Wall clock time and date at job start Tue Mar 31 2020 18:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47008 * 2 1 4 4 C 1.53000 * 109.47027 * 120.00084 * 2 1 3 5 5 H 1.08995 * 109.47110 * 54.14760 * 4 2 1 6 6 N 1.46497 * 109.47006 * 294.14296 * 4 2 1 7 7 C 1.34775 * 120.00041 * 85.00304 * 6 4 2 8 8 N 1.34781 * 120.00365 * 179.97438 * 7 6 4 9 9 O 1.21590 * 119.99739 * 359.97438 * 7 6 4 10 10 C 1.50703 * 109.46793 * 174.14634 * 4 2 1 11 11 O 1.21282 * 119.99677 * 113.01715 * 10 4 2 12 12 N 1.34775 * 120.00241 * 293.01400 * 10 4 2 13 13 C 1.46502 * 119.99768 * 355.43439 * 12 10 4 14 14 C 1.50704 * 109.46563 * 273.41091 * 13 12 10 15 15 H 1.07994 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99810 * 180.02562 * 14 13 12 17 17 N 1.31523 * 120.00048 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00053 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47301 * 89.99772 * 18 16 14 20 20 H 1.48499 * 109.46978 * 209.99964 * 18 16 14 21 21 H 1.48503 * 109.46868 * 329.99451 * 18 16 14 22 22 C 1.46493 * 120.00312 * 175.42457 * 12 10 4 23 23 C 1.50701 * 109.46939 * 90.00449 * 22 12 10 24 24 C 1.38230 * 119.61989 * 94.97878 * 23 22 12 25 25 C 1.38625 * 119.15957 * 179.79489 * 24 23 22 26 26 C 1.38681 * 118.42308 * 0.46815 * 25 24 23 27 27 C 1.38179 * 119.15917 * 359.50984 * 26 25 24 28 28 N 1.31861 * 119.61648 * 275.00110 * 23 22 12 29 29 H 1.09004 * 109.47401 * 59.99855 * 1 2 3 30 30 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47224 * 300.00286 * 1 2 3 32 32 H 1.08997 * 109.47092 * 240.00241 * 2 1 3 33 33 H 1.09004 * 109.47045 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47514 * 299.99889 * 3 2 1 35 35 H 1.08999 * 109.47361 * 59.99798 * 3 2 1 36 36 H 0.97003 * 119.99972 * 265.00325 * 6 4 2 37 37 H 0.97001 * 119.99563 * 359.97438 * 8 7 6 38 38 H 0.97002 * 119.99998 * 180.02562 * 8 7 6 39 39 H 1.09003 * 109.47313 * 33.40585 * 13 12 10 40 40 H 1.08998 * 109.47108 * 153.41115 * 13 12 10 41 41 H 0.97005 * 119.99636 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.47116 * 330.00755 * 22 12 10 43 43 H 1.08997 * 109.47736 * 210.00439 * 22 12 10 44 44 H 1.07997 * 120.41668 * 359.97438 * 24 23 22 45 45 H 1.08005 * 120.79116 * 180.23218 * 25 24 23 46 46 H 1.07995 * 120.42042 * 179.78576 * 26 25 24 47 47 H 1.08004 * 119.61828 * 180.25026 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5936 -1.7142 1.3031 6 7 1.6701 0.0459 2.4412 7 6 0.4546 -0.1203 2.9992 8 7 0.1144 0.5851 4.0961 9 8 -0.3352 -0.9066 2.5130 10 6 3.5400 -0.8480 1.1789 11 8 4.2372 -0.2428 1.9654 12 7 4.1068 -1.6338 0.2420 13 6 3.2645 -2.4422 -0.6431 14 6 2.9581 -3.7600 0.0209 15 1 3.3510 -3.9736 1.0039 16 6 2.1761 -4.6928 -0.6266 17 7 1.6972 -4.4324 -1.8236 18 14 1.7957 -6.3259 0.1966 19 1 0.5490 -6.1999 0.9937 20 1 1.6163 -7.3732 -0.8407 21 1 2.9194 -6.7028 1.0913 22 6 5.5649 -1.6794 0.1085 23 6 6.1165 -2.7674 0.9933 24 6 6.3565 -4.0219 0.4647 25 6 6.8680 -5.0145 1.2862 26 6 7.1110 -4.7096 2.6171 27 6 6.8467 -3.4328 3.0744 28 7 6.3643 -2.5118 2.2629 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.3001 0.6735 2.8289 37 1 0.7447 1.2122 4.4842 38 1 -0.7603 0.4653 4.4979 39 1 2.3339 -1.9115 -0.8438 40 1 3.7902 -2.6215 -1.5810 41 1 1.1467 -5.0886 -2.2790 42 1 5.9872 -0.7197 0.4065 43 1 5.8286 -1.8860 -0.9287 44 1 6.1507 -4.2253 -0.5758 45 1 7.0689 -6.0028 0.8998 46 1 7.5060 -5.4594 3.2865 47 1 7.0371 -3.1862 4.1086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433668121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:39 Heat of formation + Delta-G solvation = -48.238157 kcal Electronic energy + Delta-G solvation = -30860.068972 eV Core-core repulsion = 26849.242136 eV Total energy + Delta-G solvation = -4010.826835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82981 -40.98986 -40.08191 -37.10580 -36.89773 -34.86316 -34.64337 -33.33648 -33.26257 -32.65361 -29.52100 -28.87325 -27.98774 -26.73954 -24.93947 -24.25266 -23.10796 -22.56207 -21.07854 -20.40676 -19.35354 -18.64513 -18.19887 -17.78288 -17.34624 -17.24901 -17.00969 -16.75189 -16.43049 -16.15272 -15.72348 -15.56304 -15.21395 -14.94744 -14.62853 -14.44405 -14.37732 -14.04732 -13.98034 -13.70672 -13.41543 -13.25310 -13.06235 -12.91868 -12.79080 -12.64712 -12.52165 -12.30520 -12.13353 -11.93035 -11.79472 -11.42576 -11.31156 -10.78178 -10.67800 -10.56920 -10.48524 -10.30928 -9.97213 -9.80873 -9.43917 -8.18258 -6.27118 0.23620 0.48853 1.33436 1.39061 1.44018 1.67393 1.82470 2.23854 2.35920 2.48085 3.07249 3.13768 3.46932 3.57445 3.69286 3.88081 3.94176 4.06316 4.08419 4.24848 4.30338 4.33718 4.52644 4.62384 4.64187 4.72710 4.83429 4.84713 4.92736 4.95193 4.99552 5.01669 5.14183 5.26397 5.29481 5.33406 5.36104 5.50701 5.52543 5.69168 5.82264 5.89176 5.94598 6.08473 6.10765 6.52529 6.82503 7.12673 7.20840 7.27856 7.43326 7.72291 8.87042 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009254 B = 0.005564 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.044367 B = 5031.549735 C = 6296.744718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.131 4.131 4 C 0.163 3.837 5 H 0.080 0.920 6 N -0.715 5.715 7 C 0.700 3.300 8 N -0.845 5.845 9 O -0.630 6.630 10 C 0.520 3.480 11 O -0.560 6.560 12 N -0.586 5.586 13 C 0.236 3.764 14 C -0.525 4.525 15 H 0.035 0.965 16 C 0.033 3.967 17 N -0.910 5.910 18 Si 0.933 3.067 19 H -0.289 1.289 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.169 3.831 23 C 0.100 3.900 24 C -0.148 4.148 25 C -0.089 4.089 26 C -0.171 4.171 27 C 0.072 3.928 28 N -0.492 5.492 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.410 0.590 37 H 0.412 0.588 38 H 0.422 0.578 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.266 0.734 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.136 0.864 45 H 0.155 0.845 46 H 0.163 0.837 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.928 7.800 6.254 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.125 4.125 3 C -0.188 4.188 4 C 0.053 3.947 5 H 0.098 0.902 6 N -0.373 5.373 7 C 0.398 3.602 8 N -0.415 5.415 9 O -0.511 6.511 10 C 0.307 3.693 11 O -0.440 6.440 12 N -0.316 5.316 13 C 0.116 3.884 14 C -0.564 4.564 15 H 0.054 0.946 16 C -0.168 4.168 17 N -0.549 5.549 18 Si 0.760 3.240 19 H -0.216 1.216 20 H -0.200 1.200 21 H -0.197 1.197 22 C 0.045 3.955 23 C -0.038 4.038 24 C -0.168 4.168 25 C -0.115 4.115 26 C -0.191 4.191 27 C -0.086 4.086 28 N -0.201 5.201 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.247 0.753 37 H 0.243 0.757 38 H 0.255 0.745 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.154 0.846 45 H 0.172 0.828 46 H 0.181 0.819 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.490 8.197 6.289 11.699 hybrid contribution -0.154 -1.813 0.527 1.894 sum 5.336 6.384 6.816 10.756 Atomic orbital electron populations 1.21652 0.93884 1.00836 1.01330 1.21644 0.97152 0.97583 0.96116 1.21708 1.00224 0.94185 1.02728 1.20406 0.91333 0.96535 0.86429 0.90197 1.44600 1.15770 1.46398 1.30515 1.16081 0.81961 0.81081 0.81094 1.42678 1.22087 1.46937 1.29789 1.90993 1.52261 1.41730 1.66085 1.20447 0.90019 0.78724 0.80099 1.90601 1.64360 1.48506 1.40527 1.48004 1.06162 1.42563 1.34913 1.19552 0.90733 0.89208 0.88874 1.21400 1.31300 1.01381 1.02271 0.94631 1.25354 0.95551 1.00677 0.95242 1.69954 1.34898 1.36407 1.13644 0.85938 0.78222 0.81225 0.78621 1.21559 1.19951 1.19744 1.20296 0.79930 0.96882 0.98344 1.21663 0.95487 0.95204 0.91473 1.22105 0.98729 0.93722 1.02271 1.21908 0.95633 0.99949 0.94032 1.22429 1.01534 0.98407 0.96744 1.23156 0.95304 0.90000 1.00096 1.67525 1.10998 1.37128 1.04481 0.91848 0.95169 0.92693 0.89746 0.93488 0.90905 0.91943 0.75273 0.75724 0.74505 0.93281 0.94771 0.92491 0.89434 0.87390 0.84629 0.82764 0.81934 0.81317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 7.81 71.98 0.56 -3.69 16 2 C -0.11 -3.68 2.35 -10.79 -0.03 -3.70 16 3 C -0.13 -3.66 8.79 71.98 0.63 -3.03 16 4 C 0.16 6.38 1.54 44.25 0.07 6.45 16 5 H 0.08 3.92 6.84 -2.39 -0.02 3.90 16 6 N -0.72 -23.41 3.94 -461.42 -1.82 -25.23 16 7 C 0.70 22.91 7.45 179.05 1.33 24.24 16 8 N -0.84 -17.45 8.88 -184.74 -1.64 -19.09 16 9 O -0.63 -26.73 14.32 -4.00 -0.06 -26.79 16 10 C 0.52 21.16 6.03 87.66 0.53 21.69 16 11 O -0.56 -23.51 15.45 -3.03 -0.05 -23.55 16 12 N -0.59 -23.84 2.45 -830.51 -2.03 -25.87 16 13 C 0.24 10.82 4.68 85.63 0.40 11.22 16 14 C -0.52 -27.16 8.93 25.60 0.23 -26.94 16 15 H 0.04 1.98 7.81 -2.91 -0.02 1.95 16 16 C 0.03 1.73 5.46 84.65 0.46 2.19 16 17 N -0.91 -49.58 13.29 21.45 0.28 -49.30 16 18 Si 0.93 43.55 29.54 68.60 2.03 45.57 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 22 C 0.17 6.08 5.72 85.63 0.49 6.57 16 23 C 0.10 3.73 6.36 42.55 0.27 4.00 16 24 C -0.15 -5.03 9.72 22.36 0.22 -4.82 16 25 C -0.09 -2.59 10.18 22.47 0.23 -2.36 16 26 C -0.17 -4.58 10.11 22.36 0.23 -4.36 16 27 C 0.07 2.22 11.18 84.67 0.95 3.17 16 28 N -0.49 -18.65 10.27 -183.88 -1.89 -20.54 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.26 7.89 -2.39 -0.02 1.24 16 31 H 0.05 1.92 5.62 -2.39 -0.01 1.90 16 32 H 0.08 3.22 5.26 -2.39 -0.01 3.21 16 33 H 0.05 1.37 7.41 -2.38 -0.02 1.35 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.60 7.45 -2.39 -0.02 1.58 16 36 H 0.41 11.83 7.75 -92.71 -0.72 11.11 16 37 H 0.41 5.74 8.84 -92.71 -0.82 4.92 16 38 H 0.42 7.41 8.93 -92.71 -0.83 6.58 16 39 H 0.05 2.35 4.15 -2.39 -0.01 2.34 16 40 H 0.03 1.59 7.85 -2.39 -0.02 1.57 16 41 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 42 H 0.09 3.12 7.49 -2.39 -0.02 3.10 16 43 H 0.11 3.34 7.77 -2.39 -0.02 3.32 16 44 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 45 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 46 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.17 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -70.75 383.66 0.07 -70.68 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -1.33 Total: 43.46 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 6.57 Total: 30.65 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -7.09 Total: -140.03 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.10 Total: -50.34 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.75 0.07 -70.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433668121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.443 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds