Wall clock time and date at job start Tue Mar 31 2020 19:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47418 * 2 1 4 4 H 1.08997 * 109.46808 * 305.00355 * 3 2 1 5 5 C 1.53000 * 109.47391 * 185.00284 * 3 2 1 6 6 N 1.46500 * 109.46756 * 65.00108 * 3 2 1 7 7 C 1.34777 * 119.99650 * 205.00057 * 6 3 2 8 8 O 1.21285 * 120.00135 * 0.02562 * 7 6 3 9 9 C 1.50700 * 119.99982 * 180.02562 * 7 6 3 10 10 C 1.52996 * 109.47251 * 180.02562 * 9 7 6 11 11 N 1.46506 * 109.47229 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99960 * 180.02562 * 11 10 9 13 13 O 1.21568 * 120.00083 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99623 * 179.97438 * 12 11 10 15 15 C 1.39247 * 119.99999 * 185.64179 * 14 12 11 16 16 C 1.39680 * 119.57978 * 175.00272 * 15 14 12 17 17 C 1.38645 * 119.49641 * 180.02562 * 16 15 14 18 18 C 1.38356 * 118.67249 * 359.74205 * 17 16 15 19 19 C 1.40575 * 119.12726 * 0.50179 * 18 17 16 20 20 C 1.41330 * 119.78336 * 179.77140 * 19 18 17 21 21 H 1.07997 * 120.00434 * 6.08415 * 20 19 18 22 22 C 1.40031 * 119.99856 * 186.09020 * 20 19 18 23 23 N 1.30747 * 119.99962 * 6.10923 * 22 20 19 24 24 Si 1.86803 * 120.00091 * 186.10895 * 22 20 19 25 25 H 1.48501 * 109.46946 * 265.00223 * 24 22 20 26 26 H 1.48505 * 109.46856 * 25.00133 * 24 22 20 27 27 H 1.48501 * 109.47016 * 145.00089 * 24 22 20 28 28 N 1.31910 * 119.57377 * 355.01759 * 15 14 12 29 29 H 1.09000 * 109.47141 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46952 * 299.99716 * 1 2 3 31 31 H 1.08999 * 109.47336 * 59.99666 * 1 2 3 32 32 H 1.09000 * 109.46924 * 239.99971 * 2 1 3 33 33 H 1.08999 * 109.47336 * 120.00334 * 2 1 3 34 34 H 1.09008 * 109.46829 * 300.00104 * 5 3 2 35 35 H 1.09000 * 109.46924 * 59.99405 * 5 3 2 36 36 H 1.09000 * 109.47114 * 179.97438 * 5 3 2 37 37 H 0.96999 * 120.00398 * 25.00247 * 6 3 2 38 38 H 1.09005 * 109.47270 * 60.00106 * 9 7 6 39 39 H 1.08994 * 109.47172 * 300.00070 * 9 7 6 40 40 H 1.08994 * 109.47514 * 60.00231 * 10 9 7 41 41 H 1.09004 * 109.47427 * 299.99691 * 10 9 7 42 42 H 0.97004 * 119.99564 * 359.97438 * 11 10 9 43 43 H 0.97003 * 120.00235 * 5.63483 * 14 12 11 44 44 H 1.08002 * 120.25031 * 359.97438 * 16 15 14 45 45 H 1.08003 * 120.66175 * 180.02562 * 17 16 15 46 46 H 1.08002 * 120.43436 * 180.24534 * 18 17 16 47 47 H 0.96993 * 119.99820 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6525 2.0974 1.2518 7 6 1.5257 3.4384 1.2996 8 8 1.7320 4.1028 0.3061 9 6 1.1276 4.1122 2.5875 10 6 1.0556 5.6250 2.3705 11 7 0.6691 6.2801 3.6227 12 6 0.5415 7.6209 3.6702 13 8 0.7465 8.2868 2.6739 14 7 0.1855 8.2235 4.8220 15 6 -0.0609 9.5938 4.8436 16 6 -0.5303 10.1915 6.0156 17 6 -0.7756 11.5560 6.0351 18 6 -0.5407 12.2891 4.8855 19 6 -0.0731 11.6285 3.7362 20 6 0.1668 12.3631 2.5529 21 1 0.0859 13.4400 2.5600 22 6 0.5094 11.6946 1.3711 23 7 0.4910 10.3879 1.3303 24 14 0.9927 12.6697 -0.1472 25 1 -0.1975 12.8555 -1.0157 26 1 1.5180 13.9967 0.2634 27 1 2.0417 11.9321 -0.8960 28 7 0.1516 10.3108 3.7570 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9995 0.9052 0.7161 35 1 3.8531 0.9569 -1.0571 36 1 3.9281 2.4720 -0.1262 37 1 1.4872 1.5660 2.0463 38 1 1.8666 3.8900 3.3574 39 1 0.1516 3.7440 2.9036 40 1 0.3164 5.8469 1.6008 41 1 2.0314 5.9936 2.0542 42 1 0.5045 5.7486 4.4173 43 1 0.1008 7.7026 5.6359 44 1 -0.7016 9.5952 6.8996 45 1 -1.1384 12.0376 6.9311 46 1 -0.7183 13.3543 4.8702 47 1 0.7286 9.9249 0.5118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364468941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:46 Heat of formation + Delta-G solvation = -19.613366 kcal Electronic energy + Delta-G solvation = -28138.736671 eV Core-core repulsion = 24129.151100 eV Total energy + Delta-G solvation = -4009.585571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.15605 -39.34188 -37.68292 -36.81231 -34.76425 -33.85451 -32.90696 -32.72397 -30.89796 -30.21746 -29.83867 -28.61032 -25.51243 -24.59347 -23.67669 -21.87499 -21.23219 -21.04039 -20.64243 -19.77639 -18.04536 -17.24811 -17.09460 -16.45777 -16.07949 -15.93219 -14.86752 -14.75036 -14.45829 -14.40079 -14.30018 -14.18493 -13.80523 -13.71637 -13.50827 -13.31120 -13.06970 -12.73334 -12.58204 -12.18353 -12.10673 -11.85928 -11.77474 -11.71053 -11.49977 -11.37162 -11.09021 -11.06725 -10.86130 -10.57735 -10.39435 -10.00371 -9.88175 -9.57872 -9.34784 -9.05637 -8.93238 -8.41716 -7.88836 -7.12905 -6.86919 -6.07321 -4.29595 2.48860 2.79035 2.92184 3.20284 3.25439 3.28374 3.34867 3.42540 4.15428 4.27906 4.30412 4.54371 4.60040 4.64794 4.80726 4.95696 4.96955 5.03478 5.05683 5.17832 5.21793 5.29681 5.38755 5.50044 5.52478 5.73247 5.80949 5.92216 6.05431 6.10500 6.15630 6.20649 6.28270 6.54549 6.68433 6.86661 6.92202 7.01066 7.23461 7.32509 7.43371 7.69333 7.81522 7.88705 8.05215 8.24838 8.38291 8.73547 8.88994 9.13920 9.66630 10.34864 10.57912 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002466 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.909893 B =11350.300175 C =12973.440664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.139 3.861 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.729 5.729 7 C 0.518 3.482 8 O -0.527 6.527 9 C -0.152 4.152 10 C 0.161 3.839 11 N -0.762 5.762 12 C 0.664 3.336 13 O -0.461 6.461 14 N -0.673 5.673 15 C 0.387 3.613 16 C -0.360 4.360 17 C -0.035 4.035 18 C -0.308 4.308 19 C 0.272 3.728 20 C -0.426 4.426 21 H 0.082 0.918 22 C 0.058 3.942 23 N -0.651 5.651 24 Si 0.894 3.106 25 H -0.273 1.273 26 H -0.264 1.264 27 H -0.277 1.277 28 N -0.473 5.473 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.398 0.602 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.382 0.618 43 H 0.394 0.606 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -23.574 1.588 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.034 3.966 4 H 0.107 0.893 5 C -0.223 4.223 6 N -0.382 5.382 7 C 0.303 3.697 8 O -0.403 6.403 9 C -0.192 4.192 10 C 0.036 3.964 11 N -0.423 5.423 12 C 0.362 3.638 13 O -0.324 6.324 14 N -0.322 5.322 15 C 0.147 3.853 16 C -0.386 4.386 17 C -0.060 4.060 18 C -0.331 4.331 19 C 0.147 3.853 20 C -0.457 4.457 21 H 0.100 0.900 22 C -0.172 4.172 23 N -0.269 5.269 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.188 1.188 27 H -0.202 1.202 28 N -0.192 5.192 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.214 0.786 43 H 0.227 0.773 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.716 -23.026 -1.130 23.213 hybrid contribution -0.303 -0.189 1.476 1.518 sum 2.413 -23.215 0.346 23.343 Atomic orbital electron populations 1.21783 0.95238 1.01688 1.02427 1.21833 0.96619 0.95410 1.02991 1.21004 0.94946 0.92956 0.87663 0.89313 1.22189 0.95370 1.02875 1.01880 1.46098 1.71571 1.07003 1.13571 1.20493 0.76704 0.82067 0.90402 1.90780 1.48959 1.63836 1.36681 1.21822 1.03913 0.97180 0.96286 1.20651 1.02041 0.87702 0.86051 1.45249 1.78043 1.06076 1.12940 1.16371 0.80897 0.81410 0.85115 1.91379 1.48617 1.60763 1.31685 1.42549 1.72133 1.07317 1.10214 1.18321 0.92857 0.82949 0.91173 1.20414 1.24507 0.95845 0.97804 1.20534 0.95971 0.93107 0.96352 1.21613 1.16544 0.99031 0.95935 1.18376 0.87806 0.87340 0.91728 1.19559 1.39517 0.94214 0.92391 0.89998 1.26159 0.95766 0.95105 1.00161 1.70239 1.24139 1.06617 1.25873 0.86528 0.78923 0.80749 0.81909 1.19814 1.18761 1.20234 1.68629 1.22055 1.06191 1.22308 0.92573 0.92514 0.92463 0.90429 0.91458 0.92554 0.91700 0.91825 0.76766 0.88422 0.88409 0.91066 0.91194 0.78555 0.77311 0.89213 0.88698 0.88633 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.80 37.15 0.36 -0.47 16 2 C -0.13 -0.65 5.47 -26.73 -0.15 -0.80 16 3 C 0.14 1.04 2.57 -67.93 -0.17 0.87 16 4 H 0.09 0.88 7.58 -51.93 -0.39 0.48 16 5 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 6 N -0.73 -5.36 4.53 -53.80 -0.24 -5.60 16 7 C 0.52 5.64 7.79 -10.99 -0.09 5.55 16 8 O -0.53 -8.40 15.64 5.55 0.09 -8.31 16 9 C -0.15 -1.35 5.81 -27.88 -0.16 -1.51 16 10 C 0.16 2.34 4.96 -4.04 -0.02 2.32 16 11 N -0.76 -11.30 5.56 -65.23 -0.36 -11.66 16 12 C 0.66 14.06 8.52 -86.92 -0.74 13.32 16 13 O -0.46 -12.36 12.23 5.31 0.06 -12.29 16 14 N -0.67 -13.63 5.39 -15.79 -0.09 -13.72 16 15 C 0.39 9.74 7.43 -154.99 -1.15 8.59 16 16 C -0.36 -8.26 9.95 -38.89 -0.39 -8.65 16 17 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 18 C -0.31 -7.98 9.83 -38.66 -0.38 -8.36 16 19 C 0.27 7.91 6.53 -85.00 -0.55 7.36 16 20 C -0.43 -12.14 9.13 -37.73 -0.34 -12.49 16 21 H 0.08 2.18 7.85 -52.49 -0.41 1.77 16 22 C 0.06 1.59 5.48 -17.34 -0.09 1.50 16 23 N -0.65 -18.95 9.19 55.55 0.51 -18.44 16 24 Si 0.89 20.17 29.56 -169.99 -5.03 15.14 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 N -0.47 -13.77 5.77 -10.26 -0.06 -13.83 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.31 7.75 -51.92 -0.40 -0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.40 1.74 8.60 -40.82 -0.35 1.38 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.24 8.10 -51.93 -0.42 0.81 16 41 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 42 H 0.38 4.01 8.49 -40.82 -0.35 3.66 16 43 H 0.39 6.00 8.72 -40.82 -0.36 5.65 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 46 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 47 H 0.27 7.59 8.29 -40.82 -0.34 7.25 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -37.64 393.06 -10.43 -48.07 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.31 Total: 9.60 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -3.93 Total: 5.12 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.24 Total: -63.24 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.15 Total: -20.61 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.64 -10.43 -48.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364468941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.456 kcal (2) G-P(sol) polarization free energy of solvation -37.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds