Wall clock time and date at job start Tue Mar 31 2020 17:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09000 * 109.47486 * 180.02562 * 5 2 1 7 7 C 1.53006 * 109.46997 * 60.00177 * 5 2 1 8 8 N 1.46499 * 109.47053 * 185.00474 * 7 5 2 9 9 C 1.36942 * 119.99744 * 180.02562 * 8 7 5 10 10 H 1.08004 * 119.99875 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31615 * 119.99991 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 119.99749 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.46973 * 90.00757 * 13 11 9 15 15 H 1.48504 * 109.47082 * 210.00012 * 13 11 9 16 16 H 1.48495 * 109.47365 * 330.00420 * 13 11 9 17 17 N 1.46505 * 109.47266 * 300.00318 * 5 2 1 18 18 C 1.34767 * 119.99959 * 274.99643 * 17 5 2 19 19 O 1.21517 * 120.00111 * 359.97438 * 18 17 5 20 20 C 1.48171 * 120.00170 * 179.97438 * 18 17 5 21 21 C 1.39250 * 119.65724 * 179.72419 * 20 18 17 22 22 C 1.39753 * 118.90115 * 179.75854 * 21 20 18 23 23 C 1.48140 * 120.88978 * 180.28841 * 22 21 20 24 24 N 1.34774 * 120.00155 * 180.22917 * 23 22 21 25 25 O 1.21517 * 120.00143 * 0.22579 * 23 22 21 26 26 C 1.39812 * 118.22291 * 0.50800 * 22 21 20 27 27 C 1.38499 * 119.18655 * 359.75807 * 26 22 21 28 28 N 1.31467 * 121.03987 * 359.97138 * 27 26 22 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.09005 * 109.46600 * 305.00222 * 7 5 2 39 39 H 1.09001 * 109.47164 * 64.99887 * 7 5 2 40 40 H 0.96996 * 120.00184 * 359.97438 * 8 7 5 41 41 H 0.97001 * 120.00133 * 179.97438 * 12 11 9 42 42 H 0.96998 * 119.99791 * 94.99814 * 17 5 2 43 43 H 1.07999 * 120.54973 * 0.02562 * 21 20 18 44 44 H 0.97001 * 120.00208 * 0.02562 * 24 23 22 45 45 H 0.96998 * 120.00275 * 179.97438 * 24 23 22 46 46 H 1.07993 * 120.40811 * 179.77087 * 26 22 21 47 47 H 1.08003 * 119.48098 * 180.02562 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7217 -1.2490 7 6 1.5300 0.0000 -2.4985 8 7 1.9175 -0.7566 -3.6916 9 6 1.5689 -0.3004 -4.9348 10 1 1.0079 0.6170 -5.0357 11 6 1.9365 -1.0171 -6.0654 12 7 1.6010 -0.5789 -7.2603 13 14 2.9074 -2.6034 -5.8909 14 1 1.9685 -3.7481 -5.7746 15 1 3.7697 -2.7900 -7.0854 16 1 3.7556 -2.5333 -4.6741 17 7 1.5516 -2.1025 -1.2492 18 6 2.2284 -3.0565 -0.5798 19 8 3.2439 -2.7712 0.0234 20 6 1.7342 -4.4534 -0.5794 21 6 2.4422 -5.4345 0.1099 22 6 1.9591 -6.7459 0.1040 23 6 2.6737 -7.8229 0.8279 24 7 2.1943 -9.0823 0.8064 25 8 3.6922 -7.5709 1.4408 26 6 0.7858 -7.0151 -0.6070 27 6 0.1461 -5.9814 -1.2707 28 7 0.6248 -4.7574 -1.2404 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 0.4437 0.0782 -2.4548 39 1 1.9647 0.9986 -2.5444 40 1 2.4217 -1.5804 -3.6010 41 1 1.8582 -1.0795 -8.0503 42 1 0.7412 -2.3303 -1.7311 43 1 3.3474 -5.1854 0.6438 44 1 1.3815 -9.2837 0.3168 45 1 2.6624 -9.7876 1.2801 46 1 0.3832 -8.0167 -0.6383 47 1 -0.7608 -6.1839 -1.8211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486424103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:30 Heat of formation + Delta-G solvation = -55.280240 kcal Electronic energy + Delta-G solvation = -29513.766600 eV Core-core repulsion = 25502.634397 eV Total energy + Delta-G solvation = -4011.132203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.10470 -41.12254 -39.98004 -38.65830 -36.35121 -35.27231 -34.74428 -33.57386 -33.24038 -32.47360 -29.75171 -28.16589 -27.95924 -26.47920 -25.80472 -24.81675 -23.23259 -22.78728 -21.43297 -20.13825 -19.90907 -19.24836 -18.45149 -18.09333 -17.27861 -17.10281 -16.90446 -16.53369 -16.37328 -16.11014 -16.06589 -15.61276 -15.32390 -15.05302 -14.95333 -14.86267 -14.79360 -14.49352 -14.30200 -13.85246 -13.35818 -13.18865 -13.09438 -13.00440 -12.81164 -12.56879 -12.38627 -12.22395 -12.06066 -11.84781 -11.72680 -11.66279 -11.37101 -11.33909 -11.22452 -10.98884 -10.83135 -10.69734 -10.43283 -9.98195 -9.30488 -8.04403 -5.36442 -0.68806 -0.33408 1.31724 1.34112 1.39826 1.40580 1.87887 1.92898 2.28567 2.43609 2.73665 3.01432 3.27756 3.44899 3.49818 3.65309 3.71931 3.77466 3.79935 3.99903 4.01275 4.18281 4.27957 4.40393 4.54215 4.58973 4.60863 4.76005 4.80559 4.83712 4.86751 4.95028 5.04189 5.06933 5.12073 5.22507 5.28779 5.34501 5.39407 5.52007 5.58286 5.72674 5.75991 6.19532 6.24115 6.34441 6.65836 7.04980 7.08411 7.11710 7.81088 7.98963 9.17112 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009406 B = 0.004179 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.151955 B = 6698.910771 C = 8742.659187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.122 4.122 5 C 0.150 3.850 6 H 0.067 0.933 7 C 0.147 3.853 8 N -0.758 5.758 9 C -0.226 4.226 10 H 0.067 0.933 11 C -0.053 4.053 12 N -0.978 5.978 13 Si 0.942 3.058 14 H -0.273 1.273 15 H -0.295 1.295 16 H -0.274 1.274 17 N -0.688 5.688 18 C 0.563 3.437 19 O -0.558 6.558 20 C 0.059 3.941 21 C -0.074 4.074 22 C -0.109 4.109 23 C 0.565 3.435 24 N -0.816 5.816 25 O -0.580 6.580 26 C -0.087 4.087 27 C 0.098 3.902 28 N -0.457 5.457 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.361 0.639 41 H 0.258 0.742 42 H 0.415 0.585 43 H 0.135 0.865 44 H 0.422 0.578 45 H 0.419 0.581 46 H 0.202 0.798 47 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 -16.369 19.547 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.179 4.179 5 C 0.045 3.955 6 H 0.085 0.915 7 C 0.021 3.979 8 N -0.403 5.403 9 C -0.357 4.357 10 H 0.085 0.915 11 C -0.245 4.245 12 N -0.629 5.629 13 Si 0.771 3.229 14 H -0.199 1.199 15 H -0.222 1.222 16 H -0.200 1.200 17 N -0.338 5.338 18 C 0.348 3.652 19 O -0.436 6.436 20 C -0.078 4.078 21 C -0.096 4.096 22 C -0.120 4.120 23 C 0.350 3.650 24 N -0.382 5.382 25 O -0.459 6.459 26 C -0.107 4.107 27 C -0.062 4.062 28 N -0.169 5.169 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.194 0.806 41 H 0.067 0.933 42 H 0.252 0.748 43 H 0.153 0.847 44 H 0.255 0.745 45 H 0.252 0.748 46 H 0.219 0.781 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.546 -14.984 19.725 25.622 hybrid contribution 0.931 -1.782 -0.332 2.038 sum -5.616 -16.767 19.394 26.244 Atomic orbital electron populations 1.21883 0.93128 1.01857 1.02640 1.20854 0.97001 0.95948 0.93306 1.21891 1.00932 0.93981 1.02953 1.21789 1.00434 0.99065 0.96614 1.21310 0.98642 0.80328 0.95194 0.91532 1.21237 0.98703 0.94488 0.83452 1.42743 1.67536 1.27729 1.02300 1.19053 1.27507 1.05768 0.83381 0.91472 1.25280 1.02463 1.01845 0.94875 1.69841 1.53419 1.41947 0.97694 0.85605 0.79117 0.81603 0.76561 1.19854 1.22155 1.19993 1.45806 1.28986 1.07977 1.50981 1.18082 0.83344 0.84611 0.79117 1.90773 1.25556 1.82204 1.45093 1.20917 0.94052 0.94152 0.98674 1.22104 0.99493 0.92320 0.95664 1.20359 0.97678 0.93280 1.00692 1.18139 0.83414 0.83996 0.79491 1.43450 1.31272 1.08140 1.55291 1.90855 1.26452 1.83457 1.45175 1.23094 0.91866 1.03515 0.92234 1.23660 1.00403 0.86033 0.96106 1.67480 1.10289 1.24717 1.14426 0.92003 0.91082 0.93123 0.90583 0.93069 0.91953 0.94447 0.93721 0.91683 0.93149 0.93407 0.80628 0.93307 0.74775 0.84670 0.74498 0.74815 0.78091 0.77223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 7.97 71.98 0.57 -2.60 16 2 C -0.07 -1.82 0.62 -52.18 -0.03 -1.85 16 3 C -0.14 -3.28 8.12 71.98 0.58 -2.70 16 4 C -0.12 -3.30 7.00 71.98 0.50 -2.80 16 5 C 0.15 4.90 1.69 44.99 0.08 4.98 16 6 H 0.07 2.49 7.57 -2.39 -0.02 2.47 16 7 C 0.15 5.47 5.10 86.38 0.44 5.91 16 8 N -0.76 -35.68 5.24 -343.43 -1.80 -37.48 16 9 C -0.23 -12.79 10.47 84.03 0.88 -11.91 16 10 H 0.07 4.07 8.06 -2.91 -0.02 4.05 16 11 C -0.05 -3.11 5.50 84.86 0.47 -2.65 16 12 N -0.98 -62.33 13.97 21.65 0.30 -62.03 16 13 Si 0.94 47.13 27.73 68.60 1.90 49.03 16 14 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 16 H -0.27 -13.35 6.52 99.48 0.65 -12.70 16 17 N -0.69 -22.20 3.63 -445.09 -1.62 -23.82 16 18 C 0.56 18.98 6.16 86.88 0.54 19.51 16 19 O -0.56 -21.36 13.44 -3.77 -0.05 -21.42 16 20 C 0.06 1.68 6.75 41.90 0.28 1.97 16 21 C -0.07 -1.98 9.20 22.88 0.21 -1.77 16 22 C -0.11 -2.01 5.91 -19.90 -0.12 -2.13 16 23 C 0.57 10.37 8.07 86.87 0.70 11.07 16 24 N -0.82 -5.21 8.83 -175.40 -1.55 -6.76 16 25 O -0.58 -16.85 17.28 -3.77 -0.07 -16.92 16 26 C -0.09 -0.85 9.62 22.71 0.22 -0.63 16 27 C 0.10 1.38 11.17 84.81 0.95 2.33 16 28 N -0.46 -11.03 9.51 -185.07 -1.76 -12.79 16 29 H 0.06 1.46 6.32 -2.39 -0.02 1.44 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.20 7.60 -2.38 -0.02 1.18 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.49 6.54 -2.39 -0.02 1.47 16 35 H 0.04 1.10 5.77 -2.39 -0.01 1.09 16 36 H 0.04 1.36 7.53 -2.39 -0.02 1.35 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.80 6.17 -2.38 -0.01 1.78 16 39 H 0.05 1.79 6.71 -2.39 -0.02 1.77 16 40 H 0.36 17.19 5.20 -92.71 -0.48 16.71 16 41 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.42 13.16 7.93 -92.71 -0.73 12.42 16 43 H 0.14 4.25 7.33 -2.91 -0.02 4.23 16 44 H 0.42 -0.74 6.97 -92.71 -0.65 -1.38 16 45 H 0.42 1.80 8.93 -92.71 -0.83 0.98 16 46 H 0.20 -0.46 6.53 -2.91 -0.02 -0.48 16 47 H 0.21 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -83.84 377.80 -0.06 -83.90 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -1.69 Total: 31.55 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 6.27 Total: 16.73 kcal Atomic # 7 Polarization: -136.45 SS G_CDS: -6.42 Total: -142.87 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.12 Total: -38.33 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.90 Total: 49.03 kcal Total: -83.84 -0.06 -83.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486424103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.619 kcal (2) G-P(sol) polarization free energy of solvation -83.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds