Wall clock time and date at job start Tue Mar 31 2020 17:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47317 * 2 1 4 4 C 1.52994 * 109.46937 * 239.99591 * 2 1 3 5 5 C 1.50700 * 109.46709 * 120.00003 * 2 1 3 6 6 C 1.38779 * 120.00484 * 74.97887 * 5 2 1 7 7 C 1.38603 * 118.03526 * 180.02562 * 6 5 2 8 8 C 1.39391 * 117.91198 * 0.02562 * 7 6 5 9 9 N 1.39429 * 120.15289 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00461 * 174.91315 * 9 8 7 11 11 O 1.21578 * 119.99563 * 5.08457 * 10 9 8 12 12 N 1.34776 * 120.00285 * 185.08681 * 10 9 8 13 13 C 1.47426 * 125.64651 * 0.02562 * 12 10 9 14 14 C 1.54910 * 104.83163 * 204.09384 * 13 12 10 15 15 C 1.55156 * 101.58255 * 322.99464 * 14 13 12 16 16 O 1.42903 * 110.72120 * 277.13992 * 15 14 13 17 17 C 1.50705 * 110.72194 * 154.04167 * 15 14 13 18 18 H 1.07995 * 119.99726 * 0.02562 * 17 15 14 19 19 C 1.37873 * 120.00031 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00303 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99905 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47046 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47332 * 120.00311 * 21 19 17 24 24 H 1.48504 * 109.46926 * 240.00229 * 21 19 17 25 25 C 1.47020 * 125.64578 * 179.71750 * 12 10 9 26 26 N 1.32439 * 119.70104 * 359.97438 * 8 7 6 27 27 N 1.28347 * 122.08117 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.46809 * 300.00395 * 1 2 3 29 29 H 1.08997 * 109.46883 * 59.99746 * 1 2 3 30 30 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47406 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47351 * 299.99967 * 3 2 1 33 33 H 1.09004 * 109.47504 * 60.00030 * 3 2 1 34 34 H 1.08997 * 109.47592 * 300.00499 * 4 2 1 35 35 H 1.08997 * 109.47166 * 60.00218 * 4 2 1 36 36 H 1.09006 * 109.47223 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.98016 * 0.02562 * 6 5 2 38 38 H 1.08005 * 121.04664 * 180.02562 * 7 6 5 39 39 H 0.97000 * 119.99898 * 354.90451 * 9 8 7 40 40 H 1.08994 * 110.36995 * 322.93391 * 13 12 10 41 41 H 1.09003 * 110.36344 * 85.25661 * 13 12 10 42 42 H 1.08995 * 111.00383 * 81.06827 * 14 13 12 43 43 H 1.09000 * 111.00298 * 204.88513 * 14 13 12 44 44 H 0.96699 * 114.00039 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00047 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88096 * 298.38810 * 25 12 10 47 47 H 1.08994 * 109.88509 * 59.55789 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9699 -2.0947 1.3067 7 6 2.4427 -2.7058 2.4574 8 6 2.9512 -1.8906 3.4673 9 7 3.4386 -2.4560 4.6449 10 6 4.0229 -1.6758 5.5757 11 8 4.0428 -0.4688 5.4315 12 7 4.5852 -2.2336 6.6661 13 6 4.6330 -3.6764 6.9654 14 6 4.7835 -3.7572 8.5050 15 6 5.7148 -2.5496 8.7909 16 8 7.0825 -2.9041 8.5770 17 6 5.5113 -2.0398 10.1944 18 1 4.7907 -2.5161 10.8427 19 6 6.2458 -0.9661 10.6511 20 7 7.1237 -0.3865 9.8619 21 14 5.9941 -0.3347 12.3911 22 1 4.9577 -1.1536 13.0697 23 1 7.2712 -0.4317 13.1425 24 1 5.5536 1.0827 12.3444 25 6 5.2581 -1.5044 7.7511 26 7 2.9693 -0.5766 3.3032 27 7 2.5300 -0.0169 2.2350 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1391 36 1 3.1300 -0.7217 -1.2490 37 1 1.5649 -2.6786 0.4933 38 1 2.4178 -3.7799 2.5681 39 1 3.3571 -3.4110 4.7944 40 1 3.7093 -4.1603 6.6486 41 1 5.4910 -4.1371 6.4756 42 1 3.8198 -3.6329 8.9988 43 1 5.2548 -4.6938 8.8028 44 1 7.7060 -2.1837 8.7425 45 1 7.6406 0.3687 10.1833 46 1 6.1217 -0.9683 7.3575 47 1 4.5632 -0.8035 8.2134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434703726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:28 Heat of formation + Delta-G solvation = -9.967056 kcal Electronic energy + Delta-G solvation = -28941.058218 eV Core-core repulsion = 24931.890942 eV Total energy + Delta-G solvation = -4009.167276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37305 -39.79075 -37.82022 -36.99809 -34.87070 -34.34635 -32.87013 -32.18394 -30.73486 -29.64193 -27.90255 -27.66247 -27.51544 -25.42585 -24.63261 -23.99363 -22.60704 -20.23729 -19.99199 -19.56545 -18.34418 -17.42564 -17.20871 -16.70115 -16.11531 -15.75813 -15.26000 -14.92483 -14.61463 -14.42214 -14.29640 -14.23068 -14.03597 -13.54910 -13.34328 -12.97763 -12.89523 -12.59804 -12.51098 -12.31912 -11.97768 -11.85407 -11.72861 -11.58548 -11.32202 -11.19019 -11.09534 -10.95681 -10.90826 -10.78477 -10.71384 -10.49138 -10.24242 -10.18130 -9.77849 -9.38844 -9.22029 -8.69330 -8.62300 -8.35566 -7.88368 -6.31197 -4.39982 0.78551 0.97881 2.56546 3.20089 3.29044 3.31955 3.37191 3.82393 3.88196 4.09884 4.26127 4.32910 4.42900 4.60882 4.71808 4.74733 4.85112 4.96207 5.05652 5.25597 5.29400 5.32700 5.44673 5.48366 5.55382 5.59347 5.68250 5.72463 5.73785 5.76540 5.86580 5.94042 6.01463 6.04590 6.05096 6.27819 6.43480 6.52058 6.63618 6.80952 6.86787 7.09234 7.25814 7.42200 7.71836 7.97312 8.25291 8.63181 8.82835 9.02350 9.28896 9.40639 10.76732 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.002390 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.414236 B =11714.193136 C =12335.777891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.133 4.133 4 C -0.141 4.141 5 C 0.035 3.965 6 C -0.087 4.087 7 C -0.159 4.159 8 C 0.321 3.679 9 N -0.664 5.664 10 C 0.701 3.299 11 O -0.530 6.530 12 N -0.624 5.624 13 C 0.099 3.901 14 C -0.116 4.116 15 C 0.249 3.751 16 O -0.587 6.587 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.119 3.881 26 N -0.224 5.224 27 N -0.204 5.204 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.411 0.589 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.387 0.613 45 H 0.271 0.729 46 H 0.065 0.935 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 -6.843 -19.587 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.011 4.011 3 C -0.191 4.191 4 C -0.199 4.199 5 C -0.112 4.112 6 C -0.116 4.116 7 C -0.192 4.192 8 C 0.082 3.918 9 N -0.314 5.314 10 C 0.402 3.598 11 O -0.400 6.400 12 N -0.362 5.362 13 C -0.024 4.024 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.397 6.397 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.003 4.003 26 N -0.072 5.072 27 N -0.047 5.047 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.248 0.752 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.239 0.761 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.969 -4.846 -19.083 22.538 hybrid contribution -0.201 -1.153 0.580 1.306 sum -11.170 -5.999 -18.503 22.430 Atomic orbital electron populations 1.21885 0.93139 1.02024 1.02527 1.19355 0.95704 0.96017 0.90051 1.21733 1.01539 0.93730 1.02052 1.21947 1.01529 1.00087 0.96350 1.22684 0.99104 0.92007 0.97425 1.21984 0.96916 0.95141 0.97551 1.21810 1.02279 1.01424 0.93645 1.20016 0.92697 0.92275 0.86792 1.42798 1.60439 1.11595 1.16533 1.15608 0.79449 0.85184 0.79512 1.91063 1.61586 1.11200 1.76183 1.48039 1.58423 1.08405 1.21309 1.22327 0.99652 0.81851 0.98606 1.22734 1.00262 1.00345 0.92025 1.19493 0.80166 0.87872 0.91609 1.86065 1.17794 1.43899 1.91954 1.21532 1.23197 1.15221 0.97610 0.91385 1.25086 0.94335 0.95554 0.98332 1.69575 1.24334 1.23253 1.36181 0.86326 0.78202 0.78752 0.83504 1.19590 1.20721 1.20691 1.23021 0.95983 0.96196 0.85063 1.73835 1.13341 1.06685 1.13358 1.73090 1.04572 1.31246 0.95764 0.92173 0.91673 0.92542 0.92323 0.92640 0.91328 0.92360 0.91611 0.92271 0.83360 0.83352 0.75174 0.92654 0.91652 0.90445 0.90387 0.76075 0.91859 0.91693 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.41 37.16 0.31 -0.70 16 2 C -0.01 -0.08 0.88 -155.67 -0.14 -0.22 16 3 C -0.13 -1.30 7.82 37.15 0.29 -1.01 16 4 C -0.14 -0.93 8.09 37.15 0.30 -0.63 16 5 C 0.04 0.42 5.63 -82.39 -0.46 -0.04 16 6 C -0.09 -0.82 9.20 -39.25 -0.36 -1.18 16 7 C -0.16 -1.65 10.06 -39.02 -0.39 -2.04 16 8 C 0.32 4.93 7.51 -154.47 -1.16 3.77 16 9 N -0.66 -10.18 5.35 -15.70 -0.08 -10.26 16 10 C 0.70 14.39 8.45 -86.92 -0.73 13.66 16 11 O -0.53 -13.25 14.96 5.30 0.08 -13.17 16 12 N -0.62 -12.67 3.33 -176.23 -0.59 -13.25 16 13 C 0.10 1.62 6.61 -2.53 -0.02 1.60 16 14 C -0.12 -2.20 6.23 -24.58 -0.15 -2.35 16 15 C 0.25 5.91 0.86 -89.93 -0.08 5.83 16 16 O -0.59 -14.59 13.07 -35.23 -0.46 -15.05 16 17 C -0.54 -13.83 8.12 -34.44 -0.28 -14.11 16 18 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 19 C 0.07 1.82 5.28 -17.82 -0.09 1.72 16 20 N -0.89 -23.76 10.97 55.43 0.61 -23.15 16 21 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.12 2.87 5.54 -3.06 -0.02 2.86 16 26 N -0.22 -4.24 9.08 31.28 0.28 -3.95 16 27 N -0.20 -3.36 10.20 33.61 0.34 -3.01 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 34 H 0.06 0.30 6.76 -51.93 -0.35 -0.05 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.15 0.84 6.81 -52.49 -0.36 0.49 16 38 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.41 4.59 7.17 -40.82 -0.29 4.30 16 40 H 0.06 0.68 7.22 -51.93 -0.38 0.31 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 10.01 6.98 45.56 0.32 10.32 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.06 1.73 8.07 -51.93 -0.42 1.31 16 47 H 0.07 1.76 7.82 -51.93 -0.41 1.35 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -33.03 380.60 -8.56 -41.59 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.48 Total: 12.00 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -2.98 Total: 7.15 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.57 Total: -53.63 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.38 Total: -28.22 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.03 -8.56 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434703726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.627 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds