Wall clock time and date at job start Tue Mar 31 2020 19:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46993 * 2 1 4 4 H 1.09001 * 109.47440 * 304.99632 * 3 2 1 5 5 C 1.53010 * 109.47067 * 184.99934 * 3 2 1 6 6 N 1.46500 * 109.47471 * 65.00144 * 3 2 1 7 7 C 1.34771 * 120.00240 * 205.00017 * 6 3 2 8 8 O 1.21279 * 120.00232 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99954 * 179.97438 * 7 6 3 10 10 C 1.53003 * 109.46845 * 180.02562 * 9 7 6 11 11 N 1.46501 * 109.46703 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99925 * 179.97438 * 11 10 9 13 13 O 1.21577 * 119.99799 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00112 * 179.97438 * 12 11 10 15 15 C 1.39454 * 120.00224 * 184.82373 * 14 12 11 16 16 C 1.38644 * 119.64992 * 185.83266 * 15 14 12 17 17 C 1.40826 * 118.67290 * 179.72967 * 16 15 14 18 18 C 1.41542 * 120.99716 * 180.25442 * 17 16 15 19 19 H 1.08004 * 119.99848 * 146.64534 * 18 17 16 20 20 C 1.40029 * 119.99933 * 326.65259 * 18 17 16 21 21 N 1.30748 * 120.00210 * 168.30852 * 20 18 17 22 22 Si 1.86803 * 120.00247 * 348.30795 * 20 18 17 23 23 H 1.48500 * 109.46824 * 92.68469 * 22 20 18 24 24 H 1.48493 * 109.47301 * 212.69007 * 22 20 18 25 25 H 1.48502 * 109.46910 * 332.69018 * 22 20 18 26 26 C 1.41161 * 118.00609 * 0.27160 * 17 16 15 27 27 C 1.36598 * 119.12605 * 0.02562 * 26 17 16 28 28 N 1.32065 * 121.25890 * 0.02562 * 27 26 17 29 29 H 1.08992 * 109.47076 * 300.00016 * 1 2 3 30 30 H 1.09002 * 109.46487 * 59.99986 * 1 2 3 31 31 H 1.08993 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46949 * 240.00049 * 2 1 3 33 33 H 1.08997 * 109.46638 * 120.00458 * 2 1 3 34 34 H 1.08991 * 109.46704 * 60.00077 * 5 3 2 35 35 H 1.08993 * 109.46988 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46744 * 300.00124 * 5 3 2 37 37 H 0.97003 * 120.00075 * 24.99266 * 6 3 2 38 38 H 1.08998 * 109.47335 * 59.99666 * 9 7 6 39 39 H 1.09002 * 109.46870 * 299.99694 * 9 7 6 40 40 H 1.08998 * 109.47448 * 59.99709 * 10 9 7 41 41 H 1.09002 * 109.47115 * 299.99518 * 10 9 7 42 42 H 0.97001 * 120.00447 * 0.02562 * 11 10 9 43 43 H 0.97005 * 119.99704 * 4.83053 * 14 12 11 44 44 H 1.07996 * 120.66466 * 0.02562 * 16 15 14 45 45 H 0.96995 * 119.99798 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.43763 * 179.97438 * 26 17 16 47 47 H 1.08000 * 119.36777 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5257 3.4383 1.2996 8 8 1.7328 4.1028 0.3064 9 6 1.1265 4.1121 2.5872 10 6 1.0546 5.6249 2.3702 11 7 0.6660 6.2798 3.6217 12 6 0.5390 7.6208 3.6695 13 8 0.7466 8.2868 2.6738 14 7 0.1810 8.2232 4.8207 15 6 -0.0484 9.5985 4.8460 16 6 -0.2971 10.2302 6.0549 17 6 -0.5203 11.6207 6.0573 18 6 -0.7734 12.3162 7.2637 19 1 -0.4261 13.3317 7.3847 20 6 -1.4741 11.6877 8.3005 21 7 -1.5122 12.2328 9.4883 22 14 -2.3545 10.0703 7.9865 23 1 -1.4508 8.9413 8.3238 24 1 -3.5735 9.9981 8.8314 25 1 -2.7390 9.9859 6.5546 26 6 -0.4843 12.3000 4.8204 27 6 -0.2375 11.5908 3.6793 28 7 -0.0335 10.2864 3.7138 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8532 0.9570 -1.0570 35 1 3.9283 2.4719 -0.1253 36 1 3.9995 0.9052 0.7161 37 1 1.4871 1.5661 2.0463 38 1 1.8647 3.8898 3.3577 39 1 0.1502 3.7438 2.9024 40 1 0.3162 5.8469 1.5998 41 1 2.0307 5.9935 2.0547 42 1 0.5007 5.7484 4.4162 43 1 0.0829 7.7001 5.6317 44 1 -0.3146 9.6680 6.9768 45 1 -1.9979 11.7975 10.2062 46 1 -0.6505 13.3662 4.7767 47 1 -0.2094 12.1064 2.7308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366308143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:56 Heat of formation + Delta-G solvation = -40.270874 kcal Electronic energy + Delta-G solvation = -27488.360883 eV Core-core repulsion = 23477.879535 eV Total energy + Delta-G solvation = -4010.481348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.36492 -39.88737 -38.31211 -36.97498 -35.15066 -34.24793 -33.75263 -32.87790 -31.32066 -31.07551 -30.01681 -28.62367 -25.99471 -24.81549 -23.86014 -22.32933 -21.74988 -21.30563 -20.82690 -20.10742 -18.38981 -17.77121 -17.34388 -16.67743 -16.27339 -16.17230 -15.53281 -15.12765 -14.78013 -14.65887 -14.51896 -14.39540 -14.17952 -13.94331 -13.77411 -13.65860 -13.55067 -13.04628 -12.94398 -12.78250 -12.60186 -12.27558 -12.06160 -11.84927 -11.71305 -11.60059 -11.54573 -11.19323 -10.98895 -10.82152 -10.65740 -10.19137 -10.06049 -9.88278 -9.69150 -9.49079 -9.36727 -8.91706 -8.17292 -7.88612 -7.23704 -7.00804 -4.71449 2.31735 2.41307 2.55593 2.64475 3.00422 3.06634 3.12939 3.24864 3.72830 3.90070 4.15888 4.29704 4.47011 4.49188 4.55542 4.62040 4.68769 4.75338 4.94563 5.05941 5.10800 5.12356 5.28204 5.40264 5.41003 5.44071 5.61958 5.67975 5.71317 5.75702 5.81721 5.92444 6.11896 6.26321 6.36528 6.42890 6.55658 6.57777 6.95184 7.04572 7.09557 7.20673 7.30800 7.67484 7.88276 7.95782 8.20427 8.24707 8.46049 8.68041 9.01006 9.49113 10.01093 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.001923 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.234601 B =14555.666401 C =15326.468397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.139 3.861 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.728 5.728 7 C 0.519 3.481 8 O -0.530 6.530 9 C -0.153 4.153 10 C 0.157 3.843 11 N -0.756 5.756 12 C 0.693 3.307 13 O -0.525 6.525 14 N -0.673 5.673 15 C 0.386 3.614 16 C -0.318 4.318 17 C 0.131 3.869 18 C -0.442 4.442 19 H 0.096 0.904 20 C 0.085 3.915 21 N -0.808 5.808 22 Si 0.916 3.084 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.245 1.245 26 C -0.269 4.269 27 C 0.129 3.871 28 N -0.551 5.551 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.399 0.601 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.391 0.609 43 H 0.403 0.597 44 H 0.108 0.892 45 H 0.286 0.714 46 H 0.111 0.889 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 -26.716 -9.553 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.034 3.966 4 H 0.107 0.893 5 C -0.223 4.223 6 N -0.381 5.381 7 C 0.304 3.696 8 O -0.405 6.405 9 C -0.194 4.194 10 C 0.032 3.968 11 N -0.414 5.414 12 C 0.392 3.608 13 O -0.395 6.395 14 N -0.321 5.321 15 C 0.157 3.843 16 C -0.344 4.344 17 C 0.122 3.878 18 C -0.472 4.472 19 H 0.114 0.886 20 C -0.135 4.135 21 N -0.433 5.433 22 Si 0.743 3.257 23 H -0.198 1.198 24 H -0.219 1.219 25 H -0.168 1.168 26 C -0.292 4.292 27 C -0.022 4.022 28 N -0.270 5.270 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.224 0.776 43 H 0.238 0.762 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.129 0.871 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.393 -26.020 -11.830 28.919 hybrid contribution -0.747 -1.127 2.252 2.627 sum 3.646 -27.146 -9.578 29.017 Atomic orbital electron populations 1.21783 0.95215 1.01773 1.02370 1.21839 0.96634 0.95341 1.03085 1.21021 0.95002 0.93016 0.87520 0.89284 1.22188 0.95288 1.02854 1.01989 1.46093 1.71325 1.06948 1.13698 1.20417 0.76737 0.82159 0.90241 1.90771 1.49196 1.63869 1.36684 1.21827 1.04255 0.96696 0.96616 1.20759 1.02202 0.88246 0.85585 1.45148 1.76892 1.05705 1.13692 1.15997 0.79136 0.81466 0.84170 1.91043 1.52694 1.62544 1.33173 1.42631 1.71401 1.07139 1.10902 1.17765 0.94088 0.82077 0.90391 1.21226 1.21148 0.96737 0.95259 1.17715 0.86601 0.90236 0.93252 1.19473 1.30791 1.01812 0.95157 0.88645 1.26145 0.94937 0.98798 0.93577 1.69613 1.33070 1.39097 1.01501 0.86239 0.78190 0.80822 0.80476 1.19755 1.21863 1.16846 1.21737 1.14017 1.00395 0.93099 1.21648 0.94352 0.89071 0.97177 1.67290 1.24439 1.08600 1.26720 0.92543 0.92479 0.92508 0.90354 0.91405 0.91620 0.91858 0.92506 0.76662 0.88153 0.88175 0.90793 0.90827 0.77649 0.76224 0.87393 0.90323 0.87133 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.80 37.16 0.36 -0.31 16 2 C -0.13 -0.51 5.47 -26.73 -0.15 -0.66 16 3 C 0.14 0.85 2.57 -67.93 -0.17 0.68 16 4 H 0.09 0.75 7.58 -51.93 -0.39 0.35 16 5 C -0.16 -1.02 9.48 37.16 0.35 -0.66 16 6 N -0.73 -4.29 4.53 -53.80 -0.24 -4.53 16 7 C 0.52 4.70 7.79 -10.99 -0.09 4.62 16 8 O -0.53 -7.33 15.64 5.56 0.09 -7.24 16 9 C -0.15 -1.07 5.81 -27.88 -0.16 -1.23 16 10 C 0.16 1.89 4.96 -4.04 -0.02 1.87 16 11 N -0.76 -9.50 5.56 -65.22 -0.36 -9.86 16 12 C 0.69 12.88 8.51 -86.91 -0.74 12.14 16 13 O -0.52 -12.33 14.64 5.30 0.08 -12.26 16 14 N -0.67 -12.57 5.40 -15.86 -0.09 -12.65 16 15 C 0.39 8.97 7.40 -154.68 -1.15 7.82 16 16 C -0.32 -7.57 6.96 -38.45 -0.27 -7.84 16 17 C 0.13 3.30 5.09 -106.55 -0.54 2.76 16 18 C -0.44 -11.69 9.66 -37.65 -0.36 -12.05 16 19 H 0.10 2.64 8.06 -52.48 -0.42 2.21 16 20 C 0.08 2.16 5.48 -17.34 -0.10 2.06 16 21 N -0.81 -20.91 13.92 55.55 0.77 -20.14 16 22 Si 0.92 20.05 24.49 -169.99 -4.16 15.88 16 23 H -0.27 -5.52 6.71 56.52 0.38 -5.14 16 24 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.25 -5.64 6.70 56.52 0.38 -5.26 16 26 C -0.27 -6.34 9.85 -39.07 -0.38 -6.73 16 27 C 0.13 2.99 11.10 -18.04 -0.20 2.79 16 28 N -0.55 -13.70 7.90 -12.76 -0.10 -13.80 16 29 H 0.06 0.25 7.75 -51.93 -0.40 -0.15 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.40 1.22 8.60 -40.82 -0.35 0.87 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.39 3.34 8.49 -40.82 -0.35 3.00 16 43 H 0.40 5.88 8.72 -40.82 -0.36 5.53 16 44 H 0.11 2.44 4.79 -52.49 -0.25 2.19 16 45 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16 46 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 47 H 0.13 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -35.65 390.43 -8.94 -44.59 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.19 Total: 8.87 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.61 Total: 5.25 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.02 Total: -60.98 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.16 Total: -19.50 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.16 Total: 15.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.65 -8.94 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366308143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.316 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds