Wall clock time and date at job start Tue Mar 31 2020 18:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99744 * 2 1 4 4 C 1.34771 * 119.99996 * 179.97438 * 2 1 3 5 5 O 1.21519 * 119.99969 * 354.74641 * 4 2 1 6 6 C 1.48182 * 119.99944 * 174.74794 * 4 2 1 7 7 C 1.39077 * 119.69001 * 173.20087 * 6 4 2 8 8 C 1.39371 * 118.96552 * 180.27354 * 7 6 4 9 9 N 1.39557 * 120.82631 * 179.70409 * 8 7 6 10 10 C 1.34772 * 119.99903 * 213.21624 * 9 8 7 11 11 O 1.21581 * 120.00186 * 5.42140 * 10 9 8 12 12 N 1.34776 * 120.00017 * 185.41497 * 10 9 8 13 13 C 1.46503 * 120.00220 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47133 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47071 * 299.99453 * 14 13 12 16 16 C 1.52994 * 109.47610 * 59.99525 * 14 13 12 17 17 C 1.50699 * 109.47231 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99946 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00340 * 179.97438 * 17 14 13 20 20 N 1.31519 * 120.00004 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00021 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47473 * 59.99674 * 21 19 17 23 23 H 1.48505 * 109.47314 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46752 * 299.99252 * 21 19 17 25 25 C 1.39344 * 118.34390 * 359.44584 * 8 7 6 26 26 C 1.38284 * 119.27239 * 0.55999 * 25 8 7 27 27 N 1.31625 * 120.98416 * 359.70099 * 26 25 8 28 28 H 1.08995 * 109.47472 * 240.00296 * 1 2 3 29 29 H 1.09002 * 109.47122 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47269 * 119.99901 * 1 2 3 31 31 H 1.09006 * 109.46450 * 264.26794 * 3 2 1 32 32 H 1.08995 * 109.47125 * 24.26809 * 3 2 1 33 33 H 1.08996 * 109.46957 * 144.27041 * 3 2 1 34 34 H 1.07998 * 120.52122 * 0.02562 * 7 6 4 35 35 H 0.96996 * 119.99910 * 33.22416 * 9 8 7 36 36 H 0.96997 * 119.99960 * 0.02562 * 12 10 9 37 37 H 1.09010 * 109.46813 * 299.99970 * 13 12 10 38 38 H 1.09002 * 109.47119 * 59.99675 * 13 12 10 39 39 H 1.09003 * 109.47464 * 60.00416 * 15 14 13 40 40 H 1.08996 * 109.47364 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47470 * 300.00560 * 15 14 13 42 42 H 1.09010 * 109.46992 * 60.00023 * 16 14 13 43 43 H 1.09005 * 109.47623 * 179.97438 * 16 14 13 44 44 H 1.08997 * 109.47315 * 300.00249 * 16 14 13 45 45 H 0.96997 * 120.00211 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.36450 * 180.28455 * 25 8 7 47 47 H 1.08003 * 119.50762 * 179.72382 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5351 -2.2173 0.0974 6 6 3.6160 -1.1699 -0.1169 7 6 4.3162 -2.3630 0.0263 8 6 5.7057 -2.3472 -0.0813 9 7 6.4474 -3.5206 0.0619 10 6 7.6770 -3.4777 0.6120 11 8 8.1007 -2.4355 1.0731 12 7 8.4370 -4.5900 0.6512 13 6 9.7733 -4.5435 1.2497 14 6 10.4183 -5.9284 1.1657 15 6 9.5553 -6.9396 1.9230 16 6 10.5305 -6.3506 -0.3005 17 6 11.7932 -5.8804 1.7808 18 1 12.1695 -4.9546 2.1903 19 6 12.5706 -7.0183 1.8208 20 7 12.1122 -8.1458 1.3225 21 14 14.2746 -6.9589 2.5839 22 1 14.1658 -6.5487 4.0069 23 1 14.9007 -8.3031 2.5022 24 1 15.1124 -5.9778 1.8484 25 6 6.3354 -1.1315 -0.3409 26 6 5.5695 0.0125 -0.4706 27 7 4.2588 -0.0331 -0.3584 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.4680 1.5320 -1.0226 32 1 1.5678 2.0518 0.4224 33 1 3.1016 1.1663 0.6001 34 1 3.7918 -3.2866 0.2220 35 1 6.0781 -4.3671 -0.2347 36 1 8.0991 -5.4214 0.2831 37 1 10.3883 -3.8233 0.7099 38 1 9.6934 -4.2423 2.2943 39 1 8.5609 -6.9744 1.4777 40 1 10.0149 -7.9262 1.8635 41 1 9.4752 -6.6389 2.9676 42 1 11.1454 -5.6301 -0.8401 43 1 10.9904 -7.3371 -0.3605 44 1 9.5363 -6.3853 -0.7458 45 1 12.6590 -8.9465 1.3510 46 1 7.4101 -1.0826 -0.4353 47 1 6.0540 0.9575 -0.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476178937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:16 Heat of formation + Delta-G solvation = -7.690618 kcal Electronic energy + Delta-G solvation = -28224.582829 eV Core-core repulsion = 24215.514267 eV Total energy + Delta-G solvation = -4009.068562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19594 -40.11916 -38.91765 -36.75714 -35.91746 -35.12726 -33.53231 -31.72368 -31.38452 -30.35648 -28.28282 -26.77753 -25.80364 -25.78961 -25.10417 -23.96755 -23.35378 -21.36541 -20.05022 -18.92869 -18.71152 -17.88295 -17.09285 -16.25282 -16.14545 -16.10103 -15.87808 -15.63156 -15.08251 -14.85266 -14.71597 -14.21876 -14.13764 -13.85739 -13.70977 -13.20020 -13.05416 -12.96363 -12.92848 -12.75061 -12.42624 -12.27959 -12.03233 -11.53217 -11.26570 -11.10520 -10.88083 -10.77939 -10.51481 -10.45907 -10.32580 -10.15780 -9.72030 -9.55194 -9.42977 -9.38412 -8.93522 -8.87840 -8.86124 -8.49801 -8.37480 -6.07696 -4.18168 0.50651 0.96902 2.47188 2.53807 2.78898 3.24235 3.26687 3.31368 3.34842 3.71486 3.84360 4.25154 4.38835 4.43311 4.75302 4.84268 4.88910 4.98688 5.13662 5.18166 5.19212 5.37431 5.45975 5.46546 5.52955 5.79839 5.84739 6.05857 6.08922 6.22949 6.26197 6.40116 6.57400 6.63872 6.73943 6.74141 6.87561 6.93812 6.98635 7.00926 7.27941 7.48035 7.50308 7.63663 7.88056 7.93740 8.00969 8.12195 8.31599 8.63100 8.82189 9.47939 10.93717 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001967 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.155101 B =14233.004775 C =14697.739990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.606 5.606 3 C 0.089 3.911 4 C 0.572 3.428 5 O -0.534 6.534 6 C 0.091 3.909 7 C -0.145 4.145 8 C 0.219 3.781 9 N -0.688 5.688 10 C 0.697 3.303 11 O -0.577 6.577 12 N -0.721 5.721 13 C 0.148 3.852 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.895 3.105 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.151 4.151 26 C 0.111 3.889 27 N -0.473 5.473 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.411 0.589 36 H 0.397 0.603 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.005 0.995 45 H 0.261 0.739 46 H 0.154 0.846 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.619 14.380 -5.650 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.338 5.338 3 C -0.053 4.053 4 C 0.359 3.641 5 O -0.411 6.411 6 C -0.047 4.047 7 C -0.169 4.169 8 C 0.113 3.887 9 N -0.336 5.336 10 C 0.397 3.603 11 O -0.455 6.455 12 N -0.375 5.375 13 C 0.025 3.975 14 C 0.055 3.945 15 C -0.189 4.189 16 C -0.188 4.188 17 C -0.546 4.546 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.723 3.277 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.174 4.174 26 C -0.047 4.047 27 N -0.187 5.187 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.166 0.834 35 H 0.247 0.753 36 H 0.233 0.767 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.024 0.976 40 H 0.105 0.895 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.105 0.895 44 H 0.024 0.976 45 H 0.071 0.929 46 H 0.171 0.829 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.882 15.249 -5.257 24.833 hybrid contribution 1.161 -1.560 0.191 1.954 sum -17.721 13.689 -5.066 22.959 Atomic orbital electron populations 1.21684 0.78798 1.02437 1.02456 1.47597 1.06998 1.06879 1.72334 1.22186 0.97060 0.82952 1.03123 1.17919 0.85813 0.83509 0.76872 1.90784 1.68989 1.31285 1.49997 1.20660 0.93753 0.89452 1.00803 1.21762 0.92508 1.00190 1.02431 1.17639 0.89846 0.87156 0.94039 1.42712 1.17040 1.09089 1.64736 1.16041 0.79846 0.85339 0.79073 1.90920 1.72384 1.30017 1.52136 1.45594 1.18472 1.10212 1.63220 1.21729 0.78363 1.00851 0.96529 1.18376 0.94391 0.88129 0.93574 1.21838 0.95393 1.03871 0.97793 1.21835 0.96746 1.03839 0.96417 1.20908 0.98908 0.95990 1.38761 0.92407 1.24882 0.98156 0.95372 0.95103 1.69786 1.37017 1.00138 1.45438 0.86611 0.84178 0.77079 0.79864 1.20254 1.21316 1.20259 1.22460 1.03271 0.92160 0.99481 1.22724 0.88668 0.98356 0.94984 1.68010 1.10633 1.26922 1.13128 0.91915 0.90462 0.92046 0.92046 0.92433 0.88715 0.83377 0.75303 0.76727 0.92479 0.92523 0.97588 0.89509 0.95359 0.95360 0.89534 0.97588 0.92880 0.82854 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.17 59.85 0.61 1.25 16 2 N -0.61 -5.87 3.27 -190.52 -0.62 -6.50 16 3 C 0.09 0.66 9.10 59.85 0.54 1.21 16 4 C 0.57 7.15 7.65 -12.18 -0.09 7.05 16 5 O -0.53 -8.03 16.35 5.35 0.09 -7.94 16 6 C 0.09 1.10 6.56 -83.05 -0.54 0.55 16 7 C -0.14 -1.73 9.58 -38.85 -0.37 -2.10 16 8 C 0.22 2.73 6.31 -83.51 -0.53 2.20 16 9 N -0.69 -8.50 5.35 -14.08 -0.08 -8.57 16 10 C 0.70 11.20 8.32 -86.92 -0.72 10.48 16 11 O -0.58 -11.11 14.10 5.29 0.07 -11.04 16 12 N -0.72 -11.78 4.96 -65.22 -0.32 -12.11 16 13 C 0.15 2.95 4.50 -4.04 -0.02 2.93 16 14 C 0.06 1.24 0.50 -155.67 -0.08 1.16 16 15 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 16 C -0.13 -2.80 8.08 37.15 0.30 -2.50 16 17 C -0.51 -12.82 8.01 -34.44 -0.28 -13.10 16 18 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 19 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.89 -22.99 9.35 55.43 0.52 -22.47 16 21 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.15 -1.82 8.73 -39.15 -0.34 -2.17 16 26 C 0.11 1.11 11.17 -17.62 -0.20 0.91 16 27 N -0.47 -5.03 6.17 -9.88 -0.06 -5.09 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.34 7.72 -51.93 -0.40 -0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 32 H 0.06 0.30 7.80 -51.93 -0.41 -0.11 16 33 H 0.09 0.81 5.80 -51.93 -0.30 0.51 16 34 H 0.15 1.67 7.65 -52.49 -0.40 1.27 16 35 H 0.41 3.84 8.84 -40.82 -0.36 3.48 16 36 H 0.40 5.76 6.18 -40.82 -0.25 5.50 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 40 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 43 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 44 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 45 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 46 H 0.15 2.03 6.53 -52.49 -0.34 1.69 16 47 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -30.38 379.68 -7.94 -38.31 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.72 Total: 7.48 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.51 Total: 6.94 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.57 Total: -54.74 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.16 Total: -18.98 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.38 -7.94 -38.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476178937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds