Wall clock time and date at job start Tue Mar 31 2020 18:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00340 * 2 1 4 4 C 1.53001 * 109.46965 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47388 * 239.99667 * 3 2 1 6 6 C 1.53001 * 109.47242 * 119.99868 * 3 2 1 7 7 C 1.50697 * 109.47382 * 180.02562 * 6 3 2 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 6 3 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 6 3 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47028 * 60.00888 * 23 21 19 25 25 H 1.48503 * 109.46851 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47412 * 300.00497 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.07999 * 120.00081 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00328 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99625 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47276 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46682 * 299.99654 * 4 3 2 33 33 H 1.08999 * 109.47429 * 59.99439 * 4 3 2 34 34 H 1.08991 * 109.47537 * 300.00259 * 5 3 2 35 35 H 1.09005 * 109.46729 * 60.00184 * 5 3 2 36 36 H 1.09000 * 109.46992 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47235 * 59.99747 * 6 3 2 38 38 H 1.09006 * 109.47061 * 300.00194 * 6 3 2 39 39 H 0.96998 * 119.99587 * 359.97438 * 9 7 6 40 40 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 41 41 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 42 42 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 43 43 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 44 44 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 45 45 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 46 46 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 47 47 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3860 -1.2492 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6913 1.2496 8 8 3.5448 3.4791 0.3400 9 7 4.5390 2.9830 2.2603 10 6 5.2714 4.2516 2.2603 11 6 6.1377 4.3315 3.4908 12 7 5.6425 4.8645 4.5897 13 6 6.3773 4.9506 5.6925 14 8 5.8640 5.5000 6.8200 15 6 7.6832 4.4629 5.6738 16 6 8.1631 3.9173 4.4985 17 6 9.5696 3.3811 4.4247 18 7 9.5567 1.9391 4.6829 19 6 10.7283 1.2305 4.6686 20 1 11.6614 1.7338 4.4627 21 6 10.7162 -0.1358 4.9138 22 7 9.5784 -0.7502 5.1594 23 14 12.3144 -1.1025 4.8936 24 1 13.2335 -0.5610 5.9266 25 1 12.0321 -2.5317 5.1819 26 1 12.9480 -0.9837 3.5559 27 7 7.3696 3.8668 3.4383 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.6143 3.4119 0.0011 32 1 0.4424 2.4104 -0.8892 33 1 0.4429 2.4100 0.8908 34 1 3.6514 0.5576 -1.2492 35 1 2.3165 1.3283 -2.1392 36 1 3.4879 2.3302 -1.2493 37 1 3.6514 0.5575 1.2493 38 1 2.3164 1.3283 2.1393 39 1 4.6604 2.3528 2.9876 40 1 4.5632 5.0802 2.2607 41 1 5.8978 4.3095 1.3702 42 1 5.4252 4.8649 7.4025 43 1 8.3056 4.5138 6.5550 44 1 10.1877 3.8785 5.1721 45 1 9.9784 3.5689 3.4318 46 1 8.7182 1.4863 4.8639 47 1 9.5699 -1.7049 5.3304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489077083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:14 Heat of formation + Delta-G solvation = 5.793247 kcal Electronic energy + Delta-G solvation = -28079.346942 eV Core-core repulsion = 24070.863084 eV Total energy + Delta-G solvation = -4008.483858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.29152 -40.26170 -37.88633 -37.35773 -35.64495 -34.62712 -33.16278 -31.94585 -31.43459 -30.68800 -28.90787 -27.35521 -26.77296 -26.59888 -23.54361 -23.12728 -22.47395 -21.50883 -20.56247 -18.89714 -18.35866 -17.84932 -17.33248 -17.22069 -16.33376 -15.93082 -15.64642 -15.55166 -15.29765 -14.91390 -14.63189 -14.24386 -14.02706 -13.83231 -13.60844 -13.35932 -13.23512 -13.00962 -12.77678 -12.68631 -12.22634 -12.10209 -11.94154 -11.84179 -11.40675 -11.24035 -11.09902 -11.06610 -10.88253 -10.77080 -10.67354 -10.43647 -10.21889 -9.88136 -9.71855 -9.57289 -9.38041 -9.22872 -9.15687 -9.02549 -7.10978 -5.88952 -3.20128 0.73206 0.96411 2.08937 2.55596 2.92722 3.29481 3.37906 3.42538 3.43219 3.69042 3.86591 4.30757 4.47726 4.52706 4.61376 4.76744 4.84173 4.95469 5.09226 5.11699 5.20812 5.26524 5.33379 5.40457 5.44138 5.49477 5.57127 5.62412 5.69461 5.71092 5.88085 5.91146 5.92867 6.01213 6.13913 6.17203 6.31707 6.32377 6.39725 6.42732 6.53191 6.63058 6.98197 7.24884 7.35489 7.57541 8.06530 8.13074 8.26929 9.39400 9.89533 10.25373 11.33356 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.002860 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.123685 B = 9789.195128 C =12090.773414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.130 4.130 7 C 0.521 3.479 8 O -0.532 6.532 9 N -0.720 5.720 10 C 0.197 3.803 11 C 0.315 3.685 12 N -0.533 5.533 13 C 0.354 3.646 14 O -0.477 6.477 15 C -0.218 4.218 16 C 0.200 3.800 17 C 0.196 3.804 18 N -0.721 5.721 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.912 3.088 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.284 1.284 27 N -0.492 5.492 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.404 0.596 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.407 0.593 43 H 0.156 0.844 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.385 0.615 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.021 6.843 -4.047 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.207 4.207 6 C -0.170 4.170 7 C 0.309 3.691 8 O -0.410 6.410 9 N -0.373 5.373 10 C 0.072 3.928 11 C 0.046 3.954 12 N -0.259 5.259 13 C 0.166 3.834 14 O -0.284 6.284 15 C -0.242 4.242 16 C 0.055 3.945 17 C 0.068 3.932 18 N -0.367 5.367 19 C -0.376 4.376 20 H 0.092 0.908 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.742 3.258 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.211 1.211 27 N -0.208 5.208 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.238 0.762 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.266 0.734 43 H 0.174 0.826 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.218 0.782 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.270 7.862 -5.653 18.934 hybrid contribution 0.923 -1.503 1.685 2.439 sum -15.347 6.360 -3.968 17.080 Atomic orbital electron populations 1.24001 0.96168 1.01996 1.01369 1.22974 0.95944 0.97707 0.99523 1.19368 0.94882 0.93263 0.94449 1.22184 0.98532 0.99676 1.00834 1.22063 0.99243 1.03769 0.95666 1.21726 0.99394 0.95633 1.00233 1.20600 0.78845 0.88590 0.81091 1.90579 1.64586 1.50663 1.35170 1.45892 1.44793 1.20563 1.26051 1.19837 0.93131 0.87491 0.92372 1.22755 0.89389 0.90985 0.92281 1.67676 1.40010 1.17829 1.00363 1.19373 0.88725 0.88752 0.86508 1.84704 1.76623 1.37656 1.29451 1.22976 0.97607 1.01637 1.01953 1.22192 0.97111 0.88434 0.86733 1.19728 0.85850 0.87486 1.00149 1.42142 1.08052 1.00582 1.85882 1.19162 0.86513 0.90421 1.41479 0.90789 1.24766 0.97122 0.96543 1.02107 1.69652 1.24298 1.09586 1.54361 0.86202 0.82562 0.79070 0.77932 1.21102 1.21613 1.21066 1.68197 1.04395 1.16924 1.31290 0.87867 0.88780 0.87382 0.89494 0.92841 0.93269 0.93164 0.93042 0.89401 0.88356 0.88752 0.76189 0.88842 0.88449 0.73375 0.82600 0.93753 0.93376 0.78163 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 13.70 29.02 0.40 -1.21 16 2 C -0.14 -1.26 8.76 -36.03 -0.32 -1.58 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.30 16 4 C -0.16 -1.54 6.83 37.16 0.25 -1.28 16 5 C -0.15 -1.60 8.16 37.16 0.30 -1.30 16 6 C -0.13 -1.24 4.75 -27.88 -0.13 -1.37 16 7 C 0.52 6.17 7.24 -10.98 -0.08 6.09 16 8 O -0.53 -7.46 11.35 5.56 0.06 -7.39 16 9 N -0.72 -8.53 5.55 -61.48 -0.34 -8.87 16 10 C 0.20 2.53 6.10 -5.20 -0.03 2.50 16 11 C 0.32 4.67 7.01 -157.23 -1.10 3.57 16 12 N -0.53 -7.79 10.36 -10.78 -0.11 -7.90 16 13 C 0.35 4.89 7.83 -16.70 -0.13 4.76 16 14 O -0.48 -5.35 13.58 -18.25 -0.25 -5.59 16 15 C -0.22 -3.16 9.79 -39.16 -0.38 -3.55 16 16 C 0.20 3.39 6.18 -82.32 -0.51 2.89 16 17 C 0.20 3.75 6.61 -5.20 -0.03 3.72 16 18 N -0.72 -17.43 5.59 -61.08 -0.34 -17.78 16 19 C -0.25 -6.55 9.99 -15.06 -0.15 -6.70 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 N -0.49 -8.32 10.27 -7.06 -0.07 -8.40 16 28 H 0.10 0.81 5.69 -52.49 -0.30 0.51 16 29 H 0.09 0.66 8.06 -52.48 -0.42 0.24 16 30 H 0.11 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.09 1.03 5.51 -51.93 -0.29 0.74 16 32 H 0.05 0.49 7.49 -51.93 -0.39 0.11 16 33 H 0.05 0.44 7.50 -51.93 -0.39 0.06 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.10 5.51 -51.93 -0.29 0.82 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 4.53 8.46 -40.82 -0.35 4.19 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.41 2.53 9.06 45.56 0.41 2.94 16 43 H 0.16 1.99 8.06 -52.48 -0.42 1.57 16 44 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.38 9.93 7.66 -40.82 -0.31 9.62 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -32.12 392.08 -7.66 -39.78 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.09 Total: 14.12 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -2.13 Total: 5.89 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -0.14 Total: -69.29 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.18 Total: -12.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.12 -7.66 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489077083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.572 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds