Wall clock time and date at job start Tue Mar 31 2020 17:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47555 * 2 1 4 4 C 1.53004 * 109.46868 * 239.99855 * 2 1 3 5 5 C 1.50700 * 109.47445 * 120.00063 * 2 1 3 6 6 N 1.31802 * 119.03466 * 59.99617 * 5 2 1 7 7 C 1.32266 * 120.88715 * 180.02562 * 6 5 2 8 8 C 1.39228 * 119.01960 * 359.97438 * 7 6 5 9 9 N 1.40002 * 120.86996 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00100 * 34.91791 * 9 8 7 11 11 O 1.21588 * 120.00326 * 355.32426 * 10 9 8 12 12 N 1.34777 * 120.00448 * 175.32998 * 10 9 8 13 13 C 1.47423 * 125.64380 * 359.97154 * 12 10 9 14 14 C 1.54911 * 104.83375 * 155.90887 * 13 12 10 15 15 C 1.55162 * 101.57812 * 37.00949 * 14 13 12 16 16 O 1.42903 * 110.71732 * 83.04001 * 15 14 13 17 17 C 1.50698 * 110.71938 * 206.13269 * 15 14 13 18 18 H 1.07996 * 120.00203 * 357.56261 * 17 15 14 19 19 C 1.37883 * 119.99717 * 177.28568 * 17 15 14 20 20 N 1.31509 * 119.99933 * 0.27388 * 19 17 15 21 21 Si 1.86803 * 119.99710 * 180.27678 * 19 17 15 22 22 H 1.48503 * 109.47091 * 90.00010 * 21 19 17 23 23 H 1.48497 * 109.46607 * 209.99607 * 21 19 17 24 24 H 1.48490 * 109.47173 * 329.99862 * 21 19 17 25 25 C 1.47318 * 125.61985 * 180.20031 * 12 10 9 26 26 C 1.39229 * 118.25844 * 0.25752 * 8 7 6 27 27 N 1.31789 * 119.04026 * 239.97812 * 5 2 1 28 28 H 1.09000 * 109.46538 * 300.00169 * 1 2 3 29 29 H 1.08999 * 109.47091 * 59.99509 * 1 2 3 30 30 H 1.08994 * 109.47501 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47586 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46602 * 300.00379 * 3 2 1 33 33 H 1.08998 * 109.47241 * 59.99783 * 3 2 1 34 34 H 1.08994 * 109.47159 * 300.00331 * 4 2 1 35 35 H 1.08999 * 109.46745 * 60.00425 * 4 2 1 36 36 H 1.09001 * 109.46860 * 179.97438 * 4 2 1 37 37 H 1.08002 * 120.49146 * 180.02562 * 7 6 5 38 38 H 0.97002 * 119.99873 * 214.91623 * 9 8 7 39 39 H 1.09001 * 110.36801 * 37.07257 * 13 12 10 40 40 H 1.09004 * 110.37191 * 274.75052 * 13 12 10 41 41 H 1.08991 * 111.00854 * 278.93861 * 14 13 12 42 42 H 1.08998 * 111.00566 * 155.08111 * 14 13 12 43 43 H 0.96701 * 113.99797 * 182.44351 * 16 15 14 44 44 H 0.97004 * 119.99882 * 180.02562 * 20 19 17 45 45 H 1.08999 * 110.06029 * 61.67566 * 25 12 10 46 46 H 1.09000 * 109.85026 * 300.41466 * 25 12 10 47 47 H 1.08003 * 120.48645 * 179.72557 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7024 -1.9723 1.4201 7 6 2.1225 -2.6309 2.4874 8 6 2.9241 -1.9719 3.4156 9 7 3.3899 -2.6316 4.5592 10 6 3.7081 -3.9399 4.4998 11 8 3.5108 -4.5678 3.4775 12 7 4.2449 -4.5523 5.5737 13 6 4.5366 -3.9140 6.8702 14 6 4.5310 -5.0760 7.8946 15 6 5.1757 -6.2213 7.0698 16 8 6.6012 -6.1254 7.0999 17 6 4.7229 -7.5654 7.5792 18 1 4.0701 -7.6256 8.4374 19 6 5.1375 -8.7179 6.9460 20 7 5.9324 -8.6445 5.9010 21 14 4.5699 -10.3836 7.5728 22 1 3.3042 -10.7626 6.8948 23 1 5.6108 -11.4023 7.2830 24 1 4.3436 -10.3102 9.0385 25 6 4.6415 -5.9694 5.6441 26 6 3.2453 -0.6378 3.1797 27 7 2.7892 -0.0519 2.0851 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6765 -1.7489 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7209 -1.2495 37 1 1.8486 -3.6650 2.6362 38 1 3.4838 -2.1470 5.3942 39 1 3.7633 -3.1867 7.1175 40 1 5.5153 -3.4347 6.8455 41 1 3.5135 -5.3320 8.1895 42 1 5.1389 -4.8319 8.7657 43 1 7.0518 -6.7962 6.5688 44 1 6.2237 -9.4553 5.4553 45 1 5.4235 -6.1755 4.9133 46 1 3.7769 -6.6055 5.4545 47 1 3.8610 -0.0907 3.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365483963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:59 Heat of formation + Delta-G solvation = -50.276477 kcal Electronic energy + Delta-G solvation = -28944.407094 eV Core-core repulsion = 24933.491871 eV Total energy + Delta-G solvation = -4010.915224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55894 -41.32590 -39.37621 -37.78642 -36.22498 -35.92202 -34.80891 -34.21409 -32.11296 -30.63921 -29.54967 -28.23437 -28.16869 -27.13168 -25.65680 -25.22964 -24.13664 -21.57093 -21.37491 -20.93405 -19.74657 -19.09199 -18.48064 -18.11360 -17.59289 -17.17244 -16.92997 -16.24032 -16.15689 -16.02815 -15.43947 -15.03092 -14.91450 -14.78660 -14.76933 -14.61707 -14.51770 -14.00693 -13.51740 -13.36519 -13.14959 -13.13552 -12.87401 -12.69798 -12.57466 -12.54865 -12.34981 -12.30850 -12.25076 -12.12473 -12.02405 -11.90209 -11.82273 -11.75192 -11.40175 -11.20014 -10.66781 -10.34094 -10.25634 -9.85178 -9.34114 -8.28466 -6.43659 -0.23307 -0.00086 1.29371 1.41009 1.43466 1.52243 1.88765 2.36309 2.68581 2.74184 2.88811 2.98864 3.12004 3.45730 3.76667 3.80973 3.93964 4.05036 4.05371 4.06616 4.14332 4.33072 4.39681 4.57529 4.67916 4.70389 4.78794 4.81402 4.85510 4.90126 5.00960 5.01428 5.04917 5.10238 5.14678 5.16233 5.25787 5.34528 5.38682 5.46236 5.46591 5.53580 5.73582 5.84867 5.94449 6.05566 6.62511 6.79451 7.03819 7.27107 7.28073 7.34988 8.77506 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.002378 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.523737 B =11771.550093 C =12363.788282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.001 4.001 3 C -0.120 4.120 4 C -0.133 4.133 5 C 0.289 3.711 6 N -0.511 5.511 7 C 0.130 3.870 8 C 0.059 3.941 9 N -0.655 5.655 10 C 0.712 3.288 11 O -0.622 6.622 12 N -0.624 5.624 13 C 0.102 3.898 14 C -0.111 4.111 15 C 0.232 3.768 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.026 3.974 20 N -0.916 5.916 21 Si 0.961 3.039 22 H -0.280 1.280 23 H -0.283 1.283 24 H -0.264 1.264 25 C 0.138 3.862 26 C 0.135 3.865 27 N -0.497 5.497 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.159 0.841 38 H 0.428 0.572 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.377 0.623 44 H 0.270 0.730 45 H 0.030 0.970 46 H 0.035 0.965 47 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 20.376 -5.157 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.003 4.003 3 C -0.177 4.177 4 C -0.191 4.191 5 C 0.022 3.978 6 N -0.224 5.224 7 C -0.038 4.038 8 C -0.042 4.042 9 N -0.306 5.306 10 C 0.414 3.586 11 O -0.503 6.503 12 N -0.360 5.360 13 C -0.019 4.019 14 C -0.148 4.148 15 C 0.192 3.808 16 O -0.396 6.396 17 C -0.594 4.594 18 H 0.087 0.913 19 C -0.175 4.175 20 N -0.556 5.556 21 Si 0.787 3.213 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.188 1.188 25 C 0.015 3.985 26 C -0.034 4.034 27 N -0.210 5.210 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.176 0.824 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.227 0.773 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.992 20.763 -6.404 23.151 hybrid contribution 0.552 -2.579 0.923 2.794 sum -7.440 18.184 -5.481 20.397 Atomic orbital electron populations 1.21802 0.91759 1.02305 1.02948 1.19531 0.96894 0.95554 0.88369 1.21655 1.01105 0.92384 1.02595 1.21828 1.00393 1.00461 0.96431 1.23621 0.91281 0.87024 0.95911 1.68213 1.23715 1.09885 1.20613 1.23438 0.90509 1.00562 0.89324 1.19408 0.98248 0.95293 0.91267 1.42113 1.67929 1.08329 1.12190 1.15633 0.78507 0.81676 0.82762 1.90885 1.62036 1.65586 1.31747 1.47967 1.63096 1.12265 1.12643 1.22549 1.02101 0.96186 0.81066 1.22731 1.01212 0.93240 0.97661 1.19724 0.78915 0.93573 0.88590 1.86081 1.20572 1.58583 1.74347 1.21851 1.31087 0.91422 1.15007 0.91311 1.25800 0.94317 1.03047 0.94364 1.69741 1.34661 1.30309 1.20844 0.85502 0.77793 0.79010 0.79038 1.20604 1.20865 1.18843 1.22539 0.97358 0.77888 1.00751 1.23667 0.95149 0.90214 0.94415 1.68306 1.11123 1.38575 1.02973 0.93005 0.89273 0.92942 0.92886 0.90200 0.92301 0.93088 0.89105 0.93724 0.82378 0.73143 0.87289 0.90388 0.89641 0.88924 0.77348 0.92065 0.95110 0.94634 0.77363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.37 71.98 0.60 -1.57 16 2 C 0.00 -0.03 0.92 -52.93 -0.05 -0.08 16 3 C -0.12 -1.85 7.66 71.98 0.55 -1.30 16 4 C -0.13 -2.47 8.37 71.98 0.60 -1.87 16 5 C 0.29 7.43 6.25 138.75 0.87 8.29 16 6 N -0.51 -15.38 9.79 -187.39 -1.83 -17.21 16 7 C 0.13 4.13 9.98 84.87 0.85 4.98 16 8 C 0.06 1.55 6.35 38.31 0.24 1.79 16 9 N -0.65 -16.66 5.32 -316.58 -1.68 -18.34 16 10 C 0.71 26.09 8.35 179.06 1.50 27.59 16 11 O -0.62 -28.41 14.17 -3.99 -0.06 -28.47 16 12 N -0.62 -23.25 3.33 -829.00 -2.76 -26.02 16 13 C 0.10 2.87 6.61 86.86 0.57 3.44 16 14 C -0.11 -3.80 6.23 31.99 0.20 -3.60 16 15 C 0.23 10.67 0.85 -10.35 -0.01 10.66 16 16 O -0.59 -28.50 13.08 -148.98 -1.95 -30.45 16 17 C -0.56 -28.08 8.11 25.60 0.21 -27.87 16 18 H 0.07 3.37 7.77 -2.91 -0.02 3.35 16 19 C 0.03 1.31 5.27 84.66 0.45 1.76 16 20 N -0.92 -48.98 10.96 21.45 0.24 -48.75 16 21 Si 0.96 41.34 29.54 68.60 2.03 43.37 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 C 0.14 6.54 5.39 86.67 0.47 7.01 16 26 C 0.14 2.84 11.26 84.87 0.96 3.79 16 27 N -0.50 -11.77 9.00 -187.39 -1.69 -13.46 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.04 8.01 -2.39 -0.02 1.02 16 31 H 0.05 0.91 8.04 -2.39 -0.02 0.89 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.94 8.04 -2.39 -0.02 0.92 16 34 H 0.05 1.11 8.01 -2.39 -0.02 1.09 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.16 5.77 6.32 -2.91 -0.02 5.75 16 38 H 0.43 7.24 7.28 -92.71 -0.67 6.57 16 39 H 0.11 1.99 7.23 -2.39 -0.02 1.97 16 40 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 42 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.38 19.40 7.24 -74.06 -0.54 18.86 16 44 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 45 H 0.03 1.64 8.00 -2.39 -0.02 1.62 16 46 H 0.04 1.87 7.81 -2.39 -0.02 1.85 16 47 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -67.28 381.62 0.08 -67.20 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.21 Total: 39.10 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 8.00 Total: 33.03 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -7.73 Total: -123.78 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -2.00 Total: -58.91 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -67.28 0.08 -67.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365483963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.921 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds