Wall clock time and date at job start Tue Mar 31 2020 18:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28091 * 119.15727 * 2 1 4 4 C 1.31199 * 122.95712 * 179.40504 * 3 2 1 5 5 C 1.39827 * 119.66598 * 359.07863 * 4 3 2 6 6 C 1.36832 * 118.75947 * 1.41339 * 5 4 3 7 7 C 1.34694 * 119.15569 * 179.74011 * 2 1 3 8 8 O 1.22064 * 120.51731 * 1.26956 * 7 2 1 9 9 C 1.50513 * 122.51049 * 181.99075 * 5 4 3 10 10 N 1.46788 * 109.45646 * 347.68425 * 9 5 4 11 11 C 1.34781 * 121.25533 * 224.64899 * 10 9 5 12 12 O 1.21580 * 119.99778 * 174.78804 * 11 10 9 13 13 N 1.34772 * 119.99666 * 354.79519 * 11 10 9 14 14 C 1.46498 * 119.99642 * 184.96740 * 13 11 10 15 15 C 1.53004 * 109.47270 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47184 * 299.99888 * 15 14 13 17 17 C 1.52998 * 109.46963 * 60.00017 * 15 14 13 18 18 C 1.50698 * 109.47180 * 179.97438 * 15 14 13 19 19 H 1.08005 * 120.00499 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00371 * 179.97438 * 18 15 14 21 21 N 1.31522 * 119.99263 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00420 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47168 * 90.00143 * 22 20 18 24 24 H 1.48500 * 109.46661 * 210.00239 * 22 20 18 25 25 H 1.48497 * 109.47029 * 329.99849 * 22 20 18 26 26 C 1.47164 * 117.48884 * 44.63713 * 10 9 5 27 27 C 1.50628 * 118.00605 * 178.45950 * 4 3 2 28 28 H 1.09003 * 109.47100 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47953 * 119.99812 * 1 2 3 30 30 H 1.09005 * 109.46835 * 239.99690 * 1 2 3 31 31 H 1.07998 * 121.02565 * 179.32085 * 6 5 4 32 32 H 1.08994 * 109.47415 * 107.68290 * 9 5 4 33 33 H 1.09001 * 109.46877 * 227.68925 * 9 5 4 34 34 H 0.96996 * 120.00454 * 4.96303 * 13 11 10 35 35 H 1.09002 * 109.47377 * 299.99781 * 14 13 11 36 36 H 1.09000 * 109.47589 * 59.99846 * 14 13 11 37 37 H 1.09002 * 109.46777 * 59.99560 * 16 15 14 38 38 H 1.08994 * 109.47610 * 179.97438 * 16 15 14 39 39 H 1.09002 * 109.47086 * 300.00327 * 16 15 14 40 40 H 1.09002 * 109.47151 * 60.00404 * 17 15 14 41 41 H 1.08997 * 109.47171 * 180.02562 * 17 15 14 42 42 H 1.08996 * 109.46826 * 299.99967 * 17 15 14 43 43 H 0.96996 * 119.99426 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.71453 * 55.13136 * 26 10 9 45 45 H 1.08997 * 109.71124 * 175.72093 * 26 10 9 46 46 H 1.09000 * 109.22186 * 279.99208 * 27 4 3 47 47 H 1.08999 * 109.22361 * 39.34770 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.0890 1.1186 0.0000 4 6 3.3980 1.2056 0.0114 5 6 4.1689 0.0394 0.0439 6 6 3.5317 -1.1714 0.0334 7 6 2.1211 -1.1763 0.0053 8 8 1.5050 -2.2298 -0.0132 9 6 5.6726 0.0651 0.1027 10 7 6.1497 1.4248 -0.1767 11 6 7.1853 1.6450 -1.0108 12 8 7.5014 2.7827 -1.3003 13 7 7.8703 0.6039 -1.5239 14 6 9.0616 0.8430 -2.3423 15 6 9.6462 -0.4963 -2.7957 16 6 10.0284 -1.3273 -1.5693 17 6 8.6043 -1.2543 -3.6209 18 6 10.8713 -0.2504 -3.6381 19 1 11.2005 0.7601 -3.8305 20 6 11.5727 -1.3154 -4.1624 21 7 11.1722 -2.5459 -3.9276 22 14 13.0918 -1.0105 -5.2059 23 1 14.2922 -0.9702 -4.3328 24 1 13.2381 -2.1053 -6.1985 25 1 12.9523 0.2862 -5.9161 26 6 5.4545 2.5386 0.4880 27 6 4.0160 2.5788 -0.0257 28 1 -0.3633 1.0277 0.0005 29 1 -0.3635 -0.5138 -0.8900 30 1 -0.3633 -0.5139 0.8900 31 1 4.0912 -2.0951 0.0465 32 1 6.0027 -0.2389 1.0960 33 1 6.0770 -0.6219 -0.6407 34 1 7.5746 -0.3036 -1.3514 35 1 8.7895 1.4354 -3.2159 36 1 9.8041 1.3826 -1.7544 37 1 9.1420 -1.5052 -0.9603 38 1 10.4444 -2.2816 -1.8922 39 1 10.7706 -0.7873 -0.9814 40 1 8.3321 -0.6623 -4.4947 41 1 9.0205 -2.2086 -3.9435 42 1 7.7180 -1.4322 -3.0119 43 1 11.6659 -3.2952 -4.2961 44 1 5.4555 2.3814 1.5666 45 1 5.9558 3.4775 0.2530 46 1 4.0114 2.9468 -1.0517 47 1 3.4304 3.2529 0.5994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434808774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:08 Heat of formation + Delta-G solvation = 10.372090 kcal Electronic energy + Delta-G solvation = -29365.944516 eV Core-core repulsion = 25357.659211 eV Total energy + Delta-G solvation = -4008.285304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.40767 -40.18876 -38.29884 -37.26341 -36.34406 -34.31029 -33.79721 -32.93119 -31.07312 -30.11428 -28.96750 -26.35844 -25.75841 -25.64816 -25.21403 -24.49890 -23.25613 -22.03061 -19.87747 -19.09856 -18.76032 -17.74253 -17.32165 -17.07757 -16.51163 -16.02296 -15.75153 -15.48499 -14.86604 -14.63617 -14.57260 -14.09526 -13.94681 -13.72797 -13.61470 -13.45752 -13.21615 -12.99298 -12.94018 -12.74520 -12.59425 -12.23629 -12.18945 -11.61889 -11.42382 -11.28973 -11.21061 -10.88913 -10.70716 -10.41844 -10.32345 -10.22341 -10.12159 -9.84084 -9.66523 -9.34449 -8.93361 -8.82075 -8.63551 -8.43804 -8.26637 -6.03986 -4.13936 0.15901 1.26976 1.94289 2.65906 3.04286 3.27520 3.34783 3.38685 3.42097 3.71014 4.03981 4.11834 4.19617 4.39218 4.41776 4.77122 4.84255 4.89264 4.92684 4.97800 5.15573 5.18450 5.23073 5.26122 5.27063 5.40861 5.60672 5.63529 5.74672 5.85559 6.11297 6.32204 6.33534 6.46334 6.74108 6.77914 6.84628 6.99601 7.00820 7.11151 7.33601 7.34300 7.53024 7.67986 7.85606 7.98486 8.08956 8.25912 8.37166 8.83706 8.89509 9.52056 10.97515 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002693 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.914171 B =10394.474179 C =11414.657386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.344 5.344 3 N -0.228 5.228 4 C 0.081 3.919 5 C -0.037 4.037 6 C -0.191 4.191 7 C 0.477 3.523 8 O -0.535 6.535 9 C 0.148 3.852 10 N -0.639 5.639 11 C 0.707 3.293 12 O -0.589 6.589 13 N -0.732 5.732 14 C 0.148 3.852 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.505 4.505 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.132 3.868 27 C -0.068 4.068 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.392 0.608 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.004 0.996 38 H 0.085 0.915 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.086 0.914 42 H 0.003 0.997 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.944 5.776 11.353 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.164 5.164 3 N -0.053 5.053 4 C -0.089 4.089 5 C -0.044 4.044 6 C -0.221 4.221 7 C 0.276 3.724 8 O -0.414 6.414 9 C 0.023 3.977 10 N -0.378 5.378 11 C 0.409 3.591 12 O -0.467 6.467 13 N -0.387 5.387 14 C 0.026 3.974 15 C 0.055 3.945 16 C -0.188 4.188 17 C -0.187 4.187 18 C -0.544 4.544 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C 0.008 3.992 27 C -0.109 4.109 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.185 0.815 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.229 0.771 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.023 0.977 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.104 0.896 42 H 0.022 0.978 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.128 0.872 46 H 0.111 0.889 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.798 6.279 11.030 22.682 hybrid contribution 1.137 -1.109 -0.509 1.668 sum -17.661 5.170 10.521 21.197 Atomic orbital electron populations 1.22125 0.74066 1.04942 1.04391 1.46580 1.09570 1.02766 1.57445 1.70922 1.11736 1.12063 1.10535 1.21480 0.87222 0.96837 1.03363 1.20966 0.98018 0.92898 0.92531 1.22649 0.93137 0.99682 1.06678 1.17950 0.89712 0.84087 0.80636 1.90995 1.69493 1.29044 1.51916 1.20474 0.88044 0.85766 1.03384 1.47248 1.34844 1.06128 1.49540 1.15865 0.79150 0.85505 0.78624 1.90890 1.70335 1.21191 1.64297 1.45688 1.30600 1.07420 1.55029 1.21639 0.83179 1.00147 0.92462 1.18363 0.93979 0.88886 0.93223 1.21827 0.97227 1.03407 0.96308 1.21824 0.95472 1.03418 0.98033 1.20973 1.09519 0.92996 1.30914 0.92369 1.24880 0.97436 0.95097 0.96097 1.69802 1.39564 0.97942 1.45153 0.86567 0.83208 0.77913 0.80166 1.20711 1.21293 1.19890 1.21432 0.89900 0.91726 0.96106 1.20622 0.95762 0.90106 1.04366 0.88253 0.89601 0.89673 0.81467 0.88528 0.87866 0.77083 0.92738 0.92796 0.97696 0.89591 0.95360 0.95389 0.89579 0.97789 0.92994 0.90794 0.87224 0.88873 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.23 59.84 0.61 1.22 16 2 N -0.34 -3.62 3.61 -70.17 -0.25 -3.87 16 3 N -0.23 -2.31 10.69 33.70 0.36 -1.95 16 4 C 0.08 0.79 6.72 -82.30 -0.55 0.24 16 5 C -0.04 -0.37 5.81 -104.63 -0.61 -0.97 16 6 C -0.19 -2.01 9.75 -39.01 -0.38 -2.39 16 7 C 0.48 5.95 7.48 -15.22 -0.11 5.84 16 8 O -0.54 -8.20 17.11 4.86 0.08 -8.12 16 9 C 0.15 1.39 6.11 -5.13 -0.03 1.36 16 10 N -0.64 -7.54 2.94 -180.27 -0.53 -8.07 16 11 C 0.71 11.57 8.32 -86.92 -0.72 10.84 16 12 O -0.59 -11.71 15.84 5.30 0.08 -11.62 16 13 N -0.73 -12.37 4.86 -65.22 -0.32 -12.69 16 14 C 0.15 3.04 4.51 -4.04 -0.02 3.03 16 15 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 16 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 17 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 18 C -0.51 -12.94 8.01 -34.44 -0.28 -13.22 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.89 -23.22 9.36 55.43 0.52 -22.70 16 22 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.13 1.21 6.40 -3.78 -0.02 1.18 16 27 C -0.07 -0.55 6.12 -28.02 -0.17 -0.73 16 28 H 0.10 0.49 8.05 -51.93 -0.42 0.07 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.99 5.96 -51.93 -0.31 0.68 16 34 H 0.39 5.94 3.81 -40.82 -0.16 5.78 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 38 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 42 H 0.00 0.06 6.86 -51.93 -0.36 -0.30 16 43 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.11 1.12 7.08 -51.93 -0.37 0.75 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -32.01 372.83 -8.10 -40.11 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.79 Total: 3.74 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -1.86 Total: 4.13 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.22 Total: -49.29 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.17 Total: -19.74 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.01 -8.10 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434808774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.486 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds