Wall clock time and date at job start Tue Mar 31 2020 17:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 120.00399 * 2 1 4 4 C 1.53001 * 109.47242 * 124.99994 * 3 2 1 5 5 C 1.53000 * 109.47244 * 60.00142 * 4 3 2 6 6 C 1.53004 * 109.47020 * 300.00114 * 4 3 2 7 7 C 1.50697 * 109.47382 * 180.02562 * 4 3 2 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 4 3 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 4 3 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 4 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.07999 * 119.99458 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.99866 * 179.97438 * 1 2 3 30 30 H 1.08008 * 119.99577 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.46835 * 5.00392 * 3 2 1 32 32 H 1.08999 * 109.47506 * 244.99789 * 3 2 1 33 33 H 1.09001 * 109.47039 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47196 * 300.00371 * 5 4 3 35 35 H 1.08989 * 109.46970 * 59.99891 * 5 4 3 36 36 H 1.09000 * 109.47161 * 300.00277 * 6 4 3 37 37 H 1.09000 * 109.46810 * 60.00002 * 6 4 3 38 38 H 1.09005 * 109.46984 * 179.97438 * 6 4 3 39 39 H 0.96998 * 119.99587 * 359.97438 * 9 7 4 40 40 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 41 41 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 42 42 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 43 43 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 44 44 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 45 45 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 46 46 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 47 47 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 4.0246 0.1727 1.0559 6 6 2.2521 1.1961 2.4890 7 6 3.7883 2.6382 1.1820 8 8 3.5699 3.4646 0.3216 9 7 4.7054 2.8869 2.1379 10 6 5.4379 4.1555 2.1380 11 6 6.3947 4.1831 3.3019 12 7 5.9848 4.6669 4.4572 13 6 6.8008 4.7061 5.5041 14 8 6.3750 5.2049 6.6900 15 6 8.1008 4.2217 5.3656 16 6 8.4897 3.7287 4.1347 17 6 9.8857 3.1986 3.9317 18 7 9.8899 1.7467 4.1270 19 6 11.0560 1.0413 3.9934 20 1 11.9717 1.5546 3.7398 21 6 11.0601 -0.3344 4.1790 22 7 12.1807 -1.0125 4.0501 23 14 9.4748 -1.2235 4.6103 24 1 8.7876 -1.6435 3.3626 25 1 9.7865 -2.4211 5.4310 26 1 8.5901 -0.3124 5.3801 27 7 7.6183 3.7232 3.1363 28 1 -0.5399 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4025 -0.9313 33 1 4.7164 0.1924 1.8980 34 1 3.4796 -0.7712 1.0559 35 1 4.5823 0.2702 0.1246 36 1 1.5472 2.0227 2.5785 37 1 1.7071 0.2522 2.4889 38 1 2.9444 1.2156 3.3308 39 1 4.8803 2.2258 2.8258 40 1 4.7330 4.9821 2.2279 41 1 5.9953 4.2532 1.2065 42 1 5.9804 4.5443 7.2757 43 1 8.7880 4.2352 6.1987 44 1 10.5593 3.6639 4.6513 45 1 10.2187 3.4301 2.9199 46 1 9.0667 1.2850 4.3509 47 1 12.1835 -1.9739 4.1794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479607958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:08 Heat of formation + Delta-G solvation = -26.167331 kcal Electronic energy + Delta-G solvation = -28525.579346 eV Core-core repulsion = 24515.709574 eV Total energy + Delta-G solvation = -4009.869773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.51764 -41.32068 -38.87914 -37.77803 -37.25760 -36.04707 -34.71005 -33.79353 -33.28828 -32.50868 -28.94790 -28.49008 -28.32629 -27.55498 -24.95248 -24.63299 -23.67525 -22.87396 -21.20309 -20.24166 -19.85067 -19.77416 -18.84601 -18.00289 -17.53190 -17.03760 -16.78505 -16.50364 -16.43976 -16.09022 -15.98870 -15.59749 -15.14508 -15.02376 -14.77426 -14.53283 -14.50618 -14.22592 -14.01986 -13.92743 -13.56917 -13.38398 -13.31697 -13.12848 -13.03146 -12.86711 -12.63836 -12.19564 -12.12644 -11.88043 -11.85352 -11.84756 -11.81734 -11.63144 -11.06950 -10.95527 -10.60025 -10.47546 -10.30516 -10.16832 -9.39480 -8.04373 -5.40665 -0.46513 -0.27865 1.33897 1.40007 1.41028 1.46403 1.52119 1.83779 2.21270 2.45872 2.47439 2.65219 3.05192 3.27653 3.49791 3.69277 3.72230 3.74376 3.83020 3.84724 4.07480 4.14166 4.20644 4.25609 4.33745 4.42929 4.52784 4.66884 4.75729 4.76645 4.77397 4.83273 4.86597 4.91277 5.05518 5.07198 5.10949 5.17546 5.24798 5.28790 5.71396 5.76159 5.78342 5.92355 6.16951 6.31556 6.44539 6.83330 7.00971 7.05612 7.72650 7.92048 9.16357 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.003475 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.654261 B = 8055.726743 C =10166.068985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C -0.067 4.067 4 C -0.069 4.069 5 C -0.145 4.145 6 C -0.136 4.136 7 C 0.526 3.474 8 O -0.573 6.573 9 N -0.712 5.712 10 C 0.199 3.801 11 C 0.319 3.681 12 N -0.534 5.534 13 C 0.366 3.634 14 O -0.473 6.473 15 C -0.210 4.210 16 C 0.180 3.820 17 C 0.201 3.799 18 N -0.746 5.746 19 C -0.236 4.236 20 H 0.065 0.935 21 C -0.058 4.058 22 N -0.979 5.979 23 Si 0.953 3.047 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.253 1.253 27 N -0.515 5.515 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.408 0.592 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.431 0.569 43 H 0.178 0.822 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.365 0.635 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.791 5.974 1.128 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.174 4.174 3 C -0.105 4.105 4 C -0.072 4.072 5 C -0.202 4.202 6 C -0.193 4.193 7 C 0.314 3.686 8 O -0.452 6.452 9 N -0.365 5.365 10 C 0.073 3.927 11 C 0.050 3.950 12 N -0.260 5.260 13 C 0.178 3.822 14 O -0.285 6.285 15 C -0.234 4.234 16 C 0.036 3.964 17 C 0.075 3.925 18 N -0.392 5.392 19 C -0.366 4.366 20 H 0.083 0.917 21 C -0.250 4.250 22 N -0.629 5.629 23 Si 0.780 3.220 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.178 1.178 27 N -0.232 5.232 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.295 0.705 43 H 0.196 0.804 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.198 0.802 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -24.100 7.100 -0.387 25.127 hybrid contribution 0.303 -1.181 1.322 1.798 sum -23.797 5.919 0.935 24.540 Atomic orbital electron populations 1.24008 0.95775 1.02484 1.00377 1.22926 0.96161 0.97816 1.00455 1.20532 0.97103 0.96315 0.96544 1.20753 0.96006 0.91397 0.99034 1.21965 0.98243 0.97645 1.02388 1.21875 1.00012 1.03721 0.93736 1.21082 0.78718 0.89111 0.79729 1.90683 1.66829 1.49364 1.38324 1.45791 1.40309 1.19091 1.31270 1.19810 0.91718 0.88142 0.92995 1.22837 0.89759 0.90869 0.91582 1.67775 1.39569 1.17916 1.00779 1.19447 0.88290 0.87591 0.86908 1.84689 1.81332 1.39117 1.23317 1.23125 0.98771 1.00844 1.00645 1.21848 0.95768 0.90513 0.88311 1.19710 0.88291 0.83706 1.00796 1.42418 1.07460 1.02809 1.86547 1.18977 0.88018 0.90410 1.39210 0.91701 1.25457 1.00051 0.97102 1.02352 1.69867 1.27701 1.07438 1.57884 0.85451 0.80099 0.78293 0.78174 1.20573 1.21957 1.17798 1.68128 1.03222 1.17268 1.34599 0.88709 0.87109 0.86065 0.91675 0.91634 0.92084 0.89033 0.92716 0.92280 0.89595 0.91651 0.75653 0.88283 0.89095 0.70518 0.80432 0.91222 0.93532 0.80248 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.32 14.32 67.78 0.97 -1.35 16 2 C -0.16 -2.14 7.65 25.64 0.20 -1.95 16 3 C -0.07 -1.21 4.02 29.85 0.12 -1.09 16 4 C -0.07 -1.22 0.64 -52.93 -0.03 -1.25 16 5 C -0.15 -2.40 8.11 71.98 0.58 -1.82 16 6 C -0.14 -1.88 8.12 71.98 0.58 -1.30 16 7 C 0.53 12.53 6.48 87.66 0.57 13.10 16 8 O -0.57 -17.63 15.98 -3.03 -0.05 -17.68 16 9 N -0.71 -15.88 5.33 -466.81 -2.49 -18.37 16 10 C 0.20 4.84 6.10 85.63 0.52 5.36 16 11 C 0.32 8.49 7.01 138.76 0.97 9.46 16 12 N -0.53 -13.47 10.36 -300.69 -3.12 -16.58 16 13 C 0.37 8.31 7.83 84.83 0.66 8.97 16 14 O -0.47 -8.04 13.58 -88.22 -1.20 -9.24 16 15 C -0.21 -5.06 9.79 22.54 0.22 -4.84 16 16 C 0.18 5.40 6.18 42.44 0.26 5.66 16 17 C 0.20 7.13 6.61 85.63 0.57 7.70 16 18 N -0.75 -32.87 5.40 -347.17 -1.87 -34.74 16 19 C -0.24 -12.81 10.47 84.04 0.88 -11.93 16 20 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 21 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16 22 N -0.98 -60.74 13.97 21.65 0.30 -60.44 16 23 Si 0.95 43.27 27.74 68.60 1.90 45.17 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 26 H -0.25 -10.19 6.52 99.48 0.65 -9.54 16 27 N -0.52 -15.81 10.27 -176.24 -1.81 -17.62 16 28 H 0.09 1.17 7.84 -2.91 -0.02 1.14 16 29 H 0.11 1.04 8.06 -2.91 -0.02 1.02 16 30 H 0.12 1.41 6.81 -2.91 -0.02 1.39 16 31 H 0.06 1.28 7.75 -2.39 -0.02 1.26 16 32 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.06 1.03 7.56 -2.39 -0.02 1.01 16 34 H 0.09 1.16 6.53 -2.39 -0.02 1.14 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.97 7.22 -2.39 -0.02 0.95 16 38 H 0.06 0.83 7.57 -2.38 -0.02 0.81 16 39 H 0.41 8.13 7.30 -92.71 -0.68 7.46 16 40 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.43 2.77 9.06 -74.06 -0.67 2.10 16 43 H 0.18 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.07 2.26 8.06 -2.38 -0.02 2.24 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.36 15.56 5.52 -92.71 -0.51 15.04 16 47 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -72.96 394.71 -1.69 -74.65 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.90 Total: 32.92 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 7.55 Total: 21.93 kcal Atomic # 7 Polarization: -138.76 SS G_CDS: -8.99 Total: -147.75 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.25 Total: -26.92 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.90 Total: 45.17 kcal Total: -72.96 -1.69 -74.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479607958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.478 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds