Wall clock time and date at job start Tue Mar 31 2020 18:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.28091 * 119.15727 * 2 1 4 4 C 1.31199 * 122.95712 * 179.40504 * 3 2 1 5 5 C 1.39827 * 119.66598 * 359.07863 * 4 3 2 6 6 C 1.36832 * 118.75947 * 1.41339 * 5 4 3 7 7 C 1.34694 * 119.15569 * 179.74011 * 2 1 3 8 8 O 1.22064 * 120.51731 * 1.26956 * 7 2 1 9 9 C 1.50513 * 122.51049 * 181.99075 * 5 4 3 10 10 N 1.46788 * 109.45646 * 347.68425 * 9 5 4 11 11 C 1.34781 * 121.25533 * 224.64899 * 10 9 5 12 12 O 1.21580 * 119.99778 * 174.78804 * 11 10 9 13 13 N 1.34772 * 119.99666 * 354.79519 * 11 10 9 14 14 C 1.46498 * 119.99642 * 184.96740 * 13 11 10 15 15 C 1.53004 * 109.47270 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47184 * 299.99888 * 15 14 13 17 17 C 1.52998 * 109.46963 * 60.00017 * 15 14 13 18 18 C 1.50698 * 109.47180 * 179.97438 * 15 14 13 19 19 H 1.08005 * 120.00499 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00371 * 179.97438 * 18 15 14 21 21 N 1.31522 * 119.99263 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00420 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47168 * 90.00143 * 22 20 18 24 24 H 1.48500 * 109.46661 * 210.00239 * 22 20 18 25 25 H 1.48497 * 109.47029 * 329.99849 * 22 20 18 26 26 C 1.47164 * 117.48884 * 44.63713 * 10 9 5 27 27 C 1.50628 * 118.00605 * 178.45950 * 4 3 2 28 28 H 1.09003 * 109.47100 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47953 * 119.99812 * 1 2 3 30 30 H 1.09005 * 109.46835 * 239.99690 * 1 2 3 31 31 H 1.07998 * 121.02565 * 179.32085 * 6 5 4 32 32 H 1.08994 * 109.47415 * 107.68290 * 9 5 4 33 33 H 1.09001 * 109.46877 * 227.68925 * 9 5 4 34 34 H 0.96996 * 120.00454 * 4.96303 * 13 11 10 35 35 H 1.09002 * 109.47377 * 299.99781 * 14 13 11 36 36 H 1.09000 * 109.47589 * 59.99846 * 14 13 11 37 37 H 1.09002 * 109.46777 * 59.99560 * 16 15 14 38 38 H 1.08994 * 109.47610 * 179.97438 * 16 15 14 39 39 H 1.09002 * 109.47086 * 300.00327 * 16 15 14 40 40 H 1.09002 * 109.47151 * 60.00404 * 17 15 14 41 41 H 1.08997 * 109.47171 * 180.02562 * 17 15 14 42 42 H 1.08996 * 109.46826 * 299.99967 * 17 15 14 43 43 H 0.96996 * 119.99426 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.71453 * 55.13136 * 26 10 9 45 45 H 1.08997 * 109.71124 * 175.72093 * 26 10 9 46 46 H 1.09000 * 109.22186 * 279.99208 * 27 4 3 47 47 H 1.08999 * 109.22361 * 39.34770 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.0890 1.1186 0.0000 4 6 3.3980 1.2056 0.0114 5 6 4.1689 0.0394 0.0439 6 6 3.5317 -1.1714 0.0334 7 6 2.1211 -1.1763 0.0053 8 8 1.5050 -2.2298 -0.0132 9 6 5.6726 0.0651 0.1027 10 7 6.1497 1.4248 -0.1767 11 6 7.1853 1.6450 -1.0108 12 8 7.5014 2.7827 -1.3003 13 7 7.8703 0.6039 -1.5239 14 6 9.0616 0.8430 -2.3423 15 6 9.6462 -0.4963 -2.7957 16 6 10.0284 -1.3273 -1.5693 17 6 8.6043 -1.2543 -3.6209 18 6 10.8713 -0.2504 -3.6381 19 1 11.2005 0.7601 -3.8305 20 6 11.5727 -1.3154 -4.1624 21 7 11.1722 -2.5459 -3.9276 22 14 13.0918 -1.0105 -5.2059 23 1 14.2922 -0.9702 -4.3328 24 1 13.2381 -2.1053 -6.1985 25 1 12.9523 0.2862 -5.9161 26 6 5.4545 2.5386 0.4880 27 6 4.0160 2.5788 -0.0257 28 1 -0.3633 1.0277 0.0005 29 1 -0.3635 -0.5138 -0.8900 30 1 -0.3633 -0.5139 0.8900 31 1 4.0912 -2.0951 0.0465 32 1 6.0027 -0.2389 1.0960 33 1 6.0770 -0.6219 -0.6407 34 1 7.5746 -0.3036 -1.3514 35 1 8.7895 1.4354 -3.2159 36 1 9.8041 1.3826 -1.7544 37 1 9.1420 -1.5052 -0.9603 38 1 10.4444 -2.2816 -1.8922 39 1 10.7706 -0.7873 -0.9814 40 1 8.3321 -0.6623 -4.4947 41 1 9.0205 -2.2086 -3.9435 42 1 7.7180 -1.4322 -3.0119 43 1 11.6659 -3.2952 -4.2961 44 1 5.4555 2.3814 1.5666 45 1 5.9558 3.4775 0.2530 46 1 4.0114 2.9468 -1.0517 47 1 3.4304 3.2529 0.5994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434808774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:07 Heat of formation + Delta-G solvation = -9.913693 kcal Electronic energy + Delta-G solvation = -29366.824173 eV Core-core repulsion = 25357.659211 eV Total energy + Delta-G solvation = -4009.164962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.22269 -41.35165 -39.30946 -38.42473 -37.77933 -35.26510 -35.10356 -34.03922 -32.66705 -31.09138 -29.75850 -27.54609 -27.52565 -27.18016 -26.44610 -25.62880 -24.07555 -23.00857 -20.97035 -20.60443 -20.01856 -18.64837 -18.27954 -17.89634 -17.74626 -17.42993 -16.98083 -16.63980 -16.49036 -15.65963 -15.54758 -15.23728 -15.10951 -14.82861 -14.66374 -14.49078 -14.42175 -14.22747 -13.94330 -13.76970 -13.55229 -13.42309 -13.17197 -13.06548 -12.99300 -12.66021 -12.57699 -12.36837 -12.22135 -12.11735 -12.06959 -11.45343 -11.38725 -11.13862 -11.05544 -10.87823 -10.67493 -10.37337 -10.10904 -9.59657 -9.43503 -7.99985 -6.15046 -0.63173 0.42742 1.21187 1.44205 1.47379 1.54528 1.61485 2.16152 2.21673 2.47511 2.88710 3.05480 3.23356 3.24116 3.42393 3.64326 4.11982 4.14304 4.27212 4.29817 4.33070 4.44377 4.48831 4.53052 4.55858 4.58744 4.64636 4.69235 4.74486 4.87502 4.89612 5.01104 5.05417 5.08348 5.12970 5.16768 5.23743 5.41562 5.45358 5.64825 5.70252 5.71017 5.92380 6.18845 6.25687 6.46540 6.46815 6.89703 6.99924 7.05435 7.52705 7.59474 8.98813 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.002693 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.914171 B =10394.474179 C =11414.657386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.343 5.343 3 N -0.229 5.229 4 C 0.076 3.924 5 C -0.028 4.028 6 C -0.198 4.198 7 C 0.464 3.536 8 O -0.576 6.576 9 C 0.146 3.854 10 N -0.630 5.630 11 C 0.707 3.293 12 O -0.628 6.628 13 N -0.728 5.728 14 C 0.167 3.833 15 C 0.052 3.948 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.526 4.526 19 H 0.045 0.955 20 C 0.028 3.972 21 N -0.899 5.899 22 Si 0.943 3.057 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.129 3.871 27 C -0.061 4.061 28 H 0.122 0.878 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.181 0.819 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.403 0.597 35 H 0.035 0.965 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.259 0.741 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.910 6.251 12.717 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.162 5.162 3 N -0.053 5.053 4 C -0.093 4.093 5 C -0.035 4.035 6 C -0.228 4.228 7 C 0.265 3.735 8 O -0.459 6.459 9 C 0.023 3.977 10 N -0.368 5.368 11 C 0.408 3.592 12 O -0.509 6.509 13 N -0.385 5.385 14 C 0.043 3.957 15 C 0.052 3.948 16 C -0.178 4.178 17 C -0.178 4.178 18 C -0.565 4.565 19 H 0.064 0.936 20 C -0.171 4.171 21 N -0.538 5.538 22 Si 0.770 3.230 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.201 1.201 26 C 0.006 3.994 27 C -0.101 4.101 28 H 0.141 0.859 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.198 0.802 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.241 0.759 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.809 6.764 12.428 24.344 hybrid contribution 1.374 -1.182 -0.903 2.025 sum -18.435 5.581 11.525 22.446 Atomic orbital electron populations 1.22382 0.72414 1.06612 1.04777 1.46796 1.10742 1.02397 1.56306 1.71003 1.11944 1.11568 1.10829 1.21804 0.87301 0.97525 1.02649 1.20955 0.98089 0.92610 0.91877 1.22749 0.92494 1.00618 1.06958 1.18277 0.90490 0.84132 0.80625 1.90968 1.70311 1.30323 1.54313 1.20696 0.87631 0.84279 1.05136 1.47235 1.33439 1.08056 1.48067 1.15934 0.79883 0.84523 0.78840 1.90868 1.71720 1.22642 1.65709 1.45385 1.29861 1.08272 1.54939 1.21134 0.84142 0.98467 0.91999 1.18349 0.93205 0.89980 0.93311 1.21661 0.98356 1.01608 0.96154 1.21666 0.96376 1.01679 0.98049 1.21281 1.11006 0.92480 1.31721 0.93620 1.25431 0.99513 0.95097 0.97085 1.69909 1.40154 0.98190 1.45556 0.85792 0.80751 0.77533 0.78924 1.20459 1.21083 1.20100 1.21676 0.89774 0.90383 0.97546 1.20606 0.95330 0.89715 1.04401 0.85915 0.89572 0.89014 0.80192 0.85419 0.87713 0.75877 0.94682 0.94147 0.94319 0.92058 0.96080 0.96506 0.91980 0.94682 0.93119 0.87735 0.88389 0.89817 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 10.23 127.77 1.31 2.30 16 2 N -0.34 -6.68 3.61 -494.04 -1.79 -8.47 16 3 N -0.23 -4.09 10.69 -47.29 -0.51 -4.60 16 4 C 0.08 1.28 6.72 43.02 0.29 1.57 16 5 C -0.03 -0.48 5.81 -19.87 -0.12 -0.59 16 6 C -0.20 -3.78 9.75 22.64 0.22 -3.56 16 7 C 0.46 11.09 7.48 84.95 0.64 11.72 16 8 O -0.58 -17.57 17.11 -5.52 -0.09 -17.67 16 9 C 0.15 2.25 6.11 85.52 0.52 2.77 16 10 N -0.63 -13.19 2.94 -842.50 -2.47 -15.67 16 11 C 0.71 22.00 8.32 179.05 1.49 23.49 16 12 O -0.63 -24.64 15.84 -3.97 -0.06 -24.70 16 13 N -0.73 -23.43 4.86 -478.54 -2.33 -25.76 16 14 C 0.17 6.81 4.51 86.38 0.39 7.19 16 15 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 16 C -0.12 -5.07 8.08 71.98 0.58 -4.49 16 17 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 18 C -0.53 -27.20 8.01 25.60 0.21 -27.00 16 19 H 0.05 2.41 7.74 -2.91 -0.02 2.39 16 20 C 0.03 1.47 5.15 84.65 0.44 1.91 16 21 N -0.90 -47.23 9.36 21.45 0.20 -47.03 16 22 Si 0.94 42.09 29.54 68.60 2.03 44.12 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.13 1.97 6.40 86.18 0.55 2.52 16 27 C -0.06 -0.81 6.12 29.76 0.18 -0.62 16 28 H 0.12 0.94 8.05 -2.39 -0.02 0.92 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.64 5.96 -2.39 -0.01 1.63 16 34 H 0.40 11.11 3.81 -92.71 -0.35 10.75 16 35 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 38 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 42 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 43 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.82 7.08 -2.39 -0.02 1.80 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.03 372.83 2.87 -67.16 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.64 Total: 17.71 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 7.25 Total: 14.91 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -6.89 Total: -101.53 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.16 Total: -42.37 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -70.03 2.87 -67.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434808774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.247 kcal (2) G-P(sol) polarization free energy of solvation -70.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds