Wall clock time and date at job start Tue Mar 31 2020 17:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00399 * 2 1 4 4 C 1.53001 * 109.47242 * 124.99994 * 3 2 1 5 5 C 1.53000 * 109.47244 * 60.00142 * 4 3 2 6 6 C 1.53004 * 109.47020 * 300.00114 * 4 3 2 7 7 C 1.50697 * 109.47382 * 180.02562 * 4 3 2 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 4 3 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 4 3 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.07999 * 119.99458 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.99866 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99577 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46835 * 5.00392 * 3 2 1 32 32 H 1.08999 * 109.47506 * 244.99789 * 3 2 1 33 33 H 1.09001 * 109.47039 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47196 * 300.00371 * 5 4 3 35 35 H 1.08989 * 109.46970 * 59.99891 * 5 4 3 36 36 H 1.09000 * 109.47161 * 300.00277 * 6 4 3 37 37 H 1.09000 * 109.46810 * 60.00002 * 6 4 3 38 38 H 1.09005 * 109.46984 * 179.97438 * 6 4 3 39 39 H 0.96998 * 119.99587 * 359.97438 * 9 7 4 40 40 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 41 41 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 42 42 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 43 43 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 44 44 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 45 45 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 46 46 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 47 47 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 4.0246 0.1727 1.0559 6 6 2.2521 1.1961 2.4890 7 6 3.7883 2.6382 1.1820 8 8 3.5699 3.4646 0.3216 9 7 4.7054 2.8869 2.1379 10 6 5.4379 4.1555 2.1380 11 6 6.3947 4.1831 3.3019 12 7 5.9848 4.6669 4.4572 13 6 6.8008 4.7061 5.5041 14 8 6.3750 5.2049 6.6900 15 6 8.1008 4.2217 5.3656 16 6 8.4897 3.7287 4.1347 17 6 9.8857 3.1986 3.9317 18 7 9.8899 1.7467 4.1270 19 6 11.0560 1.0413 3.9934 20 1 11.9717 1.5546 3.7398 21 6 11.0601 -0.3344 4.1790 22 7 12.1807 -1.0125 4.0501 23 14 9.4748 -1.2235 4.6103 24 1 8.7876 -1.6435 3.3626 25 1 9.7865 -2.4211 5.4310 26 1 8.5901 -0.3124 5.3801 27 7 7.6183 3.7232 3.1363 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 4.7164 0.1924 1.8980 34 1 3.4796 -0.7712 1.0559 35 1 4.5823 0.2702 0.1246 36 1 1.5472 2.0227 2.5785 37 1 1.7071 0.2522 2.4889 38 1 2.9444 1.2156 3.3308 39 1 4.8803 2.2258 2.8258 40 1 4.7330 4.9821 2.2279 41 1 5.9953 4.2532 1.2065 42 1 5.9804 4.5443 7.2757 43 1 8.7880 4.2352 6.1987 44 1 10.5593 3.6639 4.6513 45 1 10.2187 3.4301 2.9199 46 1 9.0667 1.2850 4.3509 47 1 12.1835 -1.9739 4.1794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479607958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:09 Heat of formation + Delta-G solvation = 1.025013 kcal Electronic energy + Delta-G solvation = -28524.400198 eV Core-core repulsion = 24515.709574 eV Total energy + Delta-G solvation = -4008.690624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43672 -40.39543 -37.96620 -36.94972 -35.84748 -34.83011 -33.32288 -33.05556 -31.85537 -31.00922 -27.86880 -27.66154 -27.00778 -26.84860 -23.73979 -23.33581 -22.51132 -21.51770 -20.40041 -19.26593 -18.94185 -18.18298 -17.58201 -17.14466 -16.56167 -16.00845 -15.64441 -15.49641 -15.25936 -14.97536 -14.70000 -14.32647 -14.21238 -13.94041 -13.75317 -13.40308 -13.22275 -13.06981 -12.82189 -12.71780 -12.62313 -12.38450 -12.31796 -12.16205 -11.96393 -11.46952 -11.42023 -11.23194 -11.12977 -11.00394 -10.80509 -10.49697 -10.32213 -9.97785 -9.73534 -9.61474 -9.52508 -9.36991 -9.30073 -9.07377 -7.42894 -5.89484 -3.27759 0.59332 0.82050 1.99284 2.47140 2.79306 3.16448 3.24028 3.28662 3.34439 3.54209 3.73518 4.17575 4.31578 4.41287 4.46406 4.56358 4.72102 4.82945 4.89579 4.93912 4.96647 5.13635 5.20473 5.29913 5.37641 5.40758 5.43381 5.46188 5.50159 5.52022 5.57320 5.59120 5.69290 5.78611 5.90488 5.97292 6.01854 6.11555 6.20437 6.33461 6.36237 6.49836 6.84942 7.13161 7.23825 7.81211 7.92634 7.99965 8.27472 9.03048 9.75276 9.92546 11.28178 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.003475 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.654261 B = 8055.726743 C =10166.068985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.070 4.070 4 C -0.075 4.075 5 C -0.146 4.146 6 C -0.140 4.140 7 C 0.529 3.471 8 O -0.538 6.538 9 N -0.718 5.718 10 C 0.195 3.805 11 C 0.316 3.684 12 N -0.531 5.531 13 C 0.355 3.645 14 O -0.475 6.475 15 C -0.218 4.218 16 C 0.194 3.806 17 C 0.201 3.799 18 N -0.745 5.745 19 C -0.249 4.249 20 H 0.095 0.905 21 C 0.011 3.989 22 N -0.928 5.928 23 Si 0.884 3.116 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.281 1.281 27 N -0.493 5.493 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.402 0.598 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.407 0.593 43 H 0.158 0.842 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.362 0.638 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.150 6.108 -0.515 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C -0.108 4.108 4 C -0.078 4.078 5 C -0.203 4.203 6 C -0.198 4.198 7 C 0.315 3.685 8 O -0.414 6.414 9 N -0.371 5.371 10 C 0.070 3.930 11 C 0.047 3.953 12 N -0.257 5.257 13 C 0.167 3.833 14 O -0.283 6.283 15 C -0.242 4.242 16 C 0.049 3.951 17 C 0.074 3.926 18 N -0.391 5.391 19 C -0.378 4.378 20 H 0.113 0.887 21 C -0.186 4.186 22 N -0.575 5.575 23 Si 0.715 3.285 24 H -0.208 1.208 25 H -0.215 1.215 26 H -0.208 1.208 27 N -0.209 5.209 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.237 0.763 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.266 0.734 43 H 0.176 0.824 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.194 0.806 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.427 7.202 -2.069 22.700 hybrid contribution -0.527 -1.383 1.826 2.350 sum -21.954 5.820 -0.243 22.714 Atomic orbital electron populations 1.23851 0.95926 1.01772 1.01729 1.22974 0.95967 0.98406 0.99277 1.20598 0.97365 0.95548 0.97277 1.20751 0.96076 0.92958 0.98030 1.21949 0.98287 0.97008 1.03078 1.21884 1.00089 1.03100 0.94678 1.20525 0.78987 0.88532 0.80460 1.90702 1.65710 1.47982 1.36990 1.45821 1.40720 1.19311 1.31259 1.19875 0.91872 0.87511 0.93727 1.22772 0.90270 0.91147 0.91153 1.67695 1.39389 1.17942 1.00650 1.19394 0.88650 0.88879 0.86348 1.84719 1.81246 1.38268 1.24037 1.23021 0.98195 1.01790 1.01238 1.22251 0.96849 0.88862 0.87131 1.19696 0.85913 0.86020 1.01013 1.42493 1.08911 1.01033 1.86683 1.19003 0.87464 0.90142 1.41228 0.88728 1.24640 0.96468 0.96085 1.01391 1.69687 1.24975 1.07288 1.55553 0.86564 0.84112 0.79604 0.78261 1.20830 1.21488 1.20784 1.68212 1.02446 1.16257 1.33991 0.88633 0.88581 0.87119 0.90681 0.90042 0.91956 0.90955 0.91556 0.91987 0.90979 0.92259 0.76350 0.88702 0.88285 0.73364 0.82383 0.92861 0.92480 0.80586 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.40 14.32 29.01 0.42 -0.98 16 2 C -0.15 -1.15 7.65 -36.03 -0.28 -1.43 16 3 C -0.07 -0.65 4.02 -27.88 -0.11 -0.77 16 4 C -0.07 -0.71 0.64 -155.66 -0.10 -0.81 16 5 C -0.15 -1.32 8.11 37.16 0.30 -1.02 16 6 C -0.14 -1.12 8.12 37.16 0.30 -0.81 16 7 C 0.53 6.41 6.48 -10.98 -0.07 6.34 16 8 O -0.54 -8.16 15.98 5.56 0.09 -8.07 16 9 N -0.72 -8.35 5.33 -61.48 -0.33 -8.67 16 10 C 0.20 2.44 6.10 -5.20 -0.03 2.41 16 11 C 0.32 4.44 7.01 -157.23 -1.10 3.34 16 12 N -0.53 -7.33 10.36 -10.78 -0.11 -7.44 16 13 C 0.35 4.58 7.83 -16.70 -0.13 4.45 16 14 O -0.48 -4.94 13.58 -18.25 -0.25 -5.18 16 15 C -0.22 -2.95 9.79 -39.16 -0.38 -3.33 16 16 C 0.19 3.08 6.18 -82.32 -0.51 2.57 16 17 C 0.20 3.65 6.61 -5.20 -0.03 3.62 16 18 N -0.74 -16.80 5.40 -61.08 -0.33 -17.13 16 19 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 21 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 22 N -0.93 -28.17 13.97 55.49 0.78 -27.39 16 23 Si 0.88 21.21 27.74 -169.99 -4.71 16.50 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 27 N -0.49 -7.85 10.27 -7.06 -0.07 -7.92 16 28 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.11 0.78 6.81 -52.48 -0.36 0.42 16 31 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 32 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 34 H 0.07 0.55 6.53 -51.93 -0.34 0.21 16 35 H 0.07 0.64 8.14 -51.94 -0.42 0.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.51 7.22 -51.93 -0.37 0.14 16 38 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 39 H 0.40 4.33 7.30 -40.82 -0.30 4.04 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.41 2.17 9.06 45.56 0.41 2.58 16 43 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 44 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.36 8.11 5.52 -40.82 -0.23 7.88 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -33.59 394.71 -7.15 -40.73 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.17 Total: 11.72 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.99 Total: 6.91 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -0.07 Total: -68.55 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.16 Total: -13.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.59 -7.15 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479607958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.760 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds