Wall clock time and date at job start Tue Mar 31 2020 18:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47027 * 120.00084 * 2 1 3 5 5 H 1.08995 * 109.47110 * 54.14760 * 4 2 1 6 6 N 1.46497 * 109.47006 * 294.14296 * 4 2 1 7 7 C 1.34775 * 120.00041 * 85.00304 * 6 4 2 8 8 N 1.34781 * 120.00365 * 179.97438 * 7 6 4 9 9 O 1.21590 * 119.99739 * 359.97438 * 7 6 4 10 10 C 1.50703 * 109.46793 * 174.14634 * 4 2 1 11 11 O 1.21282 * 119.99677 * 113.01715 * 10 4 2 12 12 N 1.34775 * 120.00241 * 293.01400 * 10 4 2 13 13 C 1.46502 * 119.99768 * 355.43439 * 12 10 4 14 14 C 1.50704 * 109.46563 * 273.41091 * 13 12 10 15 15 H 1.07994 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99810 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00048 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00053 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47301 * 89.99772 * 18 16 14 20 20 H 1.48499 * 109.46978 * 209.99964 * 18 16 14 21 21 H 1.48503 * 109.46868 * 329.99451 * 18 16 14 22 22 C 1.46493 * 120.00312 * 175.42457 * 12 10 4 23 23 C 1.50701 * 109.46939 * 90.00449 * 22 12 10 24 24 C 1.38230 * 119.61989 * 94.97878 * 23 22 12 25 25 C 1.38625 * 119.15957 * 179.79489 * 24 23 22 26 26 C 1.38681 * 118.42308 * 0.46815 * 25 24 23 27 27 C 1.38179 * 119.15917 * 359.50984 * 26 25 24 28 28 N 1.31861 * 119.61648 * 275.00110 * 23 22 12 29 29 H 1.09004 * 109.47401 * 59.99855 * 1 2 3 30 30 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47224 * 300.00286 * 1 2 3 32 32 H 1.08997 * 109.47092 * 240.00241 * 2 1 3 33 33 H 1.09004 * 109.47045 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47514 * 299.99889 * 3 2 1 35 35 H 1.08999 * 109.47361 * 59.99798 * 3 2 1 36 36 H 0.97003 * 119.99972 * 265.00325 * 6 4 2 37 37 H 0.97001 * 119.99563 * 359.97438 * 8 7 6 38 38 H 0.97002 * 119.99998 * 180.02562 * 8 7 6 39 39 H 1.09003 * 109.47313 * 33.40585 * 13 12 10 40 40 H 1.08998 * 109.47108 * 153.41115 * 13 12 10 41 41 H 0.97005 * 119.99636 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47116 * 330.00755 * 22 12 10 43 43 H 1.08997 * 109.47736 * 210.00439 * 22 12 10 44 44 H 1.07997 * 120.41668 * 359.97438 * 24 23 22 45 45 H 1.08005 * 120.79116 * 180.23218 * 25 24 23 46 46 H 1.07995 * 120.42042 * 179.78576 * 26 25 24 47 47 H 1.08004 * 119.61828 * 180.25026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5936 -1.7142 1.3031 6 7 1.6701 0.0459 2.4412 7 6 0.4546 -0.1203 2.9992 8 7 0.1144 0.5851 4.0961 9 8 -0.3352 -0.9066 2.5130 10 6 3.5400 -0.8480 1.1789 11 8 4.2372 -0.2428 1.9654 12 7 4.1068 -1.6338 0.2420 13 6 3.2645 -2.4422 -0.6431 14 6 2.9581 -3.7600 0.0209 15 1 3.3510 -3.9736 1.0039 16 6 2.1761 -4.6928 -0.6266 17 7 1.6972 -4.4324 -1.8236 18 14 1.7957 -6.3259 0.1966 19 1 0.5490 -6.1999 0.9937 20 1 1.6163 -7.3732 -0.8407 21 1 2.9194 -6.7028 1.0913 22 6 5.5649 -1.6794 0.1085 23 6 6.1165 -2.7674 0.9933 24 6 6.3565 -4.0219 0.4647 25 6 6.8680 -5.0145 1.2862 26 6 7.1110 -4.7096 2.6171 27 6 6.8467 -3.4328 3.0744 28 7 6.3643 -2.5118 2.2629 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.3001 0.6735 2.8289 37 1 0.7447 1.2122 4.4842 38 1 -0.7603 0.4653 4.4979 39 1 2.3339 -1.9115 -0.8438 40 1 3.7902 -2.6215 -1.5810 41 1 1.1467 -5.0886 -2.2790 42 1 5.9872 -0.7197 0.4065 43 1 5.8286 -1.8860 -0.9287 44 1 6.1507 -4.2253 -0.5758 45 1 7.0689 -6.0028 0.8998 46 1 7.5060 -5.4594 3.2865 47 1 7.0371 -3.1862 4.1086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433668121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:40 Heat of formation + Delta-G solvation = -25.165616 kcal Electronic energy + Delta-G solvation = -30859.068471 eV Core-core repulsion = 26849.242136 eV Total energy + Delta-G solvation = -4009.826335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.35725 -39.68980 -38.62604 -35.67565 -35.23919 -33.54767 -32.76344 -32.05019 -31.95732 -31.25529 -27.92094 -27.20341 -26.66437 -25.27530 -23.18607 -22.86458 -21.78627 -21.21735 -19.64560 -18.91955 -18.00980 -16.95152 -16.71017 -16.40099 -15.94221 -15.81219 -15.61806 -15.14305 -15.08694 -14.39507 -14.34078 -14.10351 -13.82152 -13.56339 -13.23238 -13.09523 -12.84646 -12.68220 -12.38531 -12.20713 -11.78015 -11.69514 -11.51512 -11.43124 -11.34971 -10.96384 -10.89044 -10.83107 -10.54828 -10.24900 -10.06436 -9.86563 -9.68180 -9.43199 -9.37883 -9.09787 -8.97229 -8.63322 -8.53896 -8.41374 -7.78384 -6.16571 -4.21826 1.50717 1.74701 3.10530 3.25737 3.31252 3.33212 3.38173 3.58122 3.88891 4.34334 4.43323 4.74113 4.79096 5.11090 5.17607 5.18804 5.21955 5.31932 5.44792 5.46405 5.56268 5.67242 5.83741 5.93236 6.05049 6.11589 6.14354 6.18405 6.28313 6.32273 6.37626 6.49357 6.53780 6.60451 6.63550 6.69822 6.84305 6.95763 6.97579 7.12055 7.16065 7.23725 7.47681 7.78337 8.06081 8.22001 8.30646 8.50188 8.78432 8.94119 8.98143 9.45596 10.90148 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009254 B = 0.005564 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.044367 B = 5031.549735 C = 6296.744718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.154 3.846 5 H 0.126 0.874 6 N -0.722 5.722 7 C 0.704 3.296 8 N -0.873 5.873 9 O -0.584 6.584 10 C 0.520 3.480 11 O -0.551 6.551 12 N -0.587 5.587 13 C 0.222 3.778 14 C -0.531 4.531 15 H 0.057 0.943 16 C 0.071 3.929 17 N -0.888 5.888 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.172 3.828 23 C 0.123 3.877 24 C -0.133 4.133 25 C -0.084 4.084 26 C -0.181 4.181 27 C 0.086 3.914 28 N -0.458 5.458 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.400 0.600 37 H 0.394 0.606 38 H 0.411 0.589 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.118 7.478 5.239 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.046 3.954 5 H 0.143 0.857 6 N -0.379 5.379 7 C 0.402 3.598 8 N -0.441 5.441 9 O -0.461 6.461 10 C 0.307 3.693 11 O -0.430 6.430 12 N -0.318 5.318 13 C 0.103 3.897 14 C -0.570 4.570 15 H 0.075 0.925 16 C -0.132 4.132 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.048 3.952 23 C -0.016 4.016 24 C -0.153 4.153 25 C -0.110 4.110 26 C -0.201 4.201 27 C -0.071 4.071 28 N -0.168 5.168 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.236 0.764 37 H 0.221 0.779 38 H 0.242 0.758 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.651 7.834 5.233 10.506 hybrid contribution 0.053 -1.707 0.735 1.859 sum 4.703 6.127 5.968 9.761 Atomic orbital electron populations 1.21785 0.93811 1.02931 1.00312 1.21716 0.97387 0.96026 0.97789 1.21799 1.00687 0.96240 1.01188 1.20705 0.92246 0.98023 0.84464 0.85663 1.44773 1.15443 1.46600 1.31068 1.15877 0.82521 0.81097 0.80272 1.42969 1.21275 1.48054 1.31802 1.91011 1.51056 1.39595 1.64478 1.20320 0.89735 0.78898 0.80338 1.90619 1.64015 1.48056 1.40339 1.48079 1.05279 1.43094 1.35340 1.19872 0.90648 0.90172 0.89036 1.21372 1.32013 1.00232 1.03365 0.92493 1.24841 0.95308 0.98381 0.94714 1.69900 1.34165 1.35647 1.12880 0.86635 0.79100 0.83423 0.79258 1.20337 1.21101 1.19975 1.20125 0.81426 0.96650 0.97020 1.21635 0.94186 0.94587 0.91230 1.21986 0.98002 0.93493 1.01834 1.21498 0.96548 0.99222 0.93706 1.22032 1.03179 0.98321 0.96583 1.22632 0.95723 0.89513 0.99249 1.67567 1.09726 1.35509 1.03952 0.93953 0.91541 0.92813 0.88198 0.92951 0.92904 0.93041 0.76416 0.77909 0.75767 0.92632 0.94423 0.92554 0.89398 0.89327 0.84597 0.85445 0.85687 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.81 37.16 0.29 -2.01 16 2 C -0.11 -1.90 2.35 -90.62 -0.21 -2.11 16 3 C -0.14 -2.08 8.79 37.16 0.33 -1.75 16 4 C 0.15 2.96 1.54 -69.08 -0.11 2.85 16 5 H 0.13 2.91 6.84 -51.93 -0.35 2.56 16 6 N -0.72 -11.91 3.94 -59.81 -0.24 -12.14 16 7 C 0.70 11.66 7.45 -86.92 -0.65 11.01 16 8 N -0.87 -9.77 8.88 27.64 0.25 -9.52 16 9 O -0.58 -12.14 14.32 5.29 0.08 -12.07 16 10 C 0.52 10.45 6.03 -10.98 -0.07 10.38 16 11 O -0.55 -11.59 15.45 5.56 0.09 -11.51 16 12 N -0.59 -11.73 2.45 -176.43 -0.43 -12.16 16 13 C 0.22 4.95 4.68 -5.19 -0.02 4.92 16 14 C -0.53 -13.45 8.93 -34.44 -0.31 -13.76 16 15 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 16 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 17 N -0.89 -23.88 13.29 55.43 0.74 -23.14 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.17 3.07 5.72 -5.20 -0.03 3.04 16 23 C 0.12 2.28 6.36 -82.58 -0.53 1.76 16 24 C -0.13 -2.29 9.72 -39.44 -0.38 -2.67 16 25 C -0.08 -1.29 10.18 -39.27 -0.40 -1.69 16 26 C -0.18 -2.65 10.11 -39.44 -0.40 -3.05 16 27 C 0.09 1.40 11.18 -17.55 -0.20 1.21 16 28 N -0.46 -8.78 10.27 -9.47 -0.10 -8.87 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.35 7.89 -51.93 -0.41 0.94 16 31 H 0.05 0.94 5.62 -51.93 -0.29 0.65 16 32 H 0.10 1.86 5.26 -51.93 -0.27 1.59 16 33 H 0.05 0.80 7.41 -51.93 -0.38 0.41 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.71 7.45 -51.93 -0.39 0.33 16 36 H 0.40 6.00 7.75 -40.82 -0.32 5.68 16 37 H 0.39 3.24 8.84 -40.82 -0.36 2.88 16 38 H 0.41 3.99 8.93 -40.82 -0.36 3.63 16 39 H 0.06 1.28 4.15 -51.93 -0.22 1.07 16 40 H 0.04 0.86 7.85 -51.93 -0.41 0.45 16 41 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 42 H 0.09 1.55 7.49 -51.93 -0.39 1.16 16 43 H 0.09 1.36 7.77 -51.93 -0.40 0.96 16 44 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -32.06 383.66 -8.28 -40.34 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -6.64 Total: 17.33 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.78 Total: 9.88 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 0.22 Total: -65.83 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.16 Total: -23.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.06 -8.28 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433668121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.178 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds