 * 119.99745 * 13.97863 * 6 4 2 9 9 H 1.48501 * 109.47646 * 84.54800 * 8 6 4 10 10 H 1.48502 * 109.47334 * 204.55011 * 8 6 4 11 11 H 1.48504 * 109.47184 * 324.54537 * 8 6 4 12 12 C 1.53002 * 109.47165 * 120.00084 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99945 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21363 * 119.99822 * 359.72627 * 14 13 12 16 16 C 1.49307 * 119.99918 * 179.97438 * 14 13 12 17 17 O 1.21398 * 119.99948 * 359.72374 * 16 14 13 18 18 N 1.34774 * 120.00060 * 179.72059 * 16 14 13 19 19 C 1.39196 * 119.99984 * 179.97438 * 18 16 14 20 20 C 1.36215 * 126.27545 * 0.02821 * 19 18 16 21 21 C 1.39689 * 107.86169 * 179.97438 * 20 19 18 22 22 N 1.30845 * 108.46230 * 0.02562 * 21 20 19 23 23 N 1.35863 * 126.27197 * 179.72031 * 19 18 16 24 24 C 1.46496 * 126.09718 * 359.97438 * 23 19 18 25 25 C 1.53785 * 113.61501 * 219.14105 * 24 23 19 26 26 C 1.53959 * 87.01837 * 220.04751 * 25 24 23 27 27 C 1.53778 * 113.61582 * 121.53189 * 24 23 19 28 28 H 1.09004 * 109.46900 * 309.36563 * 1 2 3 29 29 H 1.09006 * 109.47529 * 69.36738 * 1 2 3 30 30 H 1.09000 * 109.47356 * 189.36627 * 1 2 3 31 31 H 1.09005 * 109.47595 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47355 * 300.00165 * 3 2 1 33 33 H 1.09004 * 109.47447 * 60.00003 * 3 2 1 34 34 H 0.96996 * 119.99640 * 179.97438 * 7 6 4 35 35 H 1.09007 * 109.46716 * 179.97438 * 12 2 1 36 36 H 1.08991 * 109.47019 * 60.00152 * 12 2 1 37 37 H 0.97000 * 119.99916 * 359.97438 * 13 12 2 38 38 H 0.97001 * 119.99851 * 0.02562 * 18 16 14 39 39 H 1.07997 * 126.06826 * 0.02562 * 20 19 18 40 40 H 1.08005 * 125.77244 * 180.02562 * 21 20 19 41 41 H 1.09001 * 112.85097 * 350.33206 * 24 23 19 42 42 H 1.09000 * 113.61233 * 334.56883 * 25 24 23 43 43 H 1.09003 * 113.61784 * 105.46928 * 25 24 23 44 44 H 1.08994 * 113.53766 * 270.81118 * 26 25 24 45 45 H 1.09001 * 113.73900 * 139.94101 * 26 25 24 46 46 H 1.08994 * 113.61430 * 254.53173 * 27 24 23 47 47 H 1.09000 * 113.61175 * 25.43040 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6352 -1.6009 -1.1316 6 6 1.7222 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2468 1.5866 -3.9287 11 1 0.1416 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5717 -1.4802 3.7808 16 6 1.3805 0.2133 4.8886 17 8 0.6867 1.2033 4.7772 18 7 1.7018 -0.2501 6.1127 19 6 1.2387 0.4067 7.2492 20 6 0.4569 1.5218 7.2732 21 6 0.2219 1.8516 8.6101 22 7 0.8338 0.9766 9.3665 23 7 1.4789 0.0496 8.5379 24 6 2.2731 -1.0987 8.9816 25 6 1.6834 -1.8195 10.2054 26 6 3.1280 -1.9565 10.7201 27 6 3.4637 -0.7154 9.8763 28 1 -0.3633 0.6518 0.7945 29 1 -0.3634 0.3621 -0.9618 30 1 -0.3634 -1.0139 0.1672 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6973 -0.6299 -4.4268 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 2.2565 -1.0409 6.2016 39 1 0.0841 2.0557 6.4116 40 1 -0.3656 2.6875 8.9604 41 1 2.5387 -1.7704 8.1653 42 1 1.0567 -1.1811 10.8281 43 1 1.2122 -2.7727 9.9656 44 1 3.6271 -2.8637 10.3800 45 1 3.2285 -1.7949 11.7934 46 1 4.4275 -0.7785 9.3712 47 1 3.3245 0.2254 10.4088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348465818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:53 Heat of formation + Delta-G solvation = 56.245547 kcal Electronic energy + Delta-G solvation = -28647.324239 eV Core-core repulsion = 24641.028157 eV Total energy + Delta-G solvation = -4006.296082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.90482 -40.55639 -38.94015 -38.52131 -36.96988 -35.42018 -33.48082 -31.80842 -31.58049 -29.50334 -26.96146 -26.43720 -26.18436 -25.68062 -25.20500 -24.20320 -22.19140 -21.24127 -20.10049 -19.81388 -19.35432 -18.85647 -17.66518 -16.85600 -16.30940 -16.15642 -15.92345 -15.68492 -15.30454 -15.23631 -15.01911 -14.32051 -14.23829 -14.01820 -13.50209 -13.28648 -13.24663 -12.99627 -12.98174 -12.71824 -12.67527 -12.30523 -12.09323 -11.78814 -11.61319 -11.47296 -11.37814 -11.14864 -11.09181 -10.71169 -10.55841 -10.39249 -10.24436 -10.13829 -9.70598 -9.20563 -9.18247 -8.90859 -8.75561 -8.52801 -8.37523 -6.21036 -4.19366 0.98080 1.63918 1.82889 2.46722 2.69445 3.16470 3.21237 3.28861 3.36116 3.45865 3.87906 4.01283 4.16532 4.29787 4.30657 4.38749 4.63958 4.79943 5.08188 5.09551 5.22417 5.26914 5.28548 5.42112 5.44329 5.49063 5.59328 5.62417 5.79009 5.89720 5.95974 5.96862 6.25907 6.30462 6.36126 6.46600 6.49612 6.51919 6.59346 6.61504 6.78961 6.84604 7.10652 7.28269 7.32505 7.52276 7.58242 7.62987 8.00076 8.36648 8.82820 9.42386 10.91655 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.002288 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.525957 B =12234.403027 C =12982.671308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.029 3.971 3 C -0.151 4.151 4 C -0.515 4.515 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.248 1.248 12 C 0.138 3.862 13 N -0.680 5.680 14 C 0.506 3.494 15 O -0.525 6.525 16 C 0.516 3.484 17 O -0.483 6.483 18 N -0.626 5.626 19 C 0.302 3.698 20 C -0.277 4.277 21 C 0.058 3.942 22 N -0.285 5.285 23 N -0.375 5.375 24 C 0.127 3.873 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.143 4.143 28 H 0.024 0.976 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.421 0.579 39 H 0.173 0.827 40 H 0.187 0.813 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 1.677 26.182 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.208 4.208 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.174 1.174 12 C 0.016 3.984 13 N -0.332 5.332 14 C 0.285 3.715 15 O -0.403 6.403 16 C 0.297 3.703 17 O -0.354 6.354 18 N -0.275 5.275 19 C 0.083 3.917 20 C -0.308 4.308 21 C -0.128 4.128 22 N -0.107 5.107 23 N -0.163 5.163 24 C 0.024 3.976 25 C -0.175 4.175 26 C -0.177 4.177 27 C -0.181 4.181 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.259 0.741 39 H 0.191 0.809 40 H 0.204 0.796 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.186 1.165 27.063 27.089 hybrid contribution -0.399 1.125 -1.192 1.687 sum -0.584 2.290 25.871 25.979 Atomic orbital electron populations 1.22334 0.97608 1.00024 1.00366 1.18747 0.92752 0.92392 0.93387 1.22396 1.01294 0.98177 0.98960 1.20648 1.34416 1.12422 0.87833 0.90427 1.24962 0.94576 0.97328 0.95767 1.69941 1.47852 1.35919 0.98776 0.87308 0.79444 0.85435 0.76165 1.21254 1.23305 1.17401 1.21808 0.99177 0.96139 0.81246 1.46197 1.50463 1.31471 1.05039 1.19461 0.82554 0.85181 0.84352 1.90777 1.37688 1.25363 1.86453 1.20562 0.80932 0.84831 0.83940 1.90723 1.34590 1.24126 1.85930 1.42447 1.51372 1.30809 1.02882 1.18144 0.98600 0.94754 0.80205 1.21710 1.09453 1.00572 0.99047 1.23767 0.98656 0.98535 0.91798 1.77341 1.14636 1.02504 1.16246 1.48880 1.42638 1.23643 1.01164 1.23030 0.92219 0.85030 0.97284 1.23327 0.97617 1.00713 0.95841 1.22753 0.96106 0.98114 1.00736 1.23381 0.97288 0.99848 0.97576 0.95671 0.92266 0.93264 0.92625 0.93798 0.94945 0.92452 0.90989 0.90884 0.75162 0.74117 0.80936 0.79622 0.86407 0.88134 0.90564 0.89508 0.90249 0.90507 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 7.53 37.15 0.28 -2.60 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.51 16 3 C -0.15 -2.97 7.52 37.16 0.28 -2.70 16 4 C -0.52 -13.27 8.62 -34.44 -0.30 -13.56 16 5 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 8 Si 0.88 20.64 22.79 -169.99 -3.87 16.76 16 9 H -0.28 -6.64 7.10 56.52 0.40 -6.24 16 10 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.25 -5.28 4.65 56.52 0.26 -5.02 16 12 C 0.14 2.53 4.49 -4.04 -0.02 2.51 16 13 N -0.68 -10.63 5.00 -60.78 -0.30 -10.93 16 14 C 0.51 7.54 7.88 -11.65 -0.09 7.45 16 15 O -0.53 -8.69 16.47 5.49 0.09 -8.60 16 16 C 0.52 6.88 7.85 -11.65 -0.09 6.79 16 17 O -0.48 -7.06 13.60 5.45 0.07 -6.99 16 18 N -0.63 -7.10 5.40 -11.80 -0.06 -7.17 16 19 C 0.30 3.62 7.68 -152.85 -1.17 2.44 16 20 C -0.28 -3.40 9.65 -39.77 -0.38 -3.78 16 21 C 0.06 0.62 12.00 -17.43 -0.21 0.41 16 22 N -0.29 -3.26 12.02 30.59 0.37 -2.89 16 23 N -0.38 -4.02 3.71 -53.01 -0.20 -4.21 16 24 C 0.13 0.99 4.63 -67.12 -0.31 0.68 16 25 C -0.14 -0.92 7.78 -25.82 -0.20 -1.12 16 26 C -0.14 -0.73 8.09 -25.82 -0.21 -0.94 16 27 C -0.14 -0.96 7.88 -25.92 -0.20 -1.17 16 28 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 29 H 0.06 1.25 4.30 -51.93 -0.22 1.03 16 30 H 0.05 0.95 8.12 -51.93 -0.42 0.52 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.92 2.25 -51.93 -0.12 0.80 16 33 H 0.03 0.54 6.86 -51.93 -0.36 0.18 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.41 6.09 5.73 -40.82 -0.23 5.86 16 38 H 0.42 3.98 7.21 -40.82 -0.29 3.69 16 39 H 0.17 2.26 5.83 -52.49 -0.31 1.95 16 40 H 0.19 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.12 0.73 7.15 -51.93 -0.37 0.36 16 42 H 0.10 0.81 7.74 -51.93 -0.40 0.41 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -30.51 371.04 -6.94 -37.45 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.59 Total: 9.21 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.80 Total: -3.09 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.58 Total: -50.33 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.16 Total: -15.59 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -3.87 Total: 16.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.51 -6.94 -37.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348465818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.692 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds