Wall clock time and date at job start Tue Mar 31 2020 19:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46568 * 54.99907 * 3 2 1 5 5 C 1.52999 * 109.47257 * 174.99793 * 3 2 1 6 6 N 1.46503 * 109.46915 * 295.00067 * 3 2 1 7 7 C 1.34770 * 119.99955 * 154.99820 * 6 3 2 8 8 O 1.21282 * 120.00074 * 0.02562 * 7 6 3 9 9 C 1.50702 * 120.00041 * 179.97438 * 7 6 3 10 10 H 1.08991 * 109.47442 * 300.00434 * 9 7 6 11 11 C 1.53005 * 109.46815 * 60.00200 * 9 7 6 12 12 N 1.46497 * 109.47138 * 179.97438 * 9 7 6 13 13 C 1.34783 * 119.99752 * 154.99822 * 12 9 7 14 14 O 1.21580 * 119.99941 * 0.02562 * 13 12 9 15 15 N 1.34777 * 119.99924 * 180.02562 * 13 12 9 16 16 C 1.39461 * 119.99909 * 175.06644 * 15 13 12 17 17 C 1.38638 * 119.64406 * 174.21822 * 16 15 13 18 18 C 1.40828 * 118.67297 * 179.71847 * 17 16 15 19 19 C 1.41538 * 120.99879 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99939 * 147.47613 * 19 18 17 21 21 C 1.40032 * 120.00277 * 327.47314 * 19 18 17 22 22 N 1.30743 * 119.99493 * 359.81737 * 21 19 18 23 23 Si 1.86794 * 120.00376 * 179.82551 * 21 19 18 24 24 H 1.48500 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47248 * 119.99673 * 23 21 19 26 26 H 1.48501 * 109.46990 * 240.00004 * 23 21 19 27 27 C 1.41170 * 118.00053 * 359.97438 * 18 17 16 28 28 C 1.36585 * 119.13155 * 0.02562 * 27 18 17 29 29 N 1.32069 * 121.25739 * 359.97438 * 28 27 18 30 30 H 1.08994 * 109.46865 * 300.00565 * 1 2 3 31 31 H 1.09000 * 109.46935 * 60.00087 * 1 2 3 32 32 H 1.08996 * 109.46768 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47554 * 239.99954 * 2 1 3 34 34 H 1.09000 * 109.46935 * 119.99913 * 2 1 3 35 35 H 1.08996 * 109.47105 * 59.99865 * 5 3 2 36 36 H 1.08995 * 109.47022 * 179.97438 * 5 3 2 37 37 H 1.09005 * 109.47084 * 300.00131 * 5 3 2 38 38 H 0.97003 * 119.99551 * 334.99262 * 6 3 2 39 39 H 1.09001 * 109.46792 * 59.99895 * 11 9 7 40 40 H 1.09005 * 109.46923 * 179.97438 * 11 9 7 41 41 H 1.08993 * 109.47171 * 300.00112 * 11 9 7 42 42 H 0.96996 * 120.00619 * 335.01262 * 12 9 7 43 43 H 0.97006 * 119.99964 * 355.05989 * 15 13 12 44 44 H 1.07994 * 120.66861 * 359.74370 * 17 16 15 45 45 H 0.97006 * 119.99746 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.42824 * 179.97438 * 27 18 17 47 47 H 1.08000 * 119.37588 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5649 1.4444 0.1258 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2996 8 8 1.7328 4.1029 -0.3064 9 6 1.1275 4.1122 -2.5875 10 1 1.8663 3.8900 -3.3573 11 6 -0.2425 3.5953 -3.0311 12 7 1.0585 5.5607 -2.3797 13 6 1.2232 6.3996 -3.4217 14 8 1.4287 5.9541 -4.5342 15 7 1.1603 7.7322 -3.2305 16 6 1.4323 8.6018 -4.2864 17 6 1.2490 9.9654 -4.1163 18 6 1.5356 10.8253 -5.1941 19 6 1.3657 12.2254 -5.0747 20 1 2.0193 12.8965 -5.6121 21 6 0.3500 12.7405 -4.2599 22 7 -0.4436 11.9280 -3.6122 23 14 0.1287 14.5882 -4.0985 24 1 1.1474 15.2829 -4.9261 25 1 -1.2297 14.9667 -4.5639 26 1 0.2930 14.9841 -2.6767 27 6 1.9976 10.2489 -6.3971 28 6 2.1473 8.8933 -6.4704 29 7 1.8688 8.1164 -5.4393 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9995 0.9054 -0.7160 36 1 3.9282 2.4720 0.1253 37 1 3.8532 0.9571 1.0572 38 1 1.4872 1.5660 -2.0463 39 1 -0.9814 3.8175 -2.2612 40 1 -0.5307 4.0830 -3.9624 41 1 -0.1917 2.5175 -3.1855 42 1 0.8944 5.9162 -1.4923 43 1 0.9256 8.0865 -2.3585 44 1 0.8939 10.3604 -3.1760 45 1 -1.1475 12.2848 -3.0480 46 1 2.2289 10.8718 -7.2486 47 1 2.5000 8.4481 -7.3890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467115833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:17 Heat of formation + Delta-G solvation = -38.005767 kcal Electronic energy + Delta-G solvation = -28220.196587 eV Core-core repulsion = 24209.813461 eV Total energy + Delta-G solvation = -4010.383126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.54670 -39.54508 -38.04558 -36.82329 -34.95818 -34.10089 -33.68033 -32.78437 -30.82677 -30.41895 -29.73715 -28.20505 -25.94591 -25.01555 -24.00259 -22.17483 -21.82286 -21.11561 -20.49389 -20.03423 -18.54668 -17.64857 -16.95812 -16.73699 -15.92534 -15.63050 -15.20664 -14.87797 -14.72872 -14.42997 -14.21599 -14.15892 -14.07310 -13.83665 -13.73637 -13.36069 -12.97255 -12.81950 -12.62336 -12.55963 -12.44829 -12.25532 -12.17189 -11.78530 -11.65292 -11.50585 -11.39212 -11.16516 -11.10521 -10.87924 -10.26020 -10.07903 -9.98409 -9.72895 -9.59077 -9.40780 -9.37280 -8.88052 -7.85261 -7.74676 -6.97749 -6.67536 -4.60007 2.38703 2.59806 2.72107 2.83822 3.05495 3.10627 3.21679 3.25961 3.86098 3.91361 4.24843 4.45146 4.57629 4.60741 4.64689 4.75978 4.98611 5.03290 5.07674 5.17248 5.21459 5.36306 5.42237 5.49561 5.52287 5.66377 5.69551 5.71203 5.80102 5.91433 5.95701 6.06999 6.19628 6.55500 6.59597 6.66144 6.81441 7.00148 7.18612 7.19010 7.32194 7.44185 7.52557 7.92463 7.93957 8.15065 8.41233 8.49799 8.76145 8.81507 9.17473 9.72401 10.18928 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.002127 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.900831 B =13161.735754 C =13677.433875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.140 3.860 4 H 0.089 0.911 5 C -0.165 4.165 6 N -0.722 5.722 7 C 0.515 3.485 8 O -0.534 6.534 9 C 0.149 3.851 10 H 0.114 0.886 11 C -0.159 4.159 12 N -0.738 5.738 13 C 0.697 3.303 14 O -0.536 6.536 15 N -0.665 5.665 16 C 0.353 3.647 17 C -0.234 4.234 18 C 0.142 3.858 19 C -0.458 4.458 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.803 5.803 23 Si 0.917 3.083 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.277 4.277 28 C 0.115 3.885 29 N -0.549 5.549 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.401 0.599 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.401 0.599 43 H 0.406 0.594 44 H 0.134 0.866 45 H 0.279 0.721 46 H 0.102 0.898 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -20.170 8.774 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.036 3.964 4 H 0.107 0.893 5 C -0.224 4.224 6 N -0.375 5.375 7 C 0.300 3.700 8 O -0.410 6.410 9 C 0.039 3.961 10 H 0.132 0.868 11 C -0.218 4.218 12 N -0.398 5.398 13 C 0.397 3.603 14 O -0.407 6.407 15 N -0.313 5.313 16 C 0.126 3.874 17 C -0.260 4.260 18 C 0.134 3.866 19 C -0.490 4.490 20 H 0.099 0.901 21 C -0.144 4.144 22 N -0.430 5.430 23 Si 0.742 3.258 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.300 4.300 28 C -0.039 4.039 29 N -0.267 5.267 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.236 0.764 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.237 0.763 43 H 0.240 0.760 44 H 0.152 0.848 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.550 -21.064 8.559 22.743 hybrid contribution -0.644 1.803 0.695 2.037 sum -0.094 -19.261 9.254 21.368 Atomic orbital electron populations 1.21785 0.95205 1.01764 1.02397 1.21843 0.96650 0.95291 1.03131 1.21028 0.95023 0.93019 0.87358 0.89312 1.22194 0.95274 1.02899 1.02014 1.46018 1.70917 1.06723 1.13836 1.20774 0.76364 0.82466 0.90364 1.90699 1.49800 1.63939 1.36530 1.20452 0.99731 0.81139 0.94816 0.86824 1.22173 0.95509 1.00890 1.03252 1.44893 1.79493 1.04214 1.11204 1.15966 0.78694 0.81246 0.84398 1.90993 1.52676 1.75361 1.21705 1.42511 1.71629 1.03842 1.13298 1.17991 0.95918 0.86517 0.86948 1.21709 1.12553 0.89680 1.02011 1.17616 0.86406 0.93579 0.89012 1.19564 1.13785 0.91510 1.24151 0.90106 1.25921 0.94742 1.00548 0.93189 1.69733 1.14381 1.36545 1.22366 0.86118 0.79011 0.81878 0.78836 1.18464 1.19931 1.19858 1.21758 1.14192 0.95367 0.98714 1.21479 0.96723 0.90388 0.95260 1.67163 1.20784 1.39153 0.99629 0.92545 0.92415 0.92520 0.91294 0.90362 0.92375 0.91879 0.91635 0.76384 0.92004 0.90256 0.91561 0.76333 0.75952 0.84833 0.91022 0.87941 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.80 37.16 0.36 -0.42 16 2 C -0.13 -0.63 5.47 -26.73 -0.15 -0.78 16 3 C 0.14 1.01 2.57 -67.92 -0.17 0.84 16 4 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 5 C -0.17 -1.22 9.48 37.16 0.35 -0.87 16 6 N -0.72 -5.63 4.42 -53.80 -0.24 -5.86 16 7 C 0.51 5.84 7.19 -10.99 -0.08 5.76 16 8 O -0.53 -7.82 15.50 5.56 0.09 -7.73 16 9 C 0.15 1.82 2.99 -69.08 -0.21 1.61 16 10 H 0.11 1.48 7.58 -51.93 -0.39 1.09 16 11 C -0.16 -1.62 9.38 37.16 0.35 -1.28 16 12 N -0.74 -11.10 4.96 -59.81 -0.30 -11.40 16 13 C 0.70 13.75 8.48 -86.91 -0.74 13.01 16 14 O -0.54 -12.45 14.30 5.30 0.08 -12.37 16 15 N -0.67 -13.61 5.40 -15.86 -0.09 -13.69 16 16 C 0.35 8.73 7.40 -154.68 -1.15 7.58 16 17 C -0.23 -6.02 8.60 -38.46 -0.33 -6.36 16 18 C 0.14 3.79 5.57 -106.55 -0.59 3.19 16 19 C -0.46 -11.92 9.12 -37.65 -0.34 -12.26 16 20 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 21 C 0.07 1.79 5.41 -17.34 -0.09 1.70 16 22 N -0.80 -20.22 10.69 55.55 0.59 -19.63 16 23 Si 0.92 18.41 29.56 -169.99 -5.02 13.39 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.28 -6.84 9.85 -39.07 -0.38 -7.22 16 28 C 0.12 2.80 11.10 -18.05 -0.20 2.60 16 29 N -0.55 -14.18 7.90 -12.76 -0.10 -14.28 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 7.75 -51.93 -0.40 -0.09 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 2.18 8.02 -40.82 -0.33 1.86 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 42 H 0.40 5.57 7.81 -40.82 -0.32 5.25 16 43 H 0.41 6.99 8.72 -40.82 -0.36 6.64 16 44 H 0.13 3.44 6.25 -52.49 -0.33 3.11 16 45 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 46 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 47 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 393.26 15.07 5.93 5.93 Total: -1.00 -33.41 393.26 -9.54 -42.96 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -7.11 Total: 15.60 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -3.37 Total: 7.10 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.13 Total: -64.87 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.41 -9.54 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467115833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.949 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds