Wall clock time and date at job start Tue Mar 31 2020 17:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47312 * 2 1 4 4 C 1.52999 * 109.46811 * 239.99891 * 2 1 3 5 5 C 1.50703 * 109.46966 * 120.00494 * 2 1 3 6 6 C 1.38773 * 120.00256 * 74.99736 * 5 2 1 7 7 C 1.38612 * 118.03581 * 179.97438 * 6 5 2 8 8 C 1.39400 * 117.90626 * 359.97438 * 7 6 5 9 9 N 1.39433 * 120.14942 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00005 * 185.07017 * 9 8 7 11 11 O 1.21583 * 120.00004 * 354.90971 * 10 9 8 12 12 N 1.34783 * 120.00155 * 174.64004 * 10 9 8 13 13 C 1.47430 * 125.64268 * 359.96052 * 12 10 9 14 14 C 1.55138 * 104.71530 * 155.81837 * 13 12 10 15 15 C 1.55157 * 101.48622 * 37.29751 * 14 13 12 16 16 O 1.42907 * 110.71835 * 82.69301 * 15 14 13 17 17 C 1.50692 * 110.87183 * 205.89348 * 15 14 13 18 18 H 1.08001 * 120.00295 * 355.06884 * 17 15 14 19 19 C 1.37879 * 120.00041 * 175.06419 * 17 15 14 20 20 N 1.31514 * 119.99854 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99854 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47147 * 90.00070 * 21 19 17 23 23 H 1.48503 * 109.46996 * 209.99783 * 21 19 17 24 24 H 1.48500 * 109.47382 * 329.99847 * 21 19 17 25 25 C 1.47014 * 125.64897 * 180.27504 * 12 10 9 26 26 N 1.32441 * 119.70109 * 0.25161 * 8 7 6 27 27 N 1.28349 * 122.08150 * 359.47526 * 26 8 7 28 28 H 1.09009 * 109.46786 * 300.00217 * 1 2 3 29 29 H 1.09000 * 109.47186 * 59.99322 * 1 2 3 30 30 H 1.09001 * 109.47720 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46798 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47287 * 299.99810 * 3 2 1 33 33 H 1.08999 * 109.47171 * 60.00677 * 3 2 1 34 34 H 1.09001 * 109.47126 * 300.00544 * 4 2 1 35 35 H 1.09003 * 109.47148 * 59.99911 * 4 2 1 36 36 H 1.09000 * 109.47554 * 180.02562 * 4 2 1 37 37 H 1.08006 * 120.98158 * 359.95345 * 6 5 2 38 38 H 1.07993 * 121.04957 * 179.97438 * 7 6 5 39 39 H 0.97007 * 119.99996 * 5.06074 * 9 8 7 40 40 H 1.08991 * 110.37189 * 274.74635 * 13 12 10 41 41 H 1.08995 * 110.36463 * 37.07518 * 13 12 10 42 42 H 1.08990 * 111.19440 * 279.18855 * 14 13 12 43 43 H 1.09004 * 110.89800 * 155.27438 * 14 13 12 44 44 H 0.96697 * 113.99684 * 185.02395 * 16 15 14 45 45 H 0.96999 * 119.99598 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.88598 * 300.43347 * 25 12 10 47 47 H 1.09005 * 109.88871 * 61.45064 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.9703 -2.0948 1.3063 7 6 2.4441 -2.7061 2.4565 8 6 2.9543 -1.8910 3.4658 9 7 3.4428 -2.4566 4.6429 10 6 3.8404 -1.6634 5.6573 11 8 3.8607 -0.4563 5.5130 12 7 4.2104 -2.2078 6.8334 13 6 4.2273 -3.6485 7.1458 14 6 5.2632 -3.7912 8.2917 15 6 4.9984 -2.5000 9.1102 16 8 3.8930 -2.6818 9.9976 17 6 6.2299 -2.0862 9.8736 18 1 7.1081 -2.7148 9.8636 19 6 6.2357 -0.9050 10.5848 20 7 5.1662 -0.1398 10.5974 21 14 7.7627 -0.3917 11.5305 22 1 8.6393 0.4225 10.6509 23 1 7.3649 0.4123 12.7140 24 1 8.4976 -1.6018 11.9785 25 6 4.6579 -1.4629 8.0193 26 7 2.9678 -0.5767 3.3038 27 7 2.5320 -0.0171 2.2341 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4423 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6765 -1.7489 -1.2493 35 1 1.6765 -0.2075 -2.1392 36 1 3.1299 -0.7218 -1.2491 37 1 1.5645 -2.6785 0.4932 38 1 2.4189 -3.7801 2.5674 39 1 3.4963 -3.4211 4.7318 40 1 3.2425 -3.9761 7.4786 41 1 4.5444 -4.2218 6.2747 42 1 6.2813 -3.8054 7.9030 43 1 5.0623 -4.6806 8.8890 44 1 3.6374 -1.8816 10.4765 45 1 5.1704 0.6914 11.0974 46 1 5.5438 -0.8764 7.7762 47 1 3.8613 -0.8046 8.3661 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434703723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:23 Heat of formation + Delta-G solvation = -34.171495 kcal Electronic energy + Delta-G solvation = -28961.885518 eV Core-core repulsion = 24951.668658 eV Total energy + Delta-G solvation = -4010.216859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43568 -41.24172 -39.33188 -38.01449 -36.22580 -36.04476 -34.24357 -33.79863 -32.11454 -30.97833 -29.57409 -28.38652 -28.10352 -27.17581 -25.60685 -25.25181 -24.04461 -21.56164 -21.37366 -20.81581 -19.64532 -19.03257 -18.76335 -17.80857 -17.29184 -17.02873 -16.85916 -16.26689 -16.14249 -16.04470 -15.21973 -15.08742 -14.93219 -14.79668 -14.72061 -14.65673 -14.21407 -13.95286 -13.53040 -13.37386 -13.21907 -13.10153 -12.87472 -12.81613 -12.55497 -12.51534 -12.43830 -12.32423 -12.29547 -12.10774 -11.87540 -11.82312 -11.78050 -11.21508 -11.16974 -11.08157 -10.67776 -10.35391 -10.27132 -9.92383 -9.43742 -8.27784 -6.43562 -0.07857 0.01018 1.23503 1.40491 1.42176 1.51728 1.98263 2.36118 2.64831 2.69771 2.99331 3.13254 3.50433 3.67326 3.70033 3.76644 4.02178 4.04436 4.08825 4.14103 4.16514 4.32312 4.38247 4.54143 4.57749 4.68580 4.74813 4.81591 4.90726 4.93067 4.97379 5.02858 5.05683 5.06912 5.10960 5.18133 5.20718 5.29371 5.33983 5.44492 5.46578 5.49481 5.51208 5.73038 5.87957 6.06282 6.63071 6.81330 7.25434 7.33289 7.37095 7.94272 8.78236 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.002411 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.767330 B =11609.467779 C =12257.087644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 C -0.133 4.133 4 C -0.137 4.137 5 C 0.038 3.962 6 C -0.077 4.077 7 C -0.135 4.135 8 C 0.291 3.709 9 N -0.643 5.643 10 C 0.700 3.300 11 O -0.587 6.587 12 N -0.628 5.628 13 C 0.102 3.898 14 C -0.109 4.109 15 C 0.234 3.766 16 O -0.586 6.586 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.023 3.977 20 N -0.916 5.916 21 Si 0.963 3.037 22 H -0.281 1.281 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.141 3.859 26 N -0.294 5.294 27 N -0.257 5.257 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.433 0.567 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.029 0.971 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 -11.122 -24.033 27.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.013 4.013 3 C -0.190 4.190 4 C -0.194 4.194 5 C -0.111 4.111 6 C -0.105 4.105 7 C -0.166 4.166 8 C 0.051 3.949 9 N -0.296 5.296 10 C 0.401 3.599 11 O -0.462 6.462 12 N -0.366 5.366 13 C -0.019 4.019 14 C -0.147 4.147 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.594 4.594 18 H 0.088 0.912 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.788 3.212 22 H -0.207 1.207 23 H -0.208 1.208 24 H -0.186 1.186 25 C 0.017 3.983 26 N -0.140 5.140 27 N -0.096 5.096 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.275 0.725 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.224 0.776 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.502 -9.194 -23.547 26.670 hybrid contribution 0.604 0.063 1.044 1.208 sum -7.899 -9.131 -22.503 25.537 Atomic orbital electron populations 1.21879 0.91656 1.03315 1.02387 1.19547 0.96740 0.95050 0.89977 1.21719 1.00325 0.95158 1.01821 1.21942 1.00843 1.01389 0.95235 1.23394 0.96939 0.93835 0.96931 1.22573 0.95390 0.94112 0.98448 1.22324 0.98948 1.03374 0.91944 1.20363 0.94308 0.92407 0.87779 1.42316 1.65090 1.10623 1.11597 1.15817 0.79015 0.84889 0.80188 1.91027 1.59361 1.14223 1.81638 1.47967 1.68054 1.09819 1.10761 1.22599 1.00404 0.79538 0.99393 1.22762 0.98870 0.97745 0.95319 1.19722 0.84670 0.90845 0.85436 1.86089 1.52710 1.40161 1.60392 1.21837 0.99987 1.06390 1.31162 0.91222 1.25844 0.99250 0.95983 0.96674 1.69812 1.29889 1.13607 1.42228 0.85480 0.79363 0.78401 0.77954 1.20735 1.20789 1.18600 1.22432 0.96194 0.95576 0.84089 1.73606 1.15726 1.09434 1.15214 1.72993 1.07286 1.32727 0.96632 0.94581 0.89630 0.90505 0.94169 0.90228 0.94133 0.89803 0.89875 0.93368 0.78166 0.78220 0.72545 0.90456 0.87269 0.89632 0.88720 0.77611 0.92170 0.95251 0.95460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.41 71.98 0.61 -1.06 16 2 C -0.01 -0.18 0.88 -52.93 -0.05 -0.22 16 3 C -0.13 -2.64 7.82 71.98 0.56 -2.07 16 4 C -0.14 -1.25 8.09 71.98 0.58 -0.67 16 5 C 0.04 0.87 5.63 42.69 0.24 1.11 16 6 C -0.08 -1.13 9.20 22.49 0.21 -0.92 16 7 C -0.13 -2.26 10.07 22.64 0.23 -2.03 16 8 C 0.29 8.72 7.51 132.97 1.00 9.72 16 9 N -0.64 -19.00 5.35 -321.83 -1.72 -20.72 16 10 C 0.70 29.56 8.45 179.05 1.51 31.08 16 11 O -0.59 -31.64 14.96 -3.98 -0.06 -31.70 16 12 N -0.63 -25.84 3.32 -829.31 -2.76 -28.60 16 13 C 0.10 3.08 6.62 86.93 0.58 3.66 16 14 C -0.11 -3.94 6.24 32.07 0.20 -3.74 16 15 C 0.23 11.24 0.85 -10.35 -0.01 11.23 16 16 O -0.59 -29.38 13.07 -148.98 -1.95 -31.33 16 17 C -0.56 -29.19 8.13 25.60 0.21 -28.98 16 18 H 0.07 3.53 7.78 -2.91 -0.02 3.51 16 19 C 0.02 1.25 5.28 84.66 0.45 1.70 16 20 N -0.92 -51.17 10.96 21.45 0.24 -50.94 16 21 Si 0.96 42.85 29.54 68.60 2.03 44.88 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 25 C 0.14 7.18 5.23 86.73 0.45 7.63 16 26 N -0.29 -11.71 9.08 -54.93 -0.50 -12.21 16 27 N -0.26 -8.85 10.20 -47.58 -0.49 -9.34 16 28 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 1.01 7.87 -2.39 -0.02 0.99 16 34 H 0.08 0.35 6.76 -2.39 -0.02 0.34 16 35 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 37 H 0.20 0.84 6.82 -2.91 -0.02 0.82 16 38 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.43 8.15 7.17 -92.70 -0.66 7.49 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.11 2.16 7.22 -2.39 -0.02 2.14 16 42 H 0.09 2.95 8.04 -2.39 -0.02 2.94 16 43 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.37 19.89 7.45 -74.06 -0.55 19.34 16 45 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.03 1.67 7.81 -2.39 -0.02 1.65 16 47 H 0.03 1.56 7.92 -2.38 -0.02 1.54 16 Total: -1.00 -82.96 380.66 1.34 -81.62 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.22 Total: 31.91 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 6.77 Total: 26.43 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -5.23 Total: -121.80 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -2.01 Total: -63.03 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -82.96 1.34 -81.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434703723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.448 kcal (2) G-P(sol) polarization free energy of solvation -82.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds