Wall clock time and date at job start Tue Mar 31 2020 19:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46568 * 54.99907 * 3 2 1 5 5 C 1.52999 * 109.47257 * 174.99793 * 3 2 1 6 6 N 1.46503 * 109.46915 * 295.00067 * 3 2 1 7 7 C 1.34770 * 119.99955 * 154.99820 * 6 3 2 8 8 O 1.21282 * 120.00074 * 0.02562 * 7 6 3 9 9 C 1.50702 * 120.00041 * 179.97438 * 7 6 3 10 10 H 1.08991 * 109.47442 * 300.00434 * 9 7 6 11 11 C 1.53005 * 109.46815 * 60.00200 * 9 7 6 12 12 N 1.46497 * 109.47138 * 179.97438 * 9 7 6 13 13 C 1.34783 * 119.99752 * 154.99822 * 12 9 7 14 14 O 1.21580 * 119.99941 * 0.02562 * 13 12 9 15 15 N 1.34777 * 119.99924 * 180.02562 * 13 12 9 16 16 C 1.39461 * 119.99909 * 175.06644 * 15 13 12 17 17 C 1.38638 * 119.64406 * 174.21822 * 16 15 13 18 18 C 1.40828 * 118.67297 * 179.71847 * 17 16 15 19 19 C 1.41538 * 120.99879 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99939 * 147.47613 * 19 18 17 21 21 C 1.40032 * 120.00277 * 327.47314 * 19 18 17 22 22 N 1.30743 * 119.99493 * 359.81737 * 21 19 18 23 23 Si 1.86794 * 120.00376 * 179.82551 * 21 19 18 24 24 H 1.48500 * 109.46983 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47248 * 119.99673 * 23 21 19 26 26 H 1.48501 * 109.46990 * 240.00004 * 23 21 19 27 27 C 1.41170 * 118.00053 * 359.97438 * 18 17 16 28 28 C 1.36585 * 119.13155 * 0.02562 * 27 18 17 29 29 N 1.32069 * 121.25739 * 359.97438 * 28 27 18 30 30 H 1.08994 * 109.46865 * 300.00565 * 1 2 3 31 31 H 1.09000 * 109.46935 * 60.00087 * 1 2 3 32 32 H 1.08996 * 109.46768 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47554 * 239.99954 * 2 1 3 34 34 H 1.09000 * 109.46935 * 119.99913 * 2 1 3 35 35 H 1.08996 * 109.47105 * 59.99865 * 5 3 2 36 36 H 1.08995 * 109.47022 * 179.97438 * 5 3 2 37 37 H 1.09005 * 109.47084 * 300.00131 * 5 3 2 38 38 H 0.97003 * 119.99551 * 334.99262 * 6 3 2 39 39 H 1.09001 * 109.46792 * 59.99895 * 11 9 7 40 40 H 1.09005 * 109.46923 * 179.97438 * 11 9 7 41 41 H 1.08993 * 109.47171 * 300.00112 * 11 9 7 42 42 H 0.96996 * 120.00619 * 335.01262 * 12 9 7 43 43 H 0.97006 * 119.99964 * 355.05989 * 15 13 12 44 44 H 1.07994 * 120.66861 * 359.74370 * 17 16 15 45 45 H 0.97006 * 119.99746 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.42824 * 179.97438 * 27 18 17 47 47 H 1.08000 * 119.37588 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5649 1.4444 0.1258 6 7 1.6525 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2996 8 8 1.7328 4.1029 -0.3064 9 6 1.1275 4.1122 -2.5875 10 1 1.8663 3.8900 -3.3573 11 6 -0.2425 3.5953 -3.0311 12 7 1.0585 5.5607 -2.3797 13 6 1.2232 6.3996 -3.4217 14 8 1.4287 5.9541 -4.5342 15 7 1.1603 7.7322 -3.2305 16 6 1.4323 8.6018 -4.2864 17 6 1.2490 9.9654 -4.1163 18 6 1.5356 10.8253 -5.1941 19 6 1.3657 12.2254 -5.0747 20 1 2.0193 12.8965 -5.6121 21 6 0.3500 12.7405 -4.2599 22 7 -0.4436 11.9280 -3.6122 23 14 0.1287 14.5882 -4.0985 24 1 1.1474 15.2829 -4.9261 25 1 -1.2297 14.9667 -4.5639 26 1 0.2930 14.9841 -2.6767 27 6 1.9976 10.2489 -6.3971 28 6 2.1473 8.8933 -6.4704 29 7 1.8688 8.1164 -5.4393 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9995 0.9054 -0.7160 36 1 3.9282 2.4720 0.1253 37 1 3.8532 0.9571 1.0572 38 1 1.4872 1.5660 -2.0463 39 1 -0.9814 3.8175 -2.2612 40 1 -0.5307 4.0830 -3.9624 41 1 -0.1917 2.5175 -3.1855 42 1 0.8944 5.9162 -1.4923 43 1 0.9256 8.0865 -2.3585 44 1 0.8939 10.3604 -3.1760 45 1 -1.1475 12.2848 -3.0480 46 1 2.2289 10.8718 -7.2486 47 1 2.5000 8.4481 -7.3890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467115833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:15 Heat of formation + Delta-G solvation = -60.344122 kcal Electronic energy + Delta-G solvation = -28221.165250 eV Core-core repulsion = 24209.813461 eV Total energy + Delta-G solvation = -4011.351789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.74206 -40.94551 -39.75167 -37.60364 -36.35471 -35.78194 -35.46751 -33.57871 -32.42493 -31.73681 -30.57711 -29.81870 -27.88717 -25.93415 -24.66447 -23.83349 -23.49138 -22.01184 -21.62557 -21.35972 -19.98301 -19.42603 -18.25782 -17.65745 -17.27905 -17.06992 -16.75973 -16.16476 -16.03974 -15.89525 -15.85850 -15.32941 -14.87528 -14.82117 -14.62049 -14.54960 -14.38304 -14.31718 -14.29864 -13.71248 -13.37030 -13.22636 -13.14933 -12.85809 -12.69073 -12.67335 -12.65327 -12.24896 -12.12406 -11.93588 -11.83326 -11.61836 -11.50641 -11.31648 -11.19746 -10.96968 -10.25241 -10.12158 -9.82491 -9.66575 -8.83459 -8.53817 -6.57731 0.82044 1.01596 1.41067 1.42008 1.46366 1.54958 1.57589 2.14264 2.22155 2.27342 2.86967 3.12723 3.55419 3.74217 3.81320 4.00264 4.05849 4.14114 4.16963 4.20435 4.50746 4.60814 4.63866 4.70156 4.76650 4.78381 4.83900 4.85231 4.92845 4.99822 5.11247 5.14947 5.18357 5.19112 5.27493 5.27877 5.37173 5.44629 5.49701 5.52568 5.65917 5.79579 6.01022 6.27009 6.43763 6.57295 6.80181 6.85665 6.91844 7.11483 7.55797 7.85930 8.34980 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022414 B = 0.002127 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.900831 B =13161.735754 C =13677.433875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.163 4.163 6 N -0.703 5.703 7 C 0.520 3.480 8 O -0.570 6.570 9 C 0.144 3.856 10 H 0.108 0.892 11 C -0.151 4.151 12 N -0.723 5.723 13 C 0.698 3.302 14 O -0.572 6.572 15 N -0.661 5.661 16 C 0.351 3.649 17 C -0.251 4.251 18 C 0.113 3.887 19 C -0.486 4.486 20 H 0.084 0.916 21 C 0.032 3.968 22 N -0.828 5.828 23 Si 0.993 3.007 24 H -0.257 1.257 25 H -0.268 1.268 26 H -0.264 1.264 27 C -0.287 4.287 28 C 0.111 3.889 29 N -0.571 5.571 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.080 0.920 38 H 0.416 0.584 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.408 0.592 43 H 0.418 0.582 44 H 0.127 0.873 45 H 0.288 0.712 46 H 0.119 0.881 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -21.363 9.223 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C 0.034 3.966 4 H 0.088 0.912 5 C -0.221 4.221 6 N -0.355 5.355 7 C 0.306 3.694 8 O -0.450 6.450 9 C 0.035 3.965 10 H 0.126 0.874 11 C -0.210 4.210 12 N -0.382 5.382 13 C 0.397 3.603 14 O -0.446 6.446 15 N -0.310 5.310 16 C 0.123 3.877 17 C -0.277 4.277 18 C 0.105 3.895 19 C -0.517 4.517 20 H 0.102 0.898 21 C -0.183 4.183 22 N -0.455 5.455 23 Si 0.813 3.187 24 H -0.181 1.181 25 H -0.193 1.193 26 H -0.189 1.189 27 C -0.311 4.311 28 C -0.042 4.042 29 N -0.290 5.290 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.245 0.755 43 H 0.255 0.745 44 H 0.145 0.855 45 H 0.099 0.901 46 H 0.137 0.863 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.173 -22.340 9.041 24.101 hybrid contribution -0.530 2.054 0.592 2.202 sum -0.357 -20.286 9.633 22.460 Atomic orbital electron populations 1.21799 0.95356 1.02303 1.01825 1.21802 0.96378 0.93309 1.04509 1.21130 0.94986 0.94307 0.86135 0.91248 1.22169 0.95205 1.01298 1.03423 1.45907 1.69242 1.05525 1.14875 1.20543 0.76204 0.83436 0.89265 1.90692 1.51783 1.64967 1.37510 1.20688 1.01028 0.79413 0.95372 0.87424 1.22115 0.93964 1.02977 1.01901 1.44780 1.77969 1.05153 1.10309 1.16047 0.78349 0.81100 0.84782 1.90959 1.54387 1.75868 1.23391 1.42434 1.71449 1.04091 1.13038 1.18172 0.95048 0.86937 0.87538 1.21665 1.13931 0.90271 1.01815 1.18057 0.87065 0.94460 0.89959 1.19845 1.14838 0.91578 1.25478 0.89829 1.26828 0.93808 1.05433 0.92205 1.69790 1.14602 1.38742 1.22337 0.84991 0.79015 0.75546 0.79127 1.18069 1.19309 1.18891 1.21946 1.14444 0.95906 0.98810 1.21967 0.95873 0.90406 0.95980 1.67293 1.21724 1.39721 1.00301 0.93600 0.92554 0.91437 0.89697 0.89181 0.91209 0.94877 0.90091 0.74647 0.91550 0.92734 0.87747 0.75504 0.74464 0.85508 0.90118 0.86331 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.80 71.98 0.71 -0.52 16 2 C -0.12 -0.84 5.47 30.60 0.17 -0.67 16 3 C 0.14 1.79 2.57 44.99 0.12 1.91 16 4 H 0.07 1.22 7.58 -2.39 -0.02 1.20 16 5 C -0.16 -2.19 9.48 71.98 0.68 -1.51 16 6 N -0.70 -9.77 4.42 -442.52 -1.96 -11.73 16 7 C 0.52 11.40 7.19 87.66 0.63 12.03 16 8 O -0.57 -16.73 15.50 -3.03 -0.05 -16.78 16 9 C 0.14 3.43 2.99 44.25 0.13 3.57 16 10 H 0.11 2.76 7.58 -2.39 -0.02 2.74 16 11 C -0.15 -2.88 9.38 71.98 0.68 -2.20 16 12 N -0.72 -21.82 4.96 -461.41 -2.29 -24.11 16 13 C 0.70 27.89 8.48 179.05 1.52 29.41 16 14 O -0.57 -26.94 14.30 -3.97 -0.06 -26.99 16 15 N -0.66 -27.63 5.40 -322.36 -1.74 -29.37 16 16 C 0.35 17.75 7.40 132.76 0.98 18.74 16 17 C -0.25 -13.30 8.60 23.00 0.20 -13.10 16 18 C 0.11 6.15 5.57 -21.11 -0.12 6.03 16 19 C -0.49 -25.60 9.12 23.52 0.21 -25.38 16 20 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 21 C 0.03 1.56 5.41 85.29 0.46 2.02 16 22 N -0.83 -41.94 10.69 21.84 0.23 -41.71 16 23 Si 0.99 37.22 29.56 68.60 2.03 39.25 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 27 C -0.29 -14.37 9.85 22.60 0.22 -14.15 16 28 C 0.11 5.41 11.10 84.27 0.94 6.34 16 29 N -0.57 -29.93 7.90 -194.28 -1.53 -31.46 16 30 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.46 7.75 -2.39 -0.02 0.44 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.42 3.40 8.02 -92.71 -0.74 2.66 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.35 8.14 -2.38 -0.02 1.34 16 41 H 0.10 1.16 7.56 -2.39 -0.02 1.14 16 42 H 0.41 11.36 7.81 -92.71 -0.72 10.64 16 43 H 0.42 14.76 8.72 -92.70 -0.81 13.96 16 44 H 0.13 6.76 6.25 -2.91 -0.02 6.74 16 45 H 0.29 13.14 8.29 -92.70 -0.77 12.37 16 46 H 0.12 5.37 8.06 -2.91 -0.02 5.34 16 47 H 0.15 6.27 8.06 -2.91 -0.02 6.24 16 Total: -1.00 -73.80 393.26 0.90 -72.90 By element: Atomic # 1 Polarization: 48.76 SS G_CDS: -1.26 Total: 47.50 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 7.52 Total: 22.50 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -7.28 Total: -138.38 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.10 Total: -43.77 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -73.80 0.90 -72.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467115833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.552 kcal (2) G-P(sol) polarization free energy of solvation -73.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds