Wall clock time and date at job start Tue Mar 31 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 C 1.52994 * 109.47216 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47082 * 184.77617 * 4 3 2 6 6 N 1.46503 * 115.54770 * 304.71931 * 5 4 3 7 7 C 1.34777 * 119.99854 * 294.61173 * 6 5 4 8 8 O 1.21364 * 120.00250 * 354.99351 * 7 6 5 9 9 C 1.49338 * 119.99771 * 175.00012 * 7 6 5 10 10 O 1.21383 * 120.00108 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00161 * 179.97438 * 9 7 6 12 12 C 1.39928 * 120.00273 * 179.97438 * 11 9 7 13 13 C 1.40466 * 125.97965 * 359.97438 * 12 11 9 14 14 C 1.35217 * 107.86841 * 179.97438 * 13 12 11 15 15 N 1.34992 * 107.87394 * 0.22936 * 14 13 12 16 16 C 1.46503 * 125.97136 * 179.73641 * 15 14 13 17 17 C 1.50695 * 109.47294 * 124.99626 * 16 15 14 18 18 H 1.08004 * 119.99864 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00233 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99801 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00511 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46861 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47275 * 119.99926 * 21 19 17 24 24 H 1.48494 * 109.47373 * 240.00447 * 21 19 17 25 25 N 1.31278 * 125.98283 * 179.97438 * 12 11 9 26 26 C 1.52998 * 117.50013 * 90.39147 * 5 4 3 27 27 C 1.53000 * 117.49816 * 159.05480 * 5 4 3 28 28 H 1.08995 * 109.47275 * 59.99813 * 1 2 3 29 29 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47012 * 299.99735 * 1 2 3 31 31 H 1.08996 * 109.47012 * 240.00265 * 2 1 3 32 32 H 1.08991 * 109.47058 * 119.99747 * 2 1 3 33 33 H 1.09003 * 109.47254 * 59.99945 * 3 2 1 34 34 H 1.09003 * 109.46986 * 300.00107 * 3 2 1 35 35 H 1.08996 * 109.47222 * 64.76971 * 4 3 2 36 36 H 1.09007 * 109.46745 * 304.77088 * 4 3 2 37 37 H 0.96999 * 119.99751 * 114.61450 * 6 5 4 38 38 H 0.96999 * 120.00154 * 359.97438 * 11 9 7 39 39 H 1.07999 * 126.06590 * 359.95944 * 13 12 11 40 40 H 1.07993 * 126.05967 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.46678 * 245.00208 * 16 15 14 42 42 H 1.09006 * 109.46778 * 4.99885 * 16 15 14 43 43 H 0.96998 * 120.00339 * 180.02562 * 20 19 17 44 44 H 1.08996 * 117.49748 * 214.99917 * 26 5 4 45 45 H 1.09002 * 117.50191 * 0.02562 * 26 5 4 46 46 H 1.08997 * 117.49946 * 359.97066 * 27 5 4 47 47 H 1.08995 * 117.50055 * 144.97027 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8801 0.1195 6 7 3.5803 3.8144 -0.8924 7 6 3.9137 3.6468 -2.1874 8 8 4.6997 2.7780 -2.5042 9 6 3.3161 4.5303 -3.2327 10 8 2.5297 5.3990 -2.9159 11 7 3.6499 4.3631 -4.5277 12 6 3.0895 5.1906 -5.5071 13 6 2.1707 6.2292 -5.2830 14 6 1.8741 6.7859 -6.4790 15 7 2.5713 6.1256 -7.4277 16 6 2.5408 6.4012 -8.8663 17 6 3.9435 6.6424 -9.3614 18 1 4.7746 6.5956 -8.6733 19 6 4.1660 6.9229 -10.6929 20 7 3.1539 6.9804 -11.5308 21 14 5.9047 7.2212 -11.3069 22 1 6.8573 7.0998 -10.1740 23 1 6.2420 6.2157 -12.3464 24 1 5.9974 8.5844 -11.8882 25 7 3.3304 5.1321 -6.7963 26 6 4.3247 3.4276 1.5270 27 6 5.5106 3.0824 0.6226 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9329 1.0048 -0.9304 36 1 3.9336 0.8564 0.8434 37 1 3.0095 4.5536 -0.6302 38 1 4.2786 3.6692 -4.7808 39 1 1.7719 6.5296 -4.3254 40 1 1.1961 7.6098 -6.6460 41 1 2.1121 5.5472 -9.3907 42 1 1.9322 7.2858 -9.0539 43 1 3.3103 7.1773 -12.4676 44 1 4.1141 4.4829 1.7002 45 1 4.1229 2.7636 2.3675 46 1 6.0883 2.1915 0.8685 47 1 6.0802 3.9104 0.2006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349248255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:17 Heat of formation + Delta-G solvation = 26.333674 kcal Electronic energy + Delta-G solvation = -27925.234390 eV Core-core repulsion = 23917.641232 eV Total energy + Delta-G solvation = -4007.593158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15949 -40.37830 -39.06798 -37.73777 -35.41120 -35.05945 -33.43409 -33.03633 -31.05073 -30.26906 -29.42877 -27.10422 -25.60720 -24.57546 -23.13468 -22.86830 -21.71939 -21.34308 -20.54431 -19.82160 -19.69189 -18.33620 -16.94178 -16.62911 -16.43157 -16.32908 -16.07872 -15.58217 -15.24506 -15.13678 -14.52837 -14.30488 -14.16765 -14.11348 -13.64820 -13.46247 -13.38573 -12.96639 -12.55101 -12.42922 -12.31418 -12.00917 -11.90806 -11.83148 -11.69009 -11.56690 -11.33179 -11.08208 -10.93528 -10.91008 -10.86648 -10.55794 -10.44568 -10.28835 -10.02362 -9.54944 -9.52506 -9.41328 -8.66140 -8.24423 -7.59552 -6.26912 -4.31985 1.18745 1.98263 2.64918 3.00398 3.12668 3.21672 3.27952 3.29411 3.36454 3.65119 3.80892 4.09490 4.29099 4.36531 4.38769 4.48603 4.67556 4.77337 4.84184 5.07085 5.08549 5.19636 5.20926 5.36694 5.41358 5.43433 5.50631 5.53873 5.65267 5.68764 5.69964 5.74901 5.84821 5.95423 6.05545 6.08556 6.11089 6.30986 6.39918 6.78026 6.89645 7.01064 7.22857 7.35581 7.62780 7.68658 7.83850 7.93890 7.96412 8.52785 8.76980 9.34020 10.81966 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.002132 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.529284 B =13132.385598 C =13697.311420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.091 4.091 5 C 0.101 3.899 6 N -0.671 5.671 7 C 0.520 3.480 8 O -0.506 6.506 9 C 0.512 3.488 10 O -0.500 6.500 11 N -0.598 5.598 12 C 0.250 3.750 13 C -0.286 4.286 14 C 0.053 3.947 15 N -0.314 5.314 16 C 0.257 3.743 17 C -0.529 4.529 18 H 0.070 0.930 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.294 5.294 26 C -0.168 4.168 27 C -0.170 4.170 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.415 0.585 38 H 0.423 0.577 39 H 0.161 0.839 40 H 0.171 0.829 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.267 0.733 44 H 0.101 0.899 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 -9.168 26.894 28.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.129 4.129 5 C 0.014 3.986 6 N -0.324 5.324 7 C 0.300 3.700 8 O -0.380 6.380 9 C 0.292 3.708 10 O -0.373 6.373 11 N -0.246 5.246 12 C -0.003 4.003 13 C -0.317 4.317 14 C -0.097 4.097 15 N -0.096 5.096 16 C 0.139 3.861 17 C -0.567 4.567 18 H 0.088 0.912 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 N -0.125 5.125 26 C -0.206 4.206 27 C -0.208 4.208 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.252 0.748 38 H 0.260 0.740 39 H 0.178 0.822 40 H 0.188 0.812 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.796 -9.727 25.631 27.474 hybrid contribution 0.484 0.720 0.024 0.868 sum -1.312 -9.007 25.655 27.222 Atomic orbital electron populations 1.21773 0.95812 1.01569 1.01913 1.21525 0.95976 0.96743 1.01979 1.21544 0.94595 0.96915 1.02334 1.21369 0.95906 0.92033 1.03580 1.20730 0.98551 0.90786 0.88559 1.45005 1.51599 1.30816 1.04990 1.19887 0.82068 0.84466 0.83571 1.90784 1.32523 1.33364 1.81289 1.19935 0.82918 0.84948 0.83028 1.90708 1.33046 1.32595 1.80969 1.41991 1.44293 1.34323 1.04003 1.19016 0.98169 0.94655 0.88421 1.21512 1.08221 1.02532 0.99412 1.22583 0.99081 0.99363 0.88641 1.49177 1.29445 1.22110 1.08912 1.19807 0.99651 0.97896 0.68705 1.21286 0.92047 1.49069 0.94338 0.91199 1.24947 0.98098 0.94775 0.96268 1.69923 1.30633 1.48395 1.04345 0.86266 0.83548 0.77841 0.78828 1.19531 1.20651 1.20749 1.77413 1.18837 1.12955 1.03323 1.23392 1.02293 1.02520 0.92348 1.23385 0.91049 1.04052 1.02293 0.92626 0.92827 0.92805 0.91964 0.92117 0.91844 0.91958 0.90155 0.90537 0.74780 0.73958 0.82176 0.81228 0.93534 0.92365 0.92338 0.88053 0.87461 0.87794 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.86 5.93 -26.73 -0.16 -1.02 16 3 C -0.12 -0.86 5.01 -26.73 -0.13 -0.99 16 4 C -0.09 -0.69 5.03 -26.73 -0.13 -0.82 16 5 C 0.10 0.79 1.68 -131.82 -0.22 0.56 16 6 N -0.67 -6.23 5.00 -48.07 -0.24 -6.47 16 7 C 0.52 6.41 7.74 -11.64 -0.09 6.32 16 8 O -0.51 -7.14 15.61 5.48 0.09 -7.06 16 9 C 0.51 7.44 7.85 -11.64 -0.09 7.35 16 10 O -0.50 -7.80 13.61 5.47 0.07 -7.73 16 11 N -0.60 -9.77 5.43 -11.58 -0.06 -9.83 16 12 C 0.25 4.99 8.10 -154.55 -1.25 3.73 16 13 C -0.29 -5.43 9.60 -39.82 -0.38 -5.81 16 14 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 15 N -0.31 -7.19 3.67 -62.56 -0.23 -7.42 16 16 C 0.26 6.43 6.26 -5.19 -0.03 6.40 16 17 C -0.53 -14.62 9.23 -34.44 -0.32 -14.94 16 18 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 21 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 N -0.29 -6.75 12.42 31.41 0.39 -6.36 16 26 C -0.17 -0.92 10.15 -26.69 -0.27 -1.19 16 27 C -0.17 -1.23 10.18 -26.69 -0.27 -1.50 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 35 H 0.08 0.79 7.33 -51.93 -0.38 0.40 16 36 H 0.08 0.46 8.10 -51.92 -0.42 0.03 16 37 H 0.41 3.36 8.31 -40.82 -0.34 3.02 16 38 H 0.42 6.37 8.29 -40.82 -0.34 6.03 16 39 H 0.16 2.85 5.91 -52.49 -0.31 2.54 16 40 H 0.17 2.62 8.06 -52.49 -0.42 2.19 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -31.50 401.18 -8.74 -40.25 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.24 Total: 6.82 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.28 Total: -0.15 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.59 Total: -54.51 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.16 Total: -14.79 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.50 -8.74 -40.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349248255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.581 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds