Wall clock time and date at job start Tue Mar 31 2020 19:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 H 1.09005 * 109.46668 * 55.00083 * 3 2 1 5 5 C 1.53003 * 109.47183 * 174.99512 * 3 2 1 6 6 N 1.46490 * 109.47412 * 295.00182 * 3 2 1 7 7 C 1.34777 * 120.00306 * 155.00023 * 6 3 2 8 8 O 1.21283 * 120.00031 * 359.97438 * 7 6 3 9 9 C 1.50706 * 120.00213 * 179.97438 * 7 6 3 10 10 H 1.09001 * 109.47022 * 59.99837 * 9 7 6 11 11 C 1.52997 * 109.46808 * 299.99860 * 9 7 6 12 12 N 1.46494 * 109.46878 * 179.97438 * 9 7 6 13 13 C 1.34786 * 119.99842 * 204.99965 * 12 9 7 14 14 O 1.21575 * 119.99582 * 359.72305 * 13 12 9 15 15 N 1.34771 * 119.99772 * 180.02562 * 13 12 9 16 16 C 1.39460 * 119.99445 * 174.86877 * 15 13 12 17 17 C 1.38646 * 119.64644 * 185.21964 * 16 15 13 18 18 C 1.40820 * 118.67382 * 179.97438 * 17 16 15 19 19 C 1.41550 * 120.99719 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99940 * 149.49436 * 19 18 17 21 21 C 1.40034 * 119.99986 * 329.49176 * 19 18 17 22 22 N 1.30737 * 120.00402 * 167.68750 * 21 19 18 23 23 Si 1.86801 * 119.99875 * 347.68861 * 21 19 18 24 24 H 1.48504 * 109.47244 * 92.44145 * 23 21 19 25 25 H 1.48501 * 109.47026 * 212.43972 * 23 21 19 26 26 H 1.48497 * 109.47459 * 332.43924 * 23 21 19 27 27 C 1.41160 * 118.00913 * 0.02562 * 18 17 16 28 28 C 1.36598 * 119.12344 * 359.97438 * 27 18 17 29 29 N 1.32062 * 121.25824 * 359.74473 * 28 27 18 30 30 H 1.09006 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47521 * 299.99583 * 1 2 3 32 32 H 1.09003 * 109.46689 * 60.00286 * 1 2 3 33 33 H 1.09000 * 109.47365 * 239.99979 * 2 1 3 34 34 H 1.09005 * 109.47074 * 120.00382 * 2 1 3 35 35 H 1.08997 * 109.46550 * 60.00510 * 5 3 2 36 36 H 1.08996 * 109.46905 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47164 * 300.00239 * 5 3 2 38 38 H 0.97004 * 119.99868 * 334.99351 * 6 3 2 39 39 H 1.09001 * 109.47197 * 179.97438 * 11 9 7 40 40 H 1.09001 * 109.47310 * 299.99800 * 11 9 7 41 41 H 1.09005 * 109.47401 * 59.99786 * 11 9 7 42 42 H 0.96996 * 120.00775 * 25.00135 * 12 9 7 43 43 H 0.97002 * 120.00588 * 354.86938 * 15 13 12 44 44 H 1.07995 * 120.66345 * 0.02562 * 17 16 15 45 45 H 0.96993 * 120.00554 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.44110 * 179.97438 * 27 18 17 47 47 H 1.07995 * 119.36640 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5649 1.4444 0.1258 6 7 1.6525 2.0975 -1.2517 7 6 1.5256 3.4385 -1.2995 8 8 1.7319 4.1029 -0.3060 9 6 1.1275 4.1123 -2.5873 10 1 0.1515 3.7441 -2.9034 11 6 2.1648 3.8005 -3.6679 12 7 1.0585 5.5608 -2.3794 13 6 0.2726 6.3184 -3.1701 14 8 -0.3750 5.8003 -4.0590 15 7 0.2096 7.6510 -2.9792 16 6 -0.5181 8.4482 -3.8622 17 6 -0.4899 9.8274 -3.7235 18 6 -1.2318 10.6127 -4.6268 19 6 -1.2386 12.0249 -4.5301 20 1 -1.3586 12.6264 -5.4189 21 6 -1.0896 12.6419 -3.2819 22 7 -0.8546 13.9260 -3.2112 23 14 -1.2268 11.6301 -1.7176 24 1 0.1225 11.1614 -1.3112 25 1 -1.8066 12.4667 -0.6363 26 1 -2.1053 10.4580 -1.9615 27 6 -1.9696 9.9494 -5.6310 28 6 -1.9362 8.5850 -5.6888 29 7 -1.2248 7.8799 -4.8282 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.9994 0.9054 -0.7160 36 1 3.9281 2.4720 0.1263 37 1 3.8532 0.9570 1.0572 38 1 1.4872 1.5661 -2.0462 39 1 1.8766 4.2875 -4.5995 40 1 3.1408 4.1687 -3.3518 41 1 2.2157 2.7226 -3.8224 42 1 1.5783 5.9748 -1.6729 43 1 0.6703 8.0557 -2.2276 44 1 0.0902 10.2903 -2.9390 45 1 -0.7518 14.3535 -2.3467 46 1 -2.5527 10.5131 -6.3441 47 1 -2.4995 8.0735 -6.4551 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467115842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:20 Heat of formation + Delta-G solvation = -58.715842 kcal Electronic energy + Delta-G solvation = -28391.730731 eV Core-core repulsion = 24380.449549 eV Total energy + Delta-G solvation = -4011.281182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.82340 -41.04049 -39.90961 -37.62122 -36.41533 -35.81011 -35.55645 -33.61788 -33.18751 -31.80792 -30.64952 -29.98562 -27.91055 -25.91332 -24.68586 -24.19107 -23.53299 -22.00113 -21.66851 -21.35740 -20.16456 -19.48486 -18.46860 -17.72183 -17.51782 -17.13904 -16.70845 -16.43331 -16.24638 -16.19448 -15.91375 -15.30871 -14.89987 -14.86670 -14.78427 -14.73966 -14.61315 -14.49733 -14.31508 -13.77410 -13.46782 -13.33082 -13.19070 -12.77418 -12.73099 -12.65724 -12.61942 -12.59672 -12.26657 -11.96293 -11.84744 -11.63202 -11.59710 -11.39961 -11.17425 -10.98203 -10.26452 -10.15058 -10.11132 -9.70542 -8.99883 -8.95158 -6.72893 0.60144 0.76458 1.23158 1.33432 1.38036 1.46017 1.46794 2.07110 2.08342 2.22479 2.69759 3.04035 3.53333 3.54306 3.80150 3.96754 4.03796 4.06877 4.12950 4.19083 4.44224 4.49793 4.60417 4.61300 4.63898 4.64961 4.75490 4.76113 4.77434 4.85586 4.99401 5.11882 5.12718 5.16007 5.19884 5.28765 5.29864 5.34042 5.41510 5.51627 5.51980 5.64867 5.80154 6.10594 6.27442 6.43318 6.51923 6.69078 6.81404 7.10833 7.46269 7.72562 8.10647 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002403 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.845604 B =11647.920581 C =12362.458215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C 0.137 3.863 4 H 0.065 0.935 5 C -0.160 4.160 6 N -0.703 5.703 7 C 0.519 3.481 8 O -0.571 6.571 9 C 0.144 3.856 10 H 0.110 0.890 11 C -0.151 4.151 12 N -0.723 5.723 13 C 0.698 3.302 14 O -0.564 6.564 15 N -0.666 5.666 16 C 0.385 3.615 17 C -0.328 4.328 18 C 0.114 3.886 19 C -0.466 4.466 20 H 0.068 0.932 21 C 0.052 3.948 22 N -0.836 5.836 23 Si 0.966 3.034 24 H -0.248 1.248 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.280 4.280 28 C 0.130 3.870 29 N -0.568 5.568 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.416 0.584 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.409 0.591 43 H 0.420 0.580 44 H 0.116 0.884 45 H 0.298 0.702 46 H 0.123 0.877 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.464 -27.311 8.002 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.160 4.160 3 C 0.033 3.967 4 H 0.083 0.917 5 C -0.218 4.218 6 N -0.356 5.356 7 C 0.305 3.695 8 O -0.450 6.450 9 C 0.035 3.965 10 H 0.128 0.872 11 C -0.210 4.210 12 N -0.381 5.381 13 C 0.398 3.602 14 O -0.437 6.437 15 N -0.314 5.314 16 C 0.155 3.845 17 C -0.354 4.354 18 C 0.106 3.894 19 C -0.497 4.497 20 H 0.086 0.914 21 C -0.165 4.165 22 N -0.462 5.462 23 Si 0.790 3.210 24 H -0.173 1.173 25 H -0.205 1.205 26 H -0.186 1.186 27 C -0.303 4.303 28 C -0.021 4.021 29 N -0.288 5.288 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.254 0.746 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.246 0.754 43 H 0.257 0.743 44 H 0.133 0.867 45 H 0.108 0.892 46 H 0.141 0.859 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.108 -28.070 7.944 30.279 hybrid contribution 0.186 1.714 0.877 1.934 sum 8.294 -26.356 8.821 29.004 Atomic orbital electron populations 1.21812 0.95851 1.02256 1.01543 1.21807 0.95934 0.93607 1.04650 1.21124 0.95415 0.94067 0.86053 0.91701 1.22141 0.94588 1.01603 1.03447 1.45909 1.69242 1.05579 1.14829 1.20571 0.76259 0.83453 0.89258 1.90694 1.51828 1.65018 1.37444 1.20698 1.02709 0.79707 0.93350 0.87188 1.22109 0.97630 1.04044 0.97182 1.44800 1.48940 1.06901 1.37507 1.16006 0.80545 0.81121 0.82545 1.90985 1.46960 1.71565 1.34207 1.42523 1.52940 1.05869 1.30105 1.17921 0.90652 0.86548 0.89394 1.21282 1.12722 0.91869 1.09533 1.17902 0.87681 0.93265 0.90587 1.19481 1.44341 0.90423 0.95451 0.91358 1.26801 0.89980 0.96030 1.03669 1.69618 1.34271 1.12400 1.29914 0.85488 0.80531 0.78591 0.76356 1.17266 1.20501 1.18626 1.21887 1.07433 0.95532 1.05489 1.22131 0.93948 0.90883 0.95155 1.67446 1.14132 1.39716 1.07480 0.91385 0.93837 0.92975 0.89414 0.89120 0.90855 0.94360 0.90358 0.74636 0.92531 0.91616 0.87823 0.75406 0.74300 0.86659 0.89153 0.85944 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.80 71.98 0.71 -0.68 16 2 C -0.12 -0.78 5.47 30.60 0.17 -0.61 16 3 C 0.14 1.59 2.57 44.99 0.12 1.71 16 4 H 0.06 1.11 7.58 -2.38 -0.02 1.09 16 5 C -0.16 -1.69 9.48 71.98 0.68 -1.01 16 6 N -0.70 -8.59 4.42 -442.53 -1.96 -10.55 16 7 C 0.52 10.28 7.19 87.66 0.63 10.91 16 8 O -0.57 -15.51 15.50 -3.04 -0.05 -15.56 16 9 C 0.14 3.06 2.98 44.25 0.13 3.19 16 10 H 0.11 2.48 7.58 -2.39 -0.02 2.47 16 11 C -0.15 -2.54 9.38 71.98 0.68 -1.86 16 12 N -0.72 -19.46 4.96 -461.42 -2.29 -21.75 16 13 C 0.70 25.14 8.49 179.05 1.52 26.66 16 14 O -0.56 -24.19 14.26 -3.95 -0.06 -24.25 16 15 N -0.67 -24.87 5.40 -322.37 -1.74 -26.61 16 16 C 0.38 17.61 7.42 132.76 0.99 18.60 16 17 C -0.33 -15.66 6.95 23.00 0.16 -15.50 16 18 C 0.11 5.83 5.17 -21.11 -0.11 5.72 16 19 C -0.47 -25.43 9.67 23.52 0.23 -25.20 16 20 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 21 C 0.05 2.71 5.48 85.29 0.47 3.17 16 22 N -0.84 -44.11 13.92 21.84 0.30 -43.81 16 23 Si 0.97 41.72 24.43 68.60 1.68 43.40 16 24 H -0.25 -9.69 6.67 99.48 0.66 -9.03 16 25 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.26 -12.01 6.65 99.48 0.66 -11.35 16 27 C -0.28 -13.08 9.85 22.60 0.22 -12.85 16 28 C 0.13 5.78 11.10 84.27 0.94 6.72 16 29 N -0.57 -27.14 7.85 -194.27 -1.53 -28.66 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.51 7.75 -2.39 -0.02 0.49 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.42 2.72 8.02 -92.71 -0.74 1.98 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 0.96 7.57 -2.38 -0.02 0.94 16 42 H 0.41 10.05 7.81 -92.71 -0.72 9.33 16 43 H 0.42 12.82 8.72 -92.71 -0.81 12.01 16 44 H 0.12 5.22 4.43 -2.91 -0.01 5.21 16 45 H 0.30 14.04 8.29 -92.71 -0.77 13.27 16 46 H 0.12 5.27 8.06 -2.91 -0.02 5.25 16 47 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 Total: -1.00 -72.86 387.37 0.54 -72.31 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.34 Total: 36.51 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.52 Total: 18.97 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -7.21 Total: -131.38 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.10 Total: -39.81 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.68 Total: 43.40 kcal Total: -72.86 0.54 -72.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467115842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.599 kcal (2) G-P(sol) polarization free energy of solvation -72.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds