Wall clock time and date at job start Tue Mar 31 2020 17:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47317 * 2 1 4 4 C 1.52994 * 109.46937 * 239.99591 * 2 1 3 5 5 C 1.50700 * 109.46709 * 120.00003 * 2 1 3 6 6 C 1.38779 * 120.00484 * 74.97887 * 5 2 1 7 7 C 1.38603 * 118.03526 * 180.02562 * 6 5 2 8 8 C 1.39391 * 117.91198 * 0.02562 * 7 6 5 9 9 N 1.39429 * 120.15289 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00461 * 174.91315 * 9 8 7 11 11 O 1.21578 * 119.99563 * 5.08457 * 10 9 8 12 12 N 1.34776 * 120.00285 * 185.08681 * 10 9 8 13 13 C 1.47426 * 125.64651 * 0.02562 * 12 10 9 14 14 C 1.54910 * 104.83163 * 204.09384 * 13 12 10 15 15 C 1.55156 * 101.58255 * 322.99464 * 14 13 12 16 16 O 1.42903 * 110.72120 * 277.13992 * 15 14 13 17 17 C 1.50705 * 110.72194 * 154.04167 * 15 14 13 18 18 H 1.07995 * 119.99726 * 0.02562 * 17 15 14 19 19 C 1.37873 * 120.00031 * 179.97438 * 17 15 14 20 20 N 1.31514 * 120.00303 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99905 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47046 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47332 * 120.00311 * 21 19 17 24 24 H 1.48504 * 109.46926 * 240.00229 * 21 19 17 25 25 C 1.47020 * 125.64578 * 179.71750 * 12 10 9 26 26 N 1.32439 * 119.70104 * 359.97438 * 8 7 6 27 27 N 1.28347 * 122.08117 * 0.02562 * 26 8 7 28 28 H 1.09004 * 109.46809 * 300.00395 * 1 2 3 29 29 H 1.08997 * 109.46883 * 59.99746 * 1 2 3 30 30 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47406 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47351 * 299.99967 * 3 2 1 33 33 H 1.09004 * 109.47504 * 60.00030 * 3 2 1 34 34 H 1.08997 * 109.47592 * 300.00499 * 4 2 1 35 35 H 1.08997 * 109.47166 * 60.00218 * 4 2 1 36 36 H 1.09006 * 109.47223 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.98016 * 0.02562 * 6 5 2 38 38 H 1.08005 * 121.04664 * 180.02562 * 7 6 5 39 39 H 0.97000 * 119.99898 * 354.90451 * 9 8 7 40 40 H 1.08994 * 110.36995 * 322.93391 * 13 12 10 41 41 H 1.09003 * 110.36344 * 85.25661 * 13 12 10 42 42 H 1.08995 * 111.00383 * 81.06827 * 14 13 12 43 43 H 1.09000 * 111.00298 * 204.88513 * 14 13 12 44 44 H 0.96699 * 114.00039 * 180.02562 * 16 15 14 45 45 H 0.96997 * 120.00047 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.88096 * 298.38810 * 25 12 10 47 47 H 1.08994 * 109.88509 * 59.55789 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9699 -2.0947 1.3067 7 6 2.4427 -2.7058 2.4574 8 6 2.9512 -1.8906 3.4673 9 7 3.4386 -2.4560 4.6449 10 6 4.0229 -1.6758 5.5757 11 8 4.0428 -0.4688 5.4315 12 7 4.5852 -2.2336 6.6661 13 6 4.6330 -3.6764 6.9654 14 6 4.7835 -3.7572 8.5050 15 6 5.7148 -2.5496 8.7909 16 8 7.0825 -2.9041 8.5770 17 6 5.5113 -2.0398 10.1944 18 1 4.7907 -2.5161 10.8427 19 6 6.2458 -0.9661 10.6511 20 7 7.1237 -0.3865 9.8619 21 14 5.9941 -0.3347 12.3911 22 1 4.9577 -1.1536 13.0697 23 1 7.2712 -0.4317 13.1425 24 1 5.5536 1.0827 12.3444 25 6 5.2581 -1.5044 7.7511 26 7 2.9693 -0.5766 3.3032 27 7 2.5300 -0.0169 2.2350 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1391 36 1 3.1300 -0.7217 -1.2490 37 1 1.5649 -2.6786 0.4933 38 1 2.4178 -3.7799 2.5681 39 1 3.3571 -3.4110 4.7944 40 1 3.7093 -4.1603 6.6486 41 1 5.4910 -4.1371 6.4756 42 1 3.8198 -3.6329 8.9988 43 1 5.2548 -4.6938 8.8028 44 1 7.7060 -2.1837 8.7425 45 1 7.6406 0.3687 10.1833 46 1 6.1217 -0.9683 7.3575 47 1 4.5632 -0.8035 8.2134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434703726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:27 Heat of formation + Delta-G solvation = -34.233870 kcal Electronic energy + Delta-G solvation = -28942.110506 eV Core-core repulsion = 24931.890942 eV Total energy + Delta-G solvation = -4010.219564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43786 -41.24491 -39.33109 -38.01684 -36.23508 -36.07011 -34.18426 -33.80083 -32.12818 -30.98375 -29.61194 -28.38902 -28.10158 -27.18514 -25.60773 -25.25222 -24.04023 -21.55499 -21.36822 -20.81604 -19.65283 -19.08658 -18.76148 -17.80715 -17.29072 -17.03016 -16.86607 -16.26007 -16.15359 -16.02642 -15.22487 -15.07184 -14.92558 -14.79877 -14.74900 -14.63625 -14.23742 -13.94709 -13.50606 -13.39521 -13.22183 -13.10939 -12.89978 -12.82340 -12.55830 -12.52510 -12.42731 -12.30539 -12.26275 -12.11129 -11.87314 -11.82636 -11.78277 -11.24757 -11.17825 -11.08324 -10.66658 -10.36051 -10.27509 -9.92612 -9.44263 -8.29037 -6.44806 -0.07900 0.00879 1.22990 1.39689 1.42489 1.53013 1.97764 2.35705 2.64478 2.69603 2.97782 3.13167 3.50355 3.67272 3.69921 3.77406 4.03077 4.06118 4.08818 4.13661 4.16504 4.32032 4.37926 4.54160 4.57993 4.67337 4.74824 4.81726 4.90741 4.92971 4.97371 5.00285 5.05644 5.06860 5.10894 5.17989 5.20535 5.29376 5.34627 5.44689 5.45741 5.49099 5.50867 5.74014 5.87003 6.03699 6.62077 6.80762 7.27276 7.36007 7.36556 7.94135 8.77344 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.002390 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.414236 B =11714.193136 C =12335.777891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.011 4.011 3 C -0.133 4.133 4 C -0.137 4.137 5 C 0.039 3.961 6 C -0.077 4.077 7 C -0.135 4.135 8 C 0.291 3.709 9 N -0.643 5.643 10 C 0.700 3.300 11 O -0.587 6.587 12 N -0.627 5.627 13 C 0.102 3.898 14 C -0.110 4.110 15 C 0.234 3.766 16 O -0.589 6.589 17 C -0.554 4.554 18 H 0.071 0.929 19 C 0.022 3.978 20 N -0.918 5.918 21 Si 0.964 3.036 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.287 1.287 25 C 0.137 3.863 26 N -0.294 5.294 27 N -0.256 5.256 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.433 0.567 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.378 0.622 45 H 0.271 0.729 46 H 0.025 0.975 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.651 -10.602 -21.980 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.013 4.013 3 C -0.190 4.190 4 C -0.195 4.195 5 C -0.111 4.111 6 C -0.105 4.105 7 C -0.166 4.166 8 C 0.051 3.949 9 N -0.296 5.296 10 C 0.401 3.599 11 O -0.462 6.462 12 N -0.365 5.365 13 C -0.019 4.019 14 C -0.147 4.147 15 C 0.193 3.807 16 O -0.398 6.398 17 C -0.592 4.592 18 H 0.089 0.911 19 C -0.178 4.178 20 N -0.558 5.558 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.213 1.213 25 C 0.013 3.987 26 N -0.140 5.140 27 N -0.096 5.096 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.275 0.725 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.229 0.771 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.325 -8.663 -21.507 26.743 hybrid contribution 0.458 0.042 1.161 1.249 sum -12.867 -8.620 -20.346 25.570 Atomic orbital electron populations 1.21874 0.91535 1.03343 1.02425 1.19545 0.96831 0.95009 0.89927 1.21721 1.00257 0.95192 1.01867 1.21943 1.00785 1.01423 0.95306 1.23395 0.96874 0.93845 0.96972 1.22572 0.95377 0.94123 0.98452 1.22322 0.99252 1.03328 0.91690 1.20357 0.94341 0.92361 0.87798 1.42313 1.59678 1.11992 1.15638 1.15813 0.79240 0.84873 0.79962 1.91025 1.63629 1.14079 1.77515 1.47932 1.58103 1.09821 1.20622 1.22551 1.02974 0.79527 0.96863 1.22731 0.99280 0.98666 0.94065 1.19725 0.80288 0.90131 0.90537 1.86051 1.18329 1.43449 1.91947 1.21891 1.23139 1.15432 0.98774 0.91116 1.25856 0.94271 0.95895 1.01772 1.69688 1.25034 1.23519 1.37588 0.85402 0.78346 0.77751 0.79526 1.18618 1.20190 1.21278 1.22493 0.93846 0.96076 0.86284 1.73603 1.15660 1.09377 1.15327 1.72991 1.07163 1.32728 0.96749 0.94464 0.89664 0.90471 0.94307 0.90214 0.94039 0.89780 0.89853 0.93496 0.78170 0.78225 0.72543 0.87229 0.90554 0.89653 0.88715 0.77108 0.92003 0.95661 0.95071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.41 71.98 0.61 -1.00 16 2 C -0.01 -0.18 0.88 -52.93 -0.05 -0.22 16 3 C -0.13 -2.64 7.82 71.98 0.56 -2.08 16 4 C -0.14 -1.28 8.09 71.98 0.58 -0.70 16 5 C 0.04 0.87 5.63 42.69 0.24 1.11 16 6 C -0.08 -1.13 9.20 22.49 0.21 -0.92 16 7 C -0.13 -2.25 10.06 22.63 0.23 -2.03 16 8 C 0.29 8.70 7.51 132.97 1.00 9.70 16 9 N -0.64 -18.96 5.35 -321.84 -1.72 -20.68 16 10 C 0.70 29.51 8.45 179.05 1.51 31.02 16 11 O -0.59 -31.52 14.96 -3.96 -0.06 -31.58 16 12 N -0.63 -25.78 3.33 -829.74 -2.76 -28.54 16 13 C 0.10 3.10 6.61 86.86 0.57 3.67 16 14 C -0.11 -3.97 6.23 31.99 0.20 -3.77 16 15 C 0.23 11.29 0.86 -10.34 -0.01 11.28 16 16 O -0.59 -29.92 13.07 -148.98 -1.95 -31.87 16 17 C -0.55 -29.06 8.12 25.60 0.21 -28.85 16 18 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 19 C 0.02 1.20 5.28 84.65 0.45 1.64 16 20 N -0.92 -51.03 10.97 21.45 0.24 -50.79 16 21 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 25 C 0.14 6.97 5.54 86.74 0.48 7.45 16 26 N -0.29 -11.67 9.08 -54.94 -0.50 -12.17 16 27 N -0.26 -8.83 10.20 -47.57 -0.49 -9.31 16 28 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.61 8.11 -2.39 -0.02 0.59 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 1.03 7.87 -2.38 -0.02 1.01 16 34 H 0.08 0.37 6.76 -2.39 -0.02 0.35 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.20 0.83 6.81 -2.91 -0.02 0.81 16 38 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.43 8.14 7.17 -92.71 -0.66 7.48 16 40 H 0.11 2.17 7.22 -2.39 -0.02 2.15 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.94 8.03 -2.39 -0.02 2.92 16 43 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.38 20.46 6.98 -74.06 -0.52 19.94 16 45 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.02 1.44 8.07 -2.39 -0.02 1.43 16 47 H 0.03 1.76 7.82 -2.39 -0.02 1.74 16 Total: -1.00 -82.72 380.60 1.40 -81.32 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.18 Total: 32.63 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.79 Total: 26.31 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -5.23 Total: -121.50 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -2.01 Total: -63.45 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -82.72 1.40 -81.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434703726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.083 kcal (2) G-P(sol) polarization free energy of solvation -82.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds