Wall clock time and date at job start Tue Mar 31 2020 19:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08999 * 109.47059 * 55.00112 * 3 2 1 5 5 C 1.52996 * 109.46998 * 175.00065 * 3 2 1 6 6 N 1.46498 * 109.47486 * 295.00202 * 3 2 1 7 7 C 1.34777 * 120.00218 * 154.99439 * 6 3 2 8 8 O 1.21287 * 119.99722 * 0.02562 * 7 6 3 9 9 C 1.50698 * 120.00288 * 180.02562 * 7 6 3 10 10 H 1.08998 * 109.47173 * 60.00038 * 9 7 6 11 11 C 1.53005 * 109.47000 * 300.00604 * 9 7 6 12 12 N 1.46499 * 109.47272 * 180.02562 * 9 7 6 13 13 C 1.34775 * 119.99934 * 204.99797 * 12 9 7 14 14 O 1.21582 * 119.99786 * 0.02562 * 13 12 9 15 15 N 1.34769 * 119.99995 * 179.97438 * 13 12 9 16 16 C 1.39244 * 120.00084 * 185.14828 * 15 13 12 17 17 C 1.39687 * 119.57945 * 174.62289 * 16 15 13 18 18 C 1.38641 * 119.50021 * 180.02562 * 17 16 15 19 19 C 1.38356 * 118.66970 * 359.97438 * 18 17 16 20 20 C 1.40570 * 119.13166 * 0.02562 * 19 18 17 21 21 C 1.41331 * 119.78983 * 179.97438 * 20 19 18 22 22 H 1.08007 * 119.99562 * 0.02562 * 21 20 19 23 23 C 1.40019 * 120.00182 * 179.97438 * 21 20 19 24 24 N 1.30743 * 120.00044 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00035 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46910 * 90.00063 * 25 23 21 27 27 H 1.48497 * 109.47213 * 210.00206 * 25 23 21 28 28 H 1.48498 * 109.46761 * 330.00261 * 25 23 21 29 29 N 1.31905 * 119.57569 * 354.35859 * 16 15 13 30 30 H 1.08998 * 109.47459 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47243 * 300.00018 * 1 2 3 32 32 H 1.09000 * 109.47305 * 59.99851 * 1 2 3 33 33 H 1.09005 * 109.46888 * 240.00393 * 2 1 3 34 34 H 1.09000 * 109.47305 * 120.00148 * 2 1 3 35 35 H 1.09001 * 109.46947 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47591 * 300.00127 * 5 3 2 37 37 H 1.09006 * 109.47423 * 60.00429 * 5 3 2 38 38 H 0.96998 * 119.99982 * 335.00382 * 6 3 2 39 39 H 1.09004 * 109.47103 * 299.99539 * 11 9 7 40 40 H 1.08996 * 109.47095 * 59.99653 * 11 9 7 41 41 H 1.09002 * 109.47281 * 179.97438 * 11 9 7 42 42 H 0.96996 * 119.99533 * 25.00217 * 12 9 7 43 43 H 0.97003 * 120.00376 * 5.15637 * 15 13 12 44 44 H 1.08003 * 120.24563 * 359.97438 * 17 16 15 45 45 H 1.08001 * 120.66876 * 180.02562 * 18 17 16 46 46 H 1.07999 * 120.43112 * 179.97438 * 19 18 17 47 47 H 0.97008 * 119.99982 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0976 -1.2517 7 6 1.5255 3.4385 -1.2994 8 8 1.7326 4.1029 -0.3061 9 6 1.1263 4.1123 -2.5869 10 1 0.1500 3.7441 -2.9022 11 6 2.1626 3.8003 -3.6685 12 7 1.0586 5.5610 -2.3794 13 6 0.2724 6.3189 -3.1693 14 8 -0.3810 5.8002 -4.0537 15 7 0.2097 7.6514 -2.9780 16 6 -0.6818 8.4203 -3.7216 17 6 -0.8208 9.7812 -3.4389 18 6 -1.7094 10.5451 -4.1799 19 6 -2.4357 9.9306 -5.1845 20 6 -2.2509 8.5572 -5.4204 21 6 -2.9861 7.9153 -6.4426 22 1 -3.6868 8.4799 -7.0398 23 6 -2.8051 6.5476 -6.6818 24 7 -1.9558 5.8644 -5.9598 25 14 -3.7773 5.6989 -8.0325 26 1 -3.0186 5.7688 -9.3071 27 1 -3.9979 4.2771 -7.6650 28 1 -5.0883 6.3763 -8.1990 29 7 -1.3804 7.8554 -4.6874 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.9281 2.4720 0.1262 36 1 3.8532 0.9570 1.0570 37 1 3.9994 0.9053 -0.7162 38 1 1.4870 1.5662 -2.0462 39 1 3.1389 4.1686 -3.3533 40 1 2.2133 2.7226 -3.8229 41 1 1.8736 4.2873 -4.5999 42 1 1.5797 5.9746 -1.6735 43 1 0.7857 8.0750 -2.3225 44 1 -0.2411 10.2347 -2.6485 45 1 -1.8315 11.5990 -3.9777 46 1 -3.1360 10.4985 -5.7789 47 1 -1.8307 4.9168 -6.1253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365523410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:04 Heat of formation + Delta-G solvation = -14.524386 kcal Electronic energy + Delta-G solvation = -29055.106941 eV Core-core repulsion = 25045.742045 eV Total energy + Delta-G solvation = -4009.364897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.36136 -39.24617 -37.71007 -36.68697 -34.73544 -33.83222 -32.95183 -32.64010 -30.62512 -30.21467 -29.70398 -28.50342 -25.50311 -24.81176 -23.89280 -22.20504 -21.32439 -20.99797 -20.36125 -19.71967 -18.29279 -17.57773 -16.78859 -16.33839 -16.01304 -15.36246 -15.13961 -14.62033 -14.44718 -14.35211 -14.08070 -14.03682 -13.87444 -13.67638 -13.53238 -13.03902 -12.84999 -12.73730 -12.47359 -12.30113 -12.10323 -11.98249 -11.86202 -11.65207 -11.47817 -11.41052 -11.12521 -11.02914 -10.91331 -10.60003 -10.42098 -9.89400 -9.83944 -9.65870 -9.29875 -9.10094 -8.98470 -8.50741 -7.90185 -7.16917 -6.88890 -6.06801 -4.34182 2.52043 2.78341 2.88419 3.16843 3.19143 3.22030 3.31331 3.42795 4.10038 4.23134 4.34196 4.59482 4.68442 4.73653 4.82404 4.98999 5.09789 5.19694 5.24222 5.28211 5.29673 5.43055 5.56670 5.61296 5.61702 5.78057 5.87531 5.89482 5.97150 6.10211 6.15053 6.26741 6.29766 6.53566 6.66876 6.83561 6.89464 6.92137 7.27626 7.33100 7.42178 7.67291 7.79965 7.87020 8.05840 8.22336 8.34927 8.70930 8.85025 9.11214 9.61979 10.31838 10.54088 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003083 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.018516 B = 9079.884608 C =10620.030450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.140 3.860 4 H 0.088 0.912 5 C -0.163 4.163 6 N -0.723 5.723 7 C 0.515 3.485 8 O -0.537 6.537 9 C 0.152 3.848 10 H 0.114 0.886 11 C -0.157 4.157 12 N -0.744 5.744 13 C 0.668 3.332 14 O -0.464 6.464 15 N -0.671 5.671 16 C 0.388 3.612 17 C -0.357 4.357 18 C -0.036 4.036 19 C -0.307 4.307 20 C 0.271 3.729 21 C -0.426 4.426 22 H 0.081 0.919 23 C 0.057 3.943 24 N -0.649 5.649 25 Si 0.894 3.106 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.264 1.264 29 N -0.471 5.471 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.401 0.599 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.394 0.606 43 H 0.396 0.604 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -12.910 9.474 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.169 4.169 3 C 0.035 3.965 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.376 5.376 7 C 0.301 3.699 8 O -0.413 6.413 9 C 0.042 3.958 10 H 0.131 0.869 11 C -0.216 4.216 12 N -0.405 5.405 13 C 0.367 3.633 14 O -0.328 6.328 15 N -0.319 5.319 16 C 0.148 3.852 17 C -0.383 4.383 18 C -0.060 4.060 19 C -0.330 4.330 20 C 0.146 3.854 21 C -0.457 4.457 22 H 0.099 0.901 23 C -0.172 4.172 24 N -0.267 5.267 25 Si 0.718 3.282 26 H -0.197 1.197 27 H -0.204 1.204 28 H -0.188 1.188 29 N -0.189 5.189 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.236 0.764 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.228 0.772 43 H 0.229 0.771 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.616 -14.100 9.190 19.384 hybrid contribution 0.036 0.691 0.012 0.692 sum 9.652 -13.409 9.202 18.912 Atomic orbital electron populations 1.21792 0.95140 1.01781 1.02552 1.21837 0.96720 0.95298 1.03002 1.21009 0.94882 0.93051 0.87536 0.89392 1.22180 0.95382 1.02714 1.01903 1.46030 1.70996 1.06836 1.13722 1.20881 0.76145 0.82393 0.90452 1.90676 1.49970 1.64065 1.36630 1.20372 1.01881 0.82024 0.91543 0.86852 1.22154 0.98296 1.01466 0.99714 1.44999 1.51373 1.05412 1.38731 1.16340 0.81681 0.81907 0.83411 1.91380 1.41828 1.70182 1.29431 1.42505 1.41510 1.05857 1.42044 1.18334 0.89658 0.86431 0.90786 1.20451 1.13320 0.93796 1.10724 1.20544 0.94245 0.96992 0.94238 1.21618 1.08896 0.97070 1.05435 1.18392 0.88684 0.87700 0.90603 1.19554 1.19260 0.93577 1.13280 0.90057 1.26180 0.95787 0.98230 0.96992 1.70367 1.21000 1.07576 1.27791 0.86559 0.80932 0.78937 0.81760 1.19735 1.20408 1.18836 1.68689 1.09477 1.34810 1.05969 0.92520 0.92542 0.92299 0.91337 0.90458 0.91975 0.91748 0.92439 0.76374 0.92402 0.91888 0.90053 0.77155 0.77080 0.89126 0.88642 0.88625 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.80 37.16 0.36 -0.72 16 2 C -0.13 -0.78 5.47 -26.73 -0.15 -0.93 16 3 C 0.14 1.14 2.57 -67.93 -0.17 0.97 16 4 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 5 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 6 N -0.72 -6.51 4.42 -53.81 -0.24 -6.74 16 7 C 0.52 6.45 7.19 -10.99 -0.08 6.37 16 8 O -0.54 -8.35 15.50 5.55 0.09 -8.26 16 9 C 0.15 2.08 2.99 -69.08 -0.21 1.88 16 10 H 0.11 1.71 7.58 -51.93 -0.39 1.32 16 11 C -0.16 -1.86 9.38 37.16 0.35 -1.51 16 12 N -0.74 -11.97 4.96 -59.82 -0.30 -12.27 16 13 C 0.67 13.97 8.49 -86.93 -0.74 13.23 16 14 O -0.46 -11.61 11.77 5.29 0.06 -11.55 16 15 N -0.67 -13.85 5.39 -15.79 -0.09 -13.93 16 16 C 0.39 9.70 7.43 -155.00 -1.15 8.55 16 17 C -0.36 -8.23 9.95 -38.89 -0.39 -8.62 16 18 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 19 C -0.31 -7.86 9.83 -38.66 -0.38 -8.24 16 20 C 0.27 7.73 6.55 -85.00 -0.56 7.17 16 21 C -0.43 -11.82 9.14 -37.74 -0.34 -12.17 16 22 H 0.08 2.12 7.85 -52.48 -0.41 1.70 16 23 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 24 N -0.65 -17.88 8.98 55.55 0.50 -17.39 16 25 Si 0.89 19.23 29.56 -169.99 -5.02 14.20 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 29 N -0.47 -13.40 5.74 -10.26 -0.06 -13.46 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 7.75 -51.93 -0.40 0.05 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.40 2.76 8.02 -40.82 -0.33 2.43 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.39 5.78 7.81 -40.82 -0.32 5.46 16 43 H 0.40 6.52 8.72 -40.82 -0.36 6.16 16 44 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 45 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 47 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -34.31 390.16 -9.97 -44.29 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -7.20 Total: 13.95 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -3.59 Total: 5.29 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.18 Total: -63.79 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.15 Total: -19.81 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.31 -9.97 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365523410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.763 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds