Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00340 * 2 1 4 4 C 1.53001 * 109.46965 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47388 * 239.99667 * 3 2 1 6 6 C 1.53001 * 109.47242 * 119.99868 * 3 2 1 7 7 C 1.50697 * 109.47382 * 180.02562 * 6 3 2 8 8 O 1.21280 * 119.99937 * 359.97438 * 7 6 3 9 9 N 1.34783 * 120.00199 * 180.02562 * 7 6 3 10 10 C 1.46490 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47167 * 179.97438 * 10 9 7 12 12 N 1.31789 * 119.09648 * 269.98067 * 11 10 9 13 13 C 1.32799 * 120.71637 * 179.97438 * 12 11 10 14 14 O 1.35519 * 120.50861 * 179.97438 * 13 12 11 15 15 C 1.39416 * 118.97466 * 359.74609 * 13 12 11 16 16 C 1.38181 * 118.35119 * 0.51526 * 15 13 12 17 17 C 1.50697 * 120.41367 * 179.76229 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.71971 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47028 * 60.00888 * 23 21 19 25 25 H 1.48503 * 109.46851 * 180.02562 * 23 21 19 26 26 H 1.48492 * 109.47412 * 300.00497 * 23 21 19 27 27 N 1.31763 * 119.09108 * 90.00041 * 11 10 9 28 28 H 1.07999 * 120.00081 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00328 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99625 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47276 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46682 * 299.99654 * 4 3 2 33 33 H 1.08999 * 109.47429 * 59.99439 * 4 3 2 34 34 H 1.08991 * 109.47537 * 300.00259 * 5 3 2 35 35 H 1.09005 * 109.46729 * 60.00184 * 5 3 2 36 36 H 1.09000 * 109.46992 * 179.97438 * 5 3 2 37 37 H 1.09003 * 109.47235 * 59.99747 * 6 3 2 38 38 H 1.09006 * 109.47061 * 300.00194 * 6 3 2 39 39 H 0.96998 * 119.99587 * 359.97438 * 9 7 6 40 40 H 1.09004 * 109.47512 * 60.00127 * 10 9 7 41 41 H 1.08994 * 109.47511 * 300.00073 * 10 9 7 42 42 H 0.96702 * 114.00026 * 90.00217 * 14 13 12 43 43 H 1.08004 * 120.81960 * 180.27450 * 15 13 12 44 44 H 1.09004 * 109.47205 * 334.71946 * 17 16 15 45 45 H 1.09005 * 109.47240 * 214.72155 * 17 16 15 46 46 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 47 47 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9432 1.3860 -1.2492 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6913 1.2496 8 8 3.5448 3.4791 0.3400 9 7 4.5390 2.9830 2.2603 10 6 5.2714 4.2516 2.2603 11 6 6.1377 4.3315 3.4908 12 7 5.6425 4.8645 4.5897 13 6 6.3773 4.9506 5.6925 14 8 5.8640 5.5000 6.8200 15 6 7.6832 4.4629 5.6738 16 6 8.1631 3.9173 4.4985 17 6 9.5696 3.3811 4.4247 18 7 9.5567 1.9391 4.6829 19 6 10.7283 1.2305 4.6686 20 1 11.6614 1.7338 4.4627 21 6 10.7162 -0.1358 4.9138 22 7 9.5784 -0.7502 5.1594 23 14 12.3144 -1.1025 4.8936 24 1 13.2335 -0.5610 5.9266 25 1 12.0321 -2.5317 5.1819 26 1 12.9480 -0.9837 3.5559 27 7 7.3696 3.8668 3.4383 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.6143 3.4119 0.0011 32 1 0.4424 2.4104 -0.8892 33 1 0.4429 2.4100 0.8908 34 1 3.6514 0.5576 -1.2492 35 1 2.3165 1.3283 -2.1392 36 1 3.4879 2.3302 -1.2493 37 1 3.6514 0.5575 1.2493 38 1 2.3164 1.3283 2.1393 39 1 4.6604 2.3528 2.9876 40 1 4.5632 5.0802 2.2607 41 1 5.8978 4.3095 1.3702 42 1 5.4252 4.8649 7.4025 43 1 8.3056 4.5138 6.5550 44 1 10.1877 3.8785 5.1721 45 1 9.9784 3.5689 3.4318 46 1 8.7182 1.4863 4.8639 47 1 9.5699 -1.7049 5.3304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489077083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = -19.526955 kcal Electronic energy + Delta-G solvation = -28080.444908 eV Core-core repulsion = 24070.863084 eV Total energy + Delta-G solvation = -4009.581824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.45006 -41.18935 -38.86532 -38.21443 -37.09877 -35.85890 -34.63410 -33.17723 -32.48201 -32.07643 -29.85905 -28.24605 -28.15985 -27.72847 -25.23696 -24.24755 -23.43295 -22.80267 -21.49041 -19.96184 -19.43241 -19.09181 -18.78991 -18.18891 -17.29997 -17.03122 -16.77166 -16.57230 -16.50597 -16.21769 -15.68860 -15.50013 -15.33655 -15.00948 -14.80801 -14.52995 -14.37149 -14.17852 -14.05197 -13.66575 -13.53364 -13.17536 -12.96304 -12.93480 -12.72485 -12.64340 -12.25737 -12.17331 -12.00103 -11.97334 -11.84380 -11.79691 -11.52112 -11.50785 -10.99746 -10.78629 -10.48511 -10.39817 -10.22481 -10.14635 -9.07591 -7.96472 -5.27278 -0.40723 -0.22336 1.42990 1.50562 1.53095 1.58793 1.62315 1.91744 2.27428 2.51812 2.59359 2.74375 3.12759 3.38534 3.64812 3.77987 3.86217 3.88693 4.00840 4.09845 4.11162 4.17026 4.26409 4.41548 4.47724 4.49422 4.58108 4.66308 4.74943 4.79075 4.87284 4.88808 4.98735 5.07651 5.09867 5.11040 5.21839 5.25767 5.48004 5.49495 5.62242 5.80666 5.81081 5.96815 6.22505 6.41780 6.45955 6.88692 7.19524 7.30724 7.96762 8.22978 9.26388 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.002860 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.123685 B = 9789.195128 C =12090.773414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.126 4.126 7 C 0.519 3.481 8 O -0.556 6.556 9 N -0.718 5.718 10 C 0.202 3.798 11 C 0.317 3.683 12 N -0.536 5.536 13 C 0.364 3.636 14 O -0.474 6.474 15 C -0.213 4.213 16 C 0.184 3.816 17 C 0.198 3.802 18 N -0.732 5.732 19 C -0.248 4.248 20 H 0.083 0.917 21 C -0.069 4.069 22 N -0.966 5.966 23 Si 0.975 3.025 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.280 1.280 27 N -0.516 5.516 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.407 0.593 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.430 0.570 43 H 0.174 0.826 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.373 0.627 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 6.953 -3.218 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.172 4.172 3 C -0.019 4.019 4 C -0.208 4.208 5 C -0.205 4.205 6 C -0.166 4.166 7 C 0.308 3.692 8 O -0.435 6.435 9 N -0.371 5.371 10 C 0.076 3.924 11 C 0.048 3.952 12 N -0.262 5.262 13 C 0.176 3.824 14 O -0.285 6.285 15 C -0.237 4.237 16 C 0.039 3.961 17 C 0.071 3.929 18 N -0.376 5.376 19 C -0.379 4.379 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.804 3.196 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.206 1.206 27 N -0.233 5.233 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.242 0.758 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.294 0.706 43 H 0.192 0.808 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.205 0.795 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.792 8.003 -4.805 19.212 hybrid contribution 1.010 -1.406 1.443 2.254 sum -15.782 6.596 -3.362 17.432 Atomic orbital electron populations 1.24154 0.95971 1.02752 0.99990 1.22937 0.96210 0.97245 1.00761 1.19354 0.94773 0.93907 0.93913 1.22115 0.98459 0.98694 1.01488 1.22011 0.99366 1.02580 0.96560 1.21771 0.99526 0.94302 1.01001 1.21039 0.78568 0.89115 0.80484 1.90583 1.65302 1.51609 1.35972 1.45893 1.44635 1.20268 1.26278 1.19768 0.92966 0.88258 0.91360 1.22935 0.88864 0.90513 0.92848 1.67769 1.40034 1.17874 1.00562 1.19435 0.88440 0.87513 0.87010 1.84670 1.76716 1.38299 1.28829 1.23071 0.98123 1.00938 1.01522 1.21884 0.96343 0.89924 0.87902 1.19756 0.88009 0.85044 1.00091 1.42267 1.06846 1.02590 1.85893 1.19584 0.87662 0.90882 1.39746 0.89946 1.25560 1.00060 0.97694 1.02882 1.69802 1.26225 1.09369 1.56233 0.85196 0.79144 0.77174 0.78118 1.20023 1.22282 1.20594 1.68125 1.05348 1.17963 1.31893 0.87686 0.87481 0.86771 0.91582 0.92426 0.92337 0.93010 0.92700 0.91541 0.87582 0.86979 0.75772 0.88254 0.89199 0.70607 0.80834 0.91786 0.94070 0.79496 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 13.70 67.78 0.93 -1.80 16 2 C -0.15 -2.46 8.76 25.65 0.22 -2.23 16 3 C -0.02 -0.35 0.74 -52.93 -0.04 -0.39 16 4 C -0.15 -2.88 6.83 71.98 0.49 -2.38 16 5 C -0.15 -3.15 8.16 71.98 0.59 -2.56 16 6 C -0.13 -2.29 4.75 29.85 0.14 -2.15 16 7 C 0.52 12.21 7.24 87.66 0.63 12.84 16 8 O -0.56 -15.83 11.35 -3.03 -0.03 -15.87 16 9 N -0.72 -16.84 5.55 -466.81 -2.59 -19.43 16 10 C 0.20 5.19 6.10 85.63 0.52 5.71 16 11 C 0.32 9.26 7.01 138.76 0.97 10.23 16 12 N -0.54 -14.94 10.36 -300.69 -3.12 -18.06 16 13 C 0.36 9.35 7.83 84.83 0.66 10.01 16 14 O -0.47 -9.30 13.58 -88.22 -1.20 -10.50 16 15 C -0.21 -5.84 9.79 22.54 0.22 -5.61 16 16 C 0.18 6.12 6.18 42.44 0.26 6.38 16 17 C 0.20 7.49 6.61 85.63 0.57 8.06 16 18 N -0.73 -35.42 5.59 -347.17 -1.94 -37.36 16 19 C -0.25 -13.14 9.99 84.04 0.84 -12.30 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 22 N -0.97 -56.77 13.06 21.65 0.28 -56.49 16 23 Si 0.98 44.31 29.55 68.60 2.03 46.33 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 N -0.52 -17.43 10.27 -176.24 -1.81 -19.24 16 28 H 0.11 1.44 5.69 -2.91 -0.02 1.43 16 29 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.11 1.69 8.06 -2.91 -0.02 1.66 16 31 H 0.07 1.57 5.51 -2.39 -0.01 1.56 16 32 H 0.06 1.02 7.49 -2.39 -0.02 1.00 16 33 H 0.06 0.98 7.50 -2.39 -0.02 0.96 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.07 1.72 5.51 -2.39 -0.01 1.70 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.41 8.97 8.46 -92.71 -0.78 8.19 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.43 4.02 9.06 -74.06 -0.67 3.35 16 43 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.06 2.19 8.06 -2.38 -0.02 2.17 16 45 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.37 19.50 7.66 -92.71 -0.71 18.79 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -68.20 392.08 -2.04 -70.24 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -1.14 Total: 39.92 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.49 Total: 20.46 kcal Atomic # 7 Polarization: -141.40 SS G_CDS: -9.17 Total: -150.58 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.23 Total: -26.37 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.20 -2.04 -70.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489077083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.710 kcal (2) G-P(sol) polarization free energy of solvation -68.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds