Wall clock time and date at job start Tue Mar 31 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99744 * 2 1 4 4 C 1.34771 * 119.99996 * 179.97438 * 2 1 3 5 5 O 1.21519 * 119.99969 * 354.74641 * 4 2 1 6 6 C 1.48182 * 119.99944 * 174.74794 * 4 2 1 7 7 C 1.39077 * 119.69001 * 173.20087 * 6 4 2 8 8 C 1.39371 * 118.96552 * 180.27354 * 7 6 4 9 9 N 1.39557 * 120.82631 * 179.70409 * 8 7 6 10 10 C 1.34772 * 119.99903 * 213.21624 * 9 8 7 11 11 O 1.21581 * 120.00186 * 5.42140 * 10 9 8 12 12 N 1.34776 * 120.00017 * 185.41497 * 10 9 8 13 13 C 1.46503 * 120.00220 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47133 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47071 * 299.99453 * 14 13 12 16 16 C 1.52994 * 109.47610 * 59.99525 * 14 13 12 17 17 C 1.50699 * 109.47231 * 179.97438 * 14 13 12 18 18 H 1.08004 * 119.99946 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00340 * 179.97438 * 17 14 13 20 20 N 1.31519 * 120.00004 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00021 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47473 * 59.99674 * 21 19 17 23 23 H 1.48505 * 109.47314 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46752 * 299.99252 * 21 19 17 25 25 C 1.39344 * 118.34390 * 359.44584 * 8 7 6 26 26 C 1.38284 * 119.27239 * 0.55999 * 25 8 7 27 27 N 1.31625 * 120.98416 * 359.70099 * 26 25 8 28 28 H 1.08995 * 109.47472 * 240.00296 * 1 2 3 29 29 H 1.09002 * 109.47122 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47269 * 119.99901 * 1 2 3 31 31 H 1.09006 * 109.46450 * 264.26794 * 3 2 1 32 32 H 1.08995 * 109.47125 * 24.26809 * 3 2 1 33 33 H 1.08996 * 109.46957 * 144.27041 * 3 2 1 34 34 H 1.07998 * 120.52122 * 0.02562 * 7 6 4 35 35 H 0.96996 * 119.99910 * 33.22416 * 9 8 7 36 36 H 0.96997 * 119.99960 * 0.02562 * 12 10 9 37 37 H 1.09010 * 109.46813 * 299.99970 * 13 12 10 38 38 H 1.09002 * 109.47119 * 59.99675 * 13 12 10 39 39 H 1.09003 * 109.47464 * 60.00416 * 15 14 13 40 40 H 1.08996 * 109.47364 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47470 * 300.00560 * 15 14 13 42 42 H 1.09010 * 109.46992 * 60.00023 * 16 14 13 43 43 H 1.09005 * 109.47623 * 179.97438 * 16 14 13 44 44 H 1.08997 * 109.47315 * 300.00249 * 16 14 13 45 45 H 0.96997 * 120.00211 * 180.02562 * 20 19 17 46 46 H 1.08002 * 120.36450 * 180.28455 * 25 8 7 47 47 H 1.08003 * 119.50762 * 179.72382 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5351 -2.2173 0.0974 6 6 3.6160 -1.1699 -0.1169 7 6 4.3162 -2.3630 0.0263 8 6 5.7057 -2.3472 -0.0813 9 7 6.4474 -3.5206 0.0619 10 6 7.6770 -3.4777 0.6120 11 8 8.1007 -2.4355 1.0731 12 7 8.4370 -4.5900 0.6512 13 6 9.7733 -4.5435 1.2497 14 6 10.4183 -5.9284 1.1657 15 6 9.5553 -6.9396 1.9230 16 6 10.5305 -6.3506 -0.3005 17 6 11.7932 -5.8804 1.7808 18 1 12.1695 -4.9546 2.1903 19 6 12.5706 -7.0183 1.8208 20 7 12.1122 -8.1458 1.3225 21 14 14.2746 -6.9589 2.5839 22 1 14.1658 -6.5487 4.0069 23 1 14.9007 -8.3031 2.5022 24 1 15.1124 -5.9778 1.8484 25 6 6.3354 -1.1315 -0.3409 26 6 5.5695 0.0125 -0.4706 27 7 4.2588 -0.0331 -0.3584 28 1 -0.3634 -0.5138 0.8899 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 2.4680 1.5320 -1.0226 32 1 1.5678 2.0518 0.4224 33 1 3.1016 1.1663 0.6001 34 1 3.7918 -3.2866 0.2220 35 1 6.0781 -4.3671 -0.2347 36 1 8.0991 -5.4214 0.2831 37 1 10.3883 -3.8233 0.7099 38 1 9.6934 -4.2423 2.2943 39 1 8.5609 -6.9744 1.4777 40 1 10.0149 -7.9262 1.8635 41 1 9.4752 -6.6389 2.9676 42 1 11.1454 -5.6301 -0.8401 43 1 10.9904 -7.3371 -0.3605 44 1 9.5363 -6.3853 -0.7458 45 1 12.6590 -8.9465 1.3510 46 1 7.4101 -1.0826 -0.4353 47 1 6.0540 0.9575 -0.6674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476178937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:15 Heat of formation + Delta-G solvation = -27.043565 kcal Electronic energy + Delta-G solvation = -28225.422036 eV Core-core repulsion = 24215.514267 eV Total energy + Delta-G solvation = -4009.907769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.18788 -41.22579 -39.91666 -38.33529 -36.80595 -36.23420 -35.12298 -32.98068 -32.57803 -31.59493 -28.91465 -27.59861 -27.55743 -27.43897 -26.79680 -24.88886 -24.32624 -22.54401 -21.04535 -20.58094 -19.94381 -18.89418 -18.01310 -17.76331 -17.23255 -17.08654 -16.92667 -16.68193 -16.61933 -16.13244 -16.02576 -15.33801 -15.12252 -14.97601 -14.73123 -14.67120 -14.53902 -14.04019 -14.00347 -13.57289 -13.40104 -13.22122 -13.18962 -13.08825 -12.70172 -12.69678 -12.62238 -12.28259 -12.13984 -12.09419 -11.55709 -11.47939 -11.45438 -11.19545 -10.71155 -10.43538 -10.38637 -10.32453 -10.11563 -9.68794 -9.60309 -8.01598 -6.17024 -0.42039 0.05357 1.39102 1.45076 1.47207 1.53159 1.58925 1.96265 2.01367 2.46338 2.79812 3.02010 3.11690 3.22422 3.63171 3.81787 3.97786 4.14337 4.36918 4.40096 4.46676 4.52833 4.53301 4.56044 4.65186 4.71347 4.89002 4.92941 4.93368 4.98583 5.06090 5.09484 5.14619 5.20514 5.25190 5.33071 5.52542 5.55379 5.64636 5.67792 5.68366 5.82823 6.15951 6.19651 6.22147 6.43773 6.64167 6.86769 6.88410 7.00177 7.36401 7.50679 8.96989 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001967 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.155101 B =14233.004775 C =14697.739990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.601 5.601 3 C 0.087 3.913 4 C 0.562 3.438 5 O -0.570 6.570 6 C 0.082 3.918 7 C -0.145 4.145 8 C 0.204 3.796 9 N -0.672 5.672 10 C 0.701 3.299 11 O -0.610 6.610 12 N -0.715 5.715 13 C 0.166 3.834 14 C 0.051 3.949 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.526 4.526 18 H 0.047 0.953 19 C 0.027 3.973 20 N -0.899 5.899 21 Si 0.944 3.056 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.160 4.160 26 C 0.120 3.880 27 N -0.462 5.462 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.426 0.574 36 H 0.408 0.592 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.260 0.740 46 H 0.142 0.858 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.951 15.962 -6.221 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.332 5.332 3 C -0.054 4.054 4 C 0.349 3.651 5 O -0.450 6.450 6 C -0.056 4.056 7 C -0.169 4.169 8 C 0.099 3.901 9 N -0.321 5.321 10 C 0.401 3.599 11 O -0.489 6.489 12 N -0.370 5.370 13 C 0.042 3.958 14 C 0.050 3.950 15 C -0.180 4.180 16 C -0.179 4.179 17 C -0.565 4.565 18 H 0.065 0.935 19 C -0.173 4.173 20 N -0.538 5.538 21 Si 0.771 3.229 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.183 4.183 26 C -0.038 4.038 27 N -0.176 5.176 28 H 0.074 0.926 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.265 0.735 36 H 0.246 0.754 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.160 0.840 47 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -20.268 16.848 -5.854 26.998 hybrid contribution 1.496 -1.935 0.351 2.471 sum -18.772 14.913 -5.503 24.598 Atomic orbital electron populations 1.21877 0.77379 1.04577 1.01981 1.47799 1.08116 1.06806 1.70481 1.22295 0.97159 0.82505 1.03459 1.18092 0.86039 0.83934 0.76999 1.90756 1.69591 1.32590 1.52069 1.20773 0.93885 0.89871 1.01055 1.21775 0.92192 1.00549 1.02374 1.17755 0.90035 0.87247 0.95020 1.42412 1.15691 1.10072 1.63942 1.16028 0.80552 0.84510 0.78788 1.90902 1.73392 1.31124 1.53509 1.45255 1.17407 1.10987 1.63332 1.21237 0.79787 0.99068 0.95692 1.18373 0.93389 0.89404 0.93823 1.21684 0.96747 1.02079 0.97464 1.21672 0.98202 1.01931 0.96046 1.21224 1.00686 0.95600 1.38989 0.93468 1.25451 1.00792 0.95329 0.95697 1.69899 1.37666 1.00263 1.45921 0.85834 0.81112 0.76947 0.79007 1.20319 1.21067 1.20187 1.22522 1.02915 0.92859 1.00046 1.23241 0.88270 0.99020 0.93273 1.68137 1.10764 1.26112 1.12618 0.92561 0.87006 0.92399 0.91527 0.89541 0.89779 0.83095 0.73503 0.75425 0.93677 0.94087 0.94420 0.91984 0.96309 0.96109 0.92047 0.94408 0.93087 0.84024 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.17 127.77 1.30 2.36 16 2 N -0.60 -10.59 3.27 -874.96 -2.86 -13.46 16 3 C 0.09 1.06 9.10 127.77 1.16 2.22 16 4 C 0.56 13.61 7.65 86.89 0.66 14.28 16 5 O -0.57 -17.15 16.35 -3.78 -0.06 -17.21 16 6 C 0.08 1.88 6.56 41.84 0.27 2.15 16 7 C -0.14 -3.34 9.58 22.74 0.22 -3.12 16 8 C 0.20 4.88 6.31 38.45 0.24 5.13 16 9 N -0.67 -15.77 5.35 -316.74 -1.70 -17.46 16 10 C 0.70 21.86 8.32 179.06 1.49 23.35 16 11 O -0.61 -23.27 14.10 -3.97 -0.06 -23.32 16 12 N -0.72 -22.49 4.96 -478.53 -2.37 -24.86 16 13 C 0.17 6.59 4.50 86.38 0.39 6.98 16 14 C 0.05 2.24 0.50 -52.93 -0.03 2.21 16 15 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 16 C -0.12 -5.10 8.08 71.98 0.58 -4.51 16 17 C -0.53 -26.87 8.01 25.60 0.21 -26.66 16 18 H 0.05 2.45 7.74 -2.91 -0.02 2.42 16 19 C 0.03 1.40 5.15 84.65 0.44 1.83 16 20 N -0.90 -46.96 9.35 21.45 0.20 -46.75 16 21 Si 0.94 41.77 29.54 68.60 2.03 43.80 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 C -0.16 -3.70 8.73 22.55 0.20 -3.50 16 26 C 0.12 2.15 11.17 84.73 0.95 3.09 16 27 N -0.46 -8.95 6.17 -185.17 -1.14 -10.10 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.61 7.72 -2.39 -0.02 0.60 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.77 7.98 -2.38 -0.02 0.75 16 32 H 0.09 0.57 7.80 -2.39 -0.02 0.55 16 33 H 0.08 1.24 5.80 -2.39 -0.01 1.23 16 34 H 0.15 3.33 7.65 -2.91 -0.02 3.31 16 35 H 0.43 7.23 8.84 -92.71 -0.82 6.41 16 36 H 0.41 10.94 6.18 -92.71 -0.57 10.36 16 37 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.32 6.86 -2.39 -0.02 1.30 16 40 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.06 2.93 6.07 -2.38 -0.01 2.92 16 44 H 0.04 1.31 6.86 -2.39 -0.02 1.29 16 45 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 46 H 0.14 3.67 6.53 -2.91 -0.02 3.65 16 47 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -66.15 379.68 2.31 -63.83 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.38 Total: 24.35 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 8.66 Total: 21.19 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -7.88 Total: -112.63 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -0.12 Total: -40.54 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -66.15 2.31 -63.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476178937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.789 kcal (2) G-P(sol) polarization free energy of solvation -66.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds