Wall clock time and date at job start Tue Mar 31 2020 17:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47555 * 2 1 4 4 C 1.53004 * 109.46868 * 239.99855 * 2 1 3 5 5 C 1.50700 * 109.47445 * 120.00063 * 2 1 3 6 6 N 1.31802 * 119.03466 * 59.99617 * 5 2 1 7 7 C 1.32266 * 120.88715 * 180.02562 * 6 5 2 8 8 C 1.39228 * 119.01960 * 359.97438 * 7 6 5 9 9 N 1.40002 * 120.86996 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00100 * 34.91791 * 9 8 7 11 11 O 1.21588 * 120.00326 * 355.32426 * 10 9 8 12 12 N 1.34777 * 120.00448 * 175.32998 * 10 9 8 13 13 C 1.47423 * 125.64380 * 359.97154 * 12 10 9 14 14 C 1.54911 * 104.83375 * 155.90887 * 13 12 10 15 15 C 1.55162 * 101.57812 * 37.00949 * 14 13 12 16 16 O 1.42903 * 110.71732 * 83.04001 * 15 14 13 17 17 C 1.50698 * 110.71938 * 206.13269 * 15 14 13 18 18 H 1.07996 * 120.00203 * 357.56261 * 17 15 14 19 19 C 1.37883 * 119.99717 * 177.28568 * 17 15 14 20 20 N 1.31509 * 119.99933 * 0.27388 * 19 17 15 21 21 Si 1.86803 * 119.99710 * 180.27678 * 19 17 15 22 22 H 1.48503 * 109.47091 * 90.00010 * 21 19 17 23 23 H 1.48497 * 109.46607 * 209.99607 * 21 19 17 24 24 H 1.48490 * 109.47173 * 329.99862 * 21 19 17 25 25 C 1.47318 * 125.61985 * 180.20031 * 12 10 9 26 26 C 1.39229 * 118.25844 * 0.25752 * 8 7 6 27 27 N 1.31789 * 119.04026 * 239.97812 * 5 2 1 28 28 H 1.09000 * 109.46538 * 300.00169 * 1 2 3 29 29 H 1.08999 * 109.47091 * 59.99509 * 1 2 3 30 30 H 1.08994 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47586 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46602 * 300.00379 * 3 2 1 33 33 H 1.08998 * 109.47241 * 59.99783 * 3 2 1 34 34 H 1.08994 * 109.47159 * 300.00331 * 4 2 1 35 35 H 1.08999 * 109.46745 * 60.00425 * 4 2 1 36 36 H 1.09001 * 109.46860 * 179.97438 * 4 2 1 37 37 H 1.08002 * 120.49146 * 180.02562 * 7 6 5 38 38 H 0.97002 * 119.99873 * 214.91623 * 9 8 7 39 39 H 1.09001 * 110.36801 * 37.07257 * 13 12 10 40 40 H 1.09004 * 110.37191 * 274.75052 * 13 12 10 41 41 H 1.08991 * 111.00854 * 278.93861 * 14 13 12 42 42 H 1.08998 * 111.00566 * 155.08111 * 14 13 12 43 43 H 0.96701 * 113.99797 * 182.44351 * 16 15 14 44 44 H 0.97004 * 119.99882 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.06029 * 61.67566 * 25 12 10 46 46 H 1.09000 * 109.85026 * 300.41466 * 25 12 10 47 47 H 1.08003 * 120.48645 * 179.72557 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7024 -1.9723 1.4201 7 6 2.1225 -2.6309 2.4874 8 6 2.9241 -1.9719 3.4156 9 7 3.3899 -2.6316 4.5592 10 6 3.7081 -3.9399 4.4998 11 8 3.5108 -4.5678 3.4775 12 7 4.2449 -4.5523 5.5737 13 6 4.5366 -3.9140 6.8702 14 6 4.5310 -5.0760 7.8946 15 6 5.1757 -6.2213 7.0698 16 8 6.6012 -6.1254 7.0999 17 6 4.7229 -7.5654 7.5792 18 1 4.0701 -7.6256 8.4374 19 6 5.1375 -8.7179 6.9460 20 7 5.9324 -8.6445 5.9010 21 14 4.5699 -10.3836 7.5728 22 1 3.3042 -10.7626 6.8948 23 1 5.6108 -11.4023 7.2830 24 1 4.3436 -10.3102 9.0385 25 6 4.6415 -5.9694 5.6441 26 6 3.2453 -0.6378 3.1797 27 7 2.7892 -0.0519 2.0851 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 1.8486 -3.6650 2.6362 38 1 3.4838 -2.1470 5.3942 39 1 3.7633 -3.1867 7.1175 40 1 5.5153 -3.4347 6.8455 41 1 3.5135 -5.3320 8.1895 42 1 5.1389 -4.8319 8.7657 43 1 7.0518 -6.7962 6.5688 44 1 6.2237 -9.4553 5.4553 45 1 5.4235 -6.1755 4.9133 46 1 3.7769 -6.6055 5.4545 47 1 3.8610 -0.0907 3.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365483963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:00 Heat of formation + Delta-G solvation = -30.160336 kcal Electronic energy + Delta-G solvation = -28943.534793 eV Core-core repulsion = 24933.491871 eV Total energy + Delta-G solvation = -4010.042922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45321 -39.94488 -37.84530 -36.78702 -34.77641 -34.44057 -33.73972 -32.28072 -30.66036 -29.38546 -27.90229 -27.49037 -27.41675 -25.42920 -24.55440 -24.00528 -22.73850 -20.28639 -19.92219 -19.72672 -18.41324 -17.37957 -17.16654 -16.85323 -16.61426 -15.62375 -15.27842 -15.03634 -14.70656 -14.50589 -14.35891 -14.06524 -13.84669 -13.56613 -13.45392 -13.06217 -12.99549 -12.51893 -12.37662 -12.36101 -11.84444 -11.79454 -11.77829 -11.62063 -11.24979 -11.16985 -11.10904 -11.04567 -10.92860 -10.80431 -10.80108 -10.76417 -10.56664 -10.26964 -9.92034 -9.44265 -9.20281 -8.75466 -8.51474 -8.42492 -7.98487 -6.36592 -4.45458 0.83787 1.07236 2.63757 3.16907 3.24857 3.27031 3.29863 3.74869 3.78649 4.03977 4.11741 4.21578 4.49482 4.79845 4.82175 4.83717 4.90772 4.93664 5.18215 5.26670 5.47552 5.48938 5.51036 5.62798 5.66451 5.69738 5.71171 5.77251 5.84770 5.86904 5.93440 5.95670 6.13632 6.14650 6.26457 6.36339 6.55241 6.55652 6.72170 6.75221 6.98683 7.02079 7.17152 7.34015 7.65500 7.91792 8.09092 8.14137 8.57548 8.70375 9.21800 9.31297 10.71269 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002378 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.523737 B =11771.550093 C =12363.788282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.004 3.996 3 C -0.127 4.127 4 C -0.136 4.136 5 C 0.295 3.705 6 N -0.493 5.493 7 C 0.150 3.850 8 C 0.072 3.928 9 N -0.680 5.680 10 C 0.713 3.287 11 O -0.579 6.579 12 N -0.620 5.620 13 C 0.099 3.901 14 C -0.115 4.115 15 C 0.249 3.751 16 O -0.585 6.585 17 C -0.539 4.539 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.119 3.881 26 C 0.115 3.885 27 N -0.494 5.494 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.184 0.816 38 H 0.408 0.592 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.385 0.615 44 H 0.272 0.728 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 17.386 -5.954 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 C -0.185 4.185 4 C -0.194 4.194 5 C 0.026 3.974 6 N -0.206 5.206 7 C -0.020 4.020 8 C -0.030 4.030 9 N -0.329 5.329 10 C 0.416 3.584 11 O -0.456 6.456 12 N -0.356 5.356 13 C -0.024 4.024 14 C -0.153 4.153 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.577 4.577 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.002 4.002 26 C -0.054 4.054 27 N -0.207 5.207 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.201 0.799 38 H 0.245 0.755 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.236 0.764 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.400 17.711 -7.239 20.514 hybrid contribution 0.396 -1.706 1.236 2.144 sum -7.004 16.005 -6.003 18.473 Atomic orbital electron populations 1.21832 0.92772 1.02930 1.01775 1.19302 0.96073 0.94880 0.89529 1.21700 1.01708 0.93520 1.01524 1.21846 1.01036 1.01103 0.95460 1.22951 0.91899 0.87451 0.95066 1.68217 1.22916 1.08923 1.20537 1.23676 0.89160 1.01065 0.88049 1.19378 0.97739 0.94501 0.91366 1.42562 1.68965 1.10193 1.11216 1.15508 0.78859 0.80452 0.83630 1.90903 1.60553 1.64112 1.30061 1.48106 1.62895 1.13575 1.11050 1.22351 0.99598 0.96553 0.83942 1.22734 1.01225 0.94247 0.97138 1.19496 0.79461 0.92329 0.87920 1.86092 1.19808 1.58992 1.74575 1.21487 1.31166 0.90039 1.15017 0.91428 1.25083 0.94082 0.99963 0.94142 1.69632 1.33787 1.29855 1.20013 0.86381 0.78535 0.82588 0.79314 1.20367 1.20935 1.19661 1.23104 0.99993 0.75671 1.01450 1.23038 0.96521 0.91293 0.94571 1.68157 1.11048 1.38813 1.02674 0.92865 0.91786 0.91409 0.92049 0.92556 0.92080 0.91369 0.91783 0.92783 0.79917 0.75536 0.92390 0.91487 0.90348 0.90297 0.76372 0.91842 0.91503 0.91308 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.37 37.16 0.31 -0.93 16 2 C 0.00 0.04 0.92 -155.66 -0.14 -0.10 16 3 C -0.13 -1.14 7.66 37.16 0.28 -0.86 16 4 C -0.14 -1.34 8.37 37.16 0.31 -1.03 16 5 C 0.29 3.92 6.25 -157.19 -0.98 2.93 16 6 N -0.49 -7.31 9.79 -10.58 -0.10 -7.41 16 7 C 0.15 2.32 9.98 -17.00 -0.17 2.15 16 8 C 0.07 0.99 6.35 -83.39 -0.53 0.46 16 9 N -0.68 -9.30 5.32 -14.03 -0.07 -9.37 16 10 C 0.71 13.11 8.35 -86.92 -0.73 12.38 16 11 O -0.58 -12.67 14.17 5.29 0.07 -12.59 16 12 N -0.62 -11.69 3.33 -176.00 -0.59 -12.28 16 13 C 0.10 1.52 6.61 -2.53 -0.02 1.51 16 14 C -0.12 -2.10 6.23 -24.58 -0.15 -2.25 16 15 C 0.25 5.66 0.85 -89.94 -0.08 5.59 16 16 O -0.59 -14.03 13.08 -35.23 -0.46 -14.49 16 17 C -0.54 -13.46 8.11 -34.44 -0.28 -13.74 16 18 H 0.07 1.66 7.77 -52.49 -0.41 1.25 16 19 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 20 N -0.89 -23.08 10.96 55.43 0.61 -22.48 16 21 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 C 0.12 2.72 5.39 -2.90 -0.02 2.71 16 26 C 0.12 1.37 11.26 -17.00 -0.19 1.18 16 27 N -0.49 -6.38 9.00 -10.58 -0.10 -6.47 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.68 8.01 -51.93 -0.42 0.27 16 31 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 34 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.18 3.10 6.32 -52.49 -0.33 2.77 16 38 H 0.41 4.23 7.28 -40.82 -0.30 3.94 16 39 H 0.06 0.67 7.23 -51.93 -0.38 0.30 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.39 9.57 7.24 45.56 0.33 9.90 16 44 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.07 1.69 8.00 -51.93 -0.42 1.27 16 46 H 0.07 1.72 7.81 -51.93 -0.41 1.31 16 47 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -29.13 381.62 -8.88 -38.01 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -6.50 Total: 14.75 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -2.47 Total: 11.69 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.25 Total: -58.00 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.39 Total: -27.08 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.13 -8.88 -38.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365483963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.854 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds