Wall clock time and date at job start Tue Mar 31 2020 17:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99991 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99749 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46973 * 90.00757 * 13 11 9 15 15 H 1.48504 * 109.47082 * 210.00012 * 13 11 9 16 16 H 1.48495 * 109.47365 * 330.00420 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21517 * 120.00111 * 359.97438 * 18 17 5 20 20 C 1.48171 * 120.00170 * 179.97438 * 18 17 5 21 21 C 1.39250 * 119.65724 * 179.72419 * 20 18 17 22 22 C 1.39753 * 118.90115 * 179.75854 * 21 20 18 23 23 C 1.48140 * 120.88978 * 180.28841 * 22 21 20 24 24 N 1.34774 * 120.00155 * 180.22917 * 23 22 21 25 25 O 1.21517 * 120.00143 * 0.22579 * 23 22 21 26 26 C 1.39812 * 118.22291 * 0.50800 * 22 21 20 27 27 C 1.38499 * 119.18655 * 359.75807 * 26 22 21 28 28 N 1.31467 * 121.03987 * 359.97138 * 27 26 22 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 39 39 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 40 40 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 41 41 H 0.97001 * 120.00133 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 43 43 H 1.07999 * 120.54973 * 0.02562 * 21 20 18 44 44 H 0.97001 * 120.00208 * 0.02562 * 24 23 22 45 45 H 0.96998 * 120.00275 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.40811 * 179.77087 * 26 22 21 47 47 H 1.08003 * 119.48098 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 1.6010 -0.5789 -7.2603 13 14 2.9074 -2.6034 -5.8909 14 1 1.9685 -3.7481 -5.7746 15 1 3.7697 -2.7900 -7.0854 16 1 3.7556 -2.5333 -4.6741 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2439 -2.7712 0.0234 20 6 1.7342 -4.4534 -0.5794 21 6 2.4422 -5.4345 0.1099 22 6 1.9591 -6.7459 0.1040 23 6 2.6737 -7.8229 0.8279 24 7 2.1943 -9.0823 0.8064 25 8 3.6922 -7.5709 1.4408 26 6 0.7858 -7.0151 -0.6070 27 6 0.1461 -5.9814 -1.2707 28 7 0.6248 -4.7574 -1.2404 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 0.4437 0.0782 -2.4548 39 1 1.9647 0.9986 -2.5444 40 1 2.4217 -1.5804 -3.6010 41 1 1.8582 -1.0795 -8.0503 42 1 0.7412 -2.3303 -1.7311 43 1 3.3474 -5.1854 0.6438 44 1 1.3815 -9.2837 0.3168 45 1 2.6624 -9.7876 1.2801 46 1 0.3832 -8.0167 -0.6383 47 1 -0.7608 -6.1839 -1.8211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486424103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:31 Heat of formation + Delta-G solvation = -25.666461 kcal Electronic energy + Delta-G solvation = -29512.482451 eV Core-core repulsion = 25502.634397 eV Total energy + Delta-G solvation = -4009.848053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17142 -40.05081 -39.09514 -37.41329 -34.59927 -34.48925 -33.50589 -32.59697 -31.71907 -31.19889 -28.17347 -27.14631 -26.87855 -25.57248 -24.55596 -23.38620 -22.15187 -21.30148 -20.42614 -18.96686 -18.65253 -17.80127 -17.60241 -17.06363 -16.17988 -16.09024 -15.81028 -15.45400 -15.31032 -14.98329 -14.65767 -14.27473 -14.17507 -14.13441 -13.91211 -13.62635 -13.29698 -13.03872 -12.77192 -12.41792 -12.24662 -11.99973 -11.85015 -11.53304 -11.40363 -11.21082 -10.86133 -10.84237 -10.75132 -10.58389 -10.37323 -10.32864 -10.24452 -10.24057 -10.01052 -9.71732 -9.60649 -9.57738 -8.90830 -8.71798 -7.24066 -5.77856 -3.13195 0.11734 0.52322 2.27862 2.80366 2.84213 3.19316 3.37088 3.42989 3.45009 3.65582 3.93105 4.12540 4.33777 4.48076 4.59012 4.61106 4.82219 4.92494 5.01690 5.13195 5.27436 5.38428 5.45334 5.51242 5.55148 5.62491 5.73651 5.81107 5.86903 5.88191 6.01271 6.08901 6.09780 6.12601 6.23451 6.27340 6.36772 6.39836 6.45389 6.56486 6.66864 6.73029 6.83731 7.33118 7.68317 7.74771 7.97780 8.30586 8.41043 9.19994 9.92622 10.11989 11.40453 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.004179 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.151955 B = 6698.910771 C = 8742.659187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.141 4.141 4 C -0.131 4.131 5 C 0.142 3.858 6 H 0.090 0.910 7 C 0.146 3.854 8 N -0.755 5.755 9 C -0.243 4.243 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.879 3.121 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 N -0.689 5.689 18 C 0.567 3.433 19 O -0.528 6.528 20 C 0.085 3.915 21 C -0.057 4.057 22 C -0.102 4.102 23 C 0.566 3.434 24 N -0.847 5.847 25 O -0.525 6.525 26 C -0.124 4.124 27 C 0.100 3.900 28 N -0.434 5.434 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.045 0.955 40 H 0.362 0.638 41 H 0.259 0.741 42 H 0.415 0.585 43 H 0.162 0.838 44 H 0.402 0.598 45 H 0.409 0.591 46 H 0.144 0.856 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 -13.707 18.432 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.188 4.188 5 C 0.037 3.963 6 H 0.108 0.892 7 C 0.019 3.981 8 N -0.401 5.401 9 C -0.373 4.373 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.581 5.581 13 Si 0.710 3.290 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.204 1.204 17 N -0.339 5.339 18 C 0.350 3.650 19 O -0.405 6.405 20 C -0.054 4.054 21 C -0.079 4.079 22 C -0.113 4.113 23 C 0.351 3.649 24 N -0.412 5.412 25 O -0.400 6.400 26 C -0.145 4.145 27 C -0.059 4.059 28 N -0.146 5.146 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.251 0.749 43 H 0.179 0.821 44 H 0.232 0.768 45 H 0.240 0.760 46 H 0.162 0.838 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.533 -12.294 18.575 22.731 hybrid contribution 0.433 -2.550 -0.026 2.587 sum -4.100 -14.845 18.549 24.109 Atomic orbital electron populations 1.21929 0.94462 1.01787 1.01837 1.20888 0.96047 0.95718 0.95029 1.21893 1.01222 0.94773 1.02018 1.21898 1.01680 0.99524 0.95698 1.21466 1.00001 0.79765 0.95035 0.89240 1.21088 0.98100 0.94682 0.84218 1.42715 1.67661 1.27408 1.02294 1.19039 1.29410 1.07141 0.81669 0.89074 1.24621 1.00592 0.98441 0.95118 1.69693 1.51269 1.40217 0.96905 0.86618 0.80421 0.85049 0.76917 1.21079 1.21717 1.20433 1.45856 1.29041 1.08123 1.50840 1.17686 0.83837 0.83550 0.79882 1.90803 1.24302 1.81440 1.43905 1.21353 0.92466 0.95347 0.96227 1.22258 0.99879 0.90661 0.95081 1.20248 0.96519 0.94493 1.00060 1.18093 0.84042 0.82793 0.80001 1.43681 1.31150 1.09829 1.56506 1.90871 1.23988 1.82489 1.42654 1.22534 0.94500 1.01382 0.96084 1.22867 0.99547 0.87053 0.96463 1.67523 1.10692 1.22342 1.14081 0.91688 0.93064 0.92810 0.92743 0.92499 0.91695 0.93156 0.91883 0.93744 0.94356 0.93685 0.80500 0.93070 0.74851 0.82051 0.76824 0.75956 0.83831 0.81076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 7.97 37.16 0.30 -1.46 16 2 C -0.08 -1.01 0.62 -154.51 -0.10 -1.10 16 3 C -0.14 -1.73 8.12 37.15 0.30 -1.43 16 4 C -0.13 -1.78 7.00 37.16 0.26 -1.52 16 5 C 0.14 2.29 1.69 -67.93 -0.11 2.17 16 6 H 0.09 1.61 7.57 -51.93 -0.39 1.22 16 7 C 0.15 2.72 5.10 -4.04 -0.02 2.70 16 8 N -0.75 -17.74 5.24 -59.90 -0.31 -18.05 16 9 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 10 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 13 Si 0.88 22.61 27.73 -169.99 -4.71 17.90 16 14 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 16 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 17 N -0.69 -10.97 3.63 -54.64 -0.20 -11.16 16 18 C 0.57 9.21 6.16 -12.18 -0.08 9.13 16 19 O -0.53 -9.53 13.44 5.35 0.07 -9.46 16 20 C 0.08 1.21 6.75 -83.05 -0.56 0.64 16 21 C -0.06 -0.75 9.20 -38.64 -0.36 -1.11 16 22 C -0.10 -1.04 5.91 -104.68 -0.62 -1.65 16 23 C 0.57 5.66 8.07 -12.20 -0.10 5.57 16 24 N -0.85 -4.23 8.83 30.60 0.27 -3.96 16 25 O -0.52 -7.52 17.28 5.35 0.09 -7.43 16 26 C -0.12 -0.89 9.62 -38.90 -0.37 -1.26 16 27 C 0.10 0.90 11.17 -17.61 -0.20 0.70 16 28 N -0.43 -5.58 9.51 -9.85 -0.09 -5.68 16 29 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.67 7.60 -51.93 -0.39 0.27 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 35 H 0.05 0.73 5.77 -51.93 -0.30 0.43 16 36 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.04 0.70 6.17 -51.93 -0.32 0.38 16 39 H 0.05 0.84 6.71 -51.93 -0.35 0.50 16 40 H 0.36 8.64 5.20 -40.82 -0.21 8.43 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.41 6.58 7.93 -40.82 -0.32 6.25 16 43 H 0.16 2.29 7.33 -52.49 -0.38 1.91 16 44 H 0.40 0.74 6.97 -40.82 -0.28 0.45 16 45 H 0.41 1.54 8.93 -40.82 -0.36 1.18 16 46 H 0.14 0.37 6.53 -52.49 -0.34 0.02 16 47 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -36.33 377.80 -6.75 -43.09 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.43 Total: 12.93 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.90 Total: 4.59 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: 0.44 Total: -67.31 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.16 Total: -16.89 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.33 -6.75 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486424103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.420 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds