Wall clock time and date at job start Tue Mar 31 2020 19:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46993 * 2 1 4 4 H 1.09001 * 109.47440 * 304.99632 * 3 2 1 5 5 C 1.53010 * 109.47067 * 184.99934 * 3 2 1 6 6 N 1.46500 * 109.47471 * 65.00144 * 3 2 1 7 7 C 1.34771 * 120.00240 * 205.00017 * 6 3 2 8 8 O 1.21279 * 120.00232 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99954 * 179.97438 * 7 6 3 10 10 C 1.53003 * 109.46845 * 180.02562 * 9 7 6 11 11 N 1.46501 * 109.46703 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99925 * 179.97438 * 11 10 9 13 13 O 1.21577 * 119.99799 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00112 * 179.97438 * 12 11 10 15 15 C 1.39454 * 120.00224 * 184.82373 * 14 12 11 16 16 C 1.38644 * 119.64992 * 185.83266 * 15 14 12 17 17 C 1.40826 * 118.67290 * 179.72967 * 16 15 14 18 18 C 1.41542 * 120.99716 * 180.25442 * 17 16 15 19 19 H 1.08004 * 119.99848 * 146.64534 * 18 17 16 20 20 C 1.40029 * 119.99933 * 326.65259 * 18 17 16 21 21 N 1.30748 * 120.00210 * 168.30852 * 20 18 17 22 22 Si 1.86803 * 120.00247 * 348.30795 * 20 18 17 23 23 H 1.48500 * 109.46824 * 92.68469 * 22 20 18 24 24 H 1.48493 * 109.47301 * 212.69007 * 22 20 18 25 25 H 1.48502 * 109.46910 * 332.69018 * 22 20 18 26 26 C 1.41161 * 118.00609 * 0.27160 * 17 16 15 27 27 C 1.36598 * 119.12605 * 0.02562 * 26 17 16 28 28 N 1.32065 * 121.25890 * 0.02562 * 27 26 17 29 29 H 1.08992 * 109.47076 * 300.00016 * 1 2 3 30 30 H 1.09002 * 109.46487 * 59.99986 * 1 2 3 31 31 H 1.08993 * 109.46941 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46949 * 240.00049 * 2 1 3 33 33 H 1.08997 * 109.46638 * 120.00458 * 2 1 3 34 34 H 1.08991 * 109.46704 * 60.00077 * 5 3 2 35 35 H 1.08993 * 109.46988 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46744 * 300.00124 * 5 3 2 37 37 H 0.97003 * 120.00075 * 24.99266 * 6 3 2 38 38 H 1.08998 * 109.47335 * 59.99666 * 9 7 6 39 39 H 1.09002 * 109.46870 * 299.99694 * 9 7 6 40 40 H 1.08998 * 109.47448 * 59.99709 * 10 9 7 41 41 H 1.09002 * 109.47115 * 299.99518 * 10 9 7 42 42 H 0.97001 * 120.00447 * 0.02562 * 11 10 9 43 43 H 0.97005 * 119.99704 * 4.83053 * 14 12 11 44 44 H 1.07996 * 120.66466 * 0.02562 * 16 15 14 45 45 H 0.96995 * 119.99798 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.43763 * 179.97438 * 26 17 16 47 47 H 1.08000 * 119.36777 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 1.5257 3.4383 1.2996 8 8 1.7328 4.1028 0.3064 9 6 1.1265 4.1121 2.5872 10 6 1.0546 5.6249 2.3702 11 7 0.6660 6.2798 3.6217 12 6 0.5390 7.6208 3.6695 13 8 0.7466 8.2868 2.6738 14 7 0.1810 8.2232 4.8207 15 6 -0.0484 9.5985 4.8460 16 6 -0.2971 10.2302 6.0549 17 6 -0.5203 11.6207 6.0573 18 6 -0.7734 12.3162 7.2637 19 1 -0.4261 13.3317 7.3847 20 6 -1.4741 11.6877 8.3005 21 7 -1.5122 12.2328 9.4883 22 14 -2.3545 10.0703 7.9865 23 1 -1.4508 8.9413 8.3238 24 1 -3.5735 9.9981 8.8314 25 1 -2.7390 9.9859 6.5546 26 6 -0.4843 12.3000 4.8204 27 6 -0.2375 11.5908 3.6793 28 7 -0.0335 10.2864 3.7138 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8532 0.9570 -1.0570 35 1 3.9283 2.4719 -0.1253 36 1 3.9995 0.9052 0.7161 37 1 1.4871 1.5661 2.0463 38 1 1.8647 3.8898 3.3577 39 1 0.1502 3.7438 2.9024 40 1 0.3162 5.8469 1.5998 41 1 2.0307 5.9935 2.0547 42 1 0.5007 5.7484 4.4162 43 1 0.0829 7.7001 5.6317 44 1 -0.3146 9.6680 6.9768 45 1 -1.9979 11.7975 10.2062 46 1 -0.6505 13.3662 4.7767 47 1 -0.2094 12.1064 2.7308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366308143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:55 Heat of formation + Delta-G solvation = -67.158397 kcal Electronic energy + Delta-G solvation = -27489.526814 eV Core-core repulsion = 23477.879535 eV Total energy + Delta-G solvation = -4011.647279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.59052 -40.94449 -39.98215 -37.59054 -36.43140 -35.89131 -35.55161 -33.49259 -33.18253 -32.00296 -30.75301 -30.06860 -27.90995 -25.66564 -24.47969 -24.16686 -23.19756 -21.94737 -21.73669 -21.41811 -19.84637 -19.48474 -18.17988 -17.95867 -17.27186 -17.23200 -17.01815 -16.47532 -16.25326 -16.03723 -15.92761 -15.21921 -15.14656 -14.96817 -14.84081 -14.74251 -14.59272 -14.49430 -14.28561 -14.17239 -13.45451 -13.26169 -12.89232 -12.74972 -12.67857 -12.63833 -12.59584 -12.47156 -12.25007 -11.95433 -11.84868 -11.62447 -11.58098 -11.41889 -11.17381 -10.90975 -10.19047 -10.09225 -10.05496 -9.71987 -8.98068 -8.91017 -6.71349 0.60152 0.77426 1.25092 1.41503 1.43432 1.50731 1.64030 2.12564 2.19777 2.26436 2.72423 3.14539 3.52822 3.63899 3.77275 4.01178 4.04031 4.08080 4.13219 4.19856 4.44961 4.48959 4.53522 4.61034 4.64898 4.66857 4.75344 4.77213 4.85646 4.87237 4.92560 5.00038 5.13874 5.14142 5.18883 5.27980 5.29986 5.40376 5.42043 5.52259 5.59029 5.69863 5.86562 6.12805 6.29324 6.53256 6.57900 6.70714 6.93444 7.29464 7.52762 7.76085 8.15451 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023188 B = 0.001923 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.234601 B =14555.666401 C =15326.468397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.136 3.864 4 H 0.060 0.940 5 C -0.161 4.161 6 N -0.709 5.709 7 C 0.514 3.486 8 O -0.588 6.588 9 C -0.137 4.137 10 C 0.159 3.841 11 N -0.724 5.724 12 C 0.690 3.310 13 O -0.579 6.579 14 N -0.661 5.661 15 C 0.382 3.618 16 C -0.320 4.320 17 C 0.115 3.885 18 C -0.472 4.472 19 H 0.065 0.935 20 C 0.050 3.950 21 N -0.841 5.841 22 Si 0.968 3.032 23 H -0.239 1.239 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.279 4.279 27 C 0.128 3.872 28 N -0.574 5.574 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.418 0.582 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.417 0.583 43 H 0.424 0.576 44 H 0.122 0.878 45 H 0.297 0.703 46 H 0.121 0.879 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 -30.883 -8.509 32.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.031 3.969 4 H 0.078 0.922 5 C -0.219 4.219 6 N -0.362 5.362 7 C 0.301 3.699 8 O -0.468 6.468 9 C -0.177 4.177 10 C 0.034 3.966 11 N -0.384 5.384 12 C 0.389 3.611 13 O -0.453 6.453 14 N -0.311 5.311 15 C 0.152 3.848 16 C -0.345 4.345 17 C 0.107 3.893 18 C -0.503 4.503 19 H 0.083 0.917 20 C -0.166 4.166 21 N -0.467 5.467 22 Si 0.791 3.209 23 H -0.163 1.163 24 H -0.205 1.205 25 H -0.188 1.188 26 C -0.303 4.303 27 C -0.024 4.024 28 N -0.293 5.293 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.254 0.746 43 H 0.263 0.737 44 H 0.140 0.860 45 H 0.108 0.892 46 H 0.139 0.861 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.098 -30.303 -10.693 32.395 hybrid contribution -0.596 0.159 1.823 1.924 sum 3.502 -30.144 -8.871 31.616 Atomic orbital electron populations 1.21794 0.95532 1.02218 1.01701 1.21785 0.96207 0.93533 1.04413 1.21039 0.94972 0.94153 0.86690 0.92186 1.22148 0.95191 1.01280 1.03293 1.45949 1.69739 1.06093 1.14420 1.20814 0.76022 0.82906 0.90173 1.90762 1.52009 1.65255 1.38793 1.21744 1.07270 0.92357 0.96282 1.20695 0.99788 0.91636 0.84484 1.44804 1.74928 1.03635 1.15009 1.16222 0.78667 0.82976 0.83242 1.91013 1.54985 1.64314 1.34960 1.42461 1.70857 1.05686 1.12111 1.17977 0.93193 0.83853 0.89785 1.21301 1.20906 0.96229 0.96082 1.17901 0.86773 0.91359 0.93273 1.19448 1.33001 1.01056 0.96809 0.91713 1.26853 0.94971 1.01813 0.93012 1.69633 1.34015 1.40716 1.02322 0.85456 0.78086 0.78094 0.79295 1.16322 1.20456 1.18754 1.21923 1.14225 1.01130 0.92976 1.22083 0.93266 0.88875 0.98159 1.67420 1.24812 1.09359 1.27722 0.92382 0.94033 0.91484 0.89657 0.89416 0.90661 0.94806 0.90855 0.74467 0.84624 0.84715 0.93579 0.93485 0.74593 0.73746 0.86016 0.89193 0.86081 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.80 71.98 0.71 -0.33 16 2 C -0.12 -0.65 5.47 30.59 0.17 -0.48 16 3 C 0.14 1.52 2.57 44.99 0.12 1.63 16 4 H 0.06 1.05 7.58 -2.39 -0.02 1.03 16 5 C -0.16 -1.82 9.48 71.99 0.68 -1.13 16 6 N -0.71 -6.77 4.53 -442.53 -2.00 -8.78 16 7 C 0.51 8.64 7.79 87.66 0.68 9.32 16 8 O -0.59 -16.83 15.64 -3.03 -0.05 -16.87 16 9 C -0.14 -1.46 5.81 29.85 0.17 -1.29 16 10 C 0.16 3.63 4.96 86.38 0.43 4.06 16 11 N -0.72 -16.30 5.56 -478.53 -2.66 -18.96 16 12 C 0.69 24.58 8.51 179.05 1.52 26.10 16 13 O -0.58 -27.24 14.64 -3.96 -0.06 -27.30 16 14 N -0.66 -23.18 5.40 -322.37 -1.74 -24.92 16 15 C 0.38 17.29 7.40 132.76 0.98 18.27 16 16 C -0.32 -14.83 6.96 23.00 0.16 -14.67 16 17 C 0.12 5.87 5.09 -21.11 -0.11 5.76 16 18 C -0.47 -25.64 9.66 23.52 0.23 -25.41 16 19 H 0.06 3.78 8.06 -2.91 -0.02 3.75 16 20 C 0.05 2.53 5.48 85.29 0.47 3.00 16 21 N -0.84 -43.76 13.92 21.84 0.30 -43.46 16 22 Si 0.97 39.77 24.49 68.60 1.68 41.45 16 23 H -0.24 -8.53 6.71 99.48 0.67 -7.86 16 24 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.26 -11.57 6.70 99.48 0.67 -10.90 16 26 C -0.28 -13.25 9.85 22.60 0.22 -13.03 16 27 C 0.13 5.87 11.10 84.27 0.94 6.80 16 28 N -0.57 -28.20 7.90 -194.27 -1.53 -29.73 16 29 H 0.06 0.36 7.75 -2.39 -0.02 0.34 16 30 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.42 0.93 8.60 -92.71 -0.80 0.13 16 38 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 41 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 42 H 0.42 5.23 8.49 -92.71 -0.79 4.44 16 43 H 0.42 10.82 8.72 -92.70 -0.81 10.01 16 44 H 0.12 5.21 4.79 -2.91 -0.01 5.19 16 45 H 0.30 13.75 8.29 -92.71 -0.77 12.98 16 46 H 0.12 5.34 8.06 -2.91 -0.02 5.31 16 47 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -82.55 390.43 -0.15 -82.70 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.45 Total: 27.26 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 7.37 Total: 18.60 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -7.63 Total: -125.84 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -0.11 Total: -44.17 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 1.68 Total: 41.45 kcal Total: -82.55 -0.15 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366308143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.539 kcal (2) G-P(sol) polarization free energy of solvation -82.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds