Wall clock time and date at job start Tue Mar 31 2020 17:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 C 1.53001 * 109.47281 * 239.99790 * 2 1 3 5 5 C 1.53007 * 109.46922 * 120.00168 * 2 1 3 6 6 H 1.09000 * 109.46974 * 299.99672 * 5 2 1 7 7 C 1.53001 * 109.46922 * 179.97438 * 5 2 1 8 8 N 1.46503 * 109.46890 * 184.99712 * 7 5 2 9 9 C 1.36933 * 120.00016 * 179.97438 * 8 7 5 10 10 H 1.07996 * 119.99949 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00186 * 180.02562 * 9 8 7 12 12 N 1.31613 * 120.00165 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99872 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.46977 * 90.00083 * 13 11 9 15 15 H 1.48498 * 109.46993 * 210.00480 * 13 11 9 16 16 H 1.48499 * 109.46847 * 330.00482 * 13 11 9 17 17 N 1.46501 * 109.47182 * 59.99617 * 5 2 1 18 18 C 1.34772 * 120.00117 * 275.00529 * 17 5 2 19 19 O 1.21530 * 120.00048 * 359.97438 * 18 17 5 20 20 C 1.47978 * 119.99775 * 180.02562 * 18 17 5 21 21 C 1.39851 * 120.59452 * 304.94459 * 20 18 17 22 22 C 1.38464 * 118.34916 * 180.02562 * 21 20 18 23 23 C 1.38588 * 119.46244 * 359.97438 * 22 21 20 24 24 N 1.31643 * 121.17536 * 0.02562 * 23 22 21 25 25 C 1.32465 * 121.80232 * 0.02562 * 24 23 22 26 26 C 1.48313 * 119.80158 * 179.97438 * 25 24 23 27 27 N 1.34777 * 119.99683 * 354.23290 * 26 25 24 28 28 O 1.21487 * 119.99902 * 174.22909 * 26 25 24 29 29 H 1.09000 * 109.47028 * 300.00193 * 1 2 3 30 30 H 1.08999 * 109.46820 * 59.99922 * 1 2 3 31 31 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46936 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47308 * 299.99779 * 3 2 1 34 34 H 1.09000 * 109.47298 * 59.99972 * 3 2 1 35 35 H 1.09002 * 109.47205 * 300.00416 * 4 2 1 36 36 H 1.08999 * 109.46958 * 60.00373 * 4 2 1 37 37 H 1.08997 * 109.47249 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.46967 * 304.99583 * 7 5 2 39 39 H 1.08998 * 109.46935 * 64.99936 * 7 5 2 40 40 H 0.97005 * 119.99628 * 0.02562 * 8 7 5 41 41 H 0.97005 * 120.00153 * 179.97438 * 12 11 9 42 42 H 0.96999 * 119.99624 * 95.00122 * 17 5 2 43 43 H 1.07995 * 120.82406 * 359.97438 * 21 20 18 44 44 H 1.08005 * 120.26657 * 180.02562 * 22 21 20 45 45 H 1.07997 * 119.40953 * 180.28145 * 23 22 21 46 46 H 0.97002 * 120.00135 * 359.97438 * 27 26 25 47 47 H 0.96992 * 120.00114 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.6767 -0.2075 2.1393 7 6 3.5700 -0.7219 1.2490 8 7 4.0582 -1.5141 2.3805 9 6 5.4045 -1.6586 2.5849 10 1 6.1063 -1.1881 1.9123 11 6 5.8671 -2.4097 3.6567 12 7 7.1611 -2.5481 3.8535 13 14 4.6531 -3.2228 4.8206 14 1 4.3298 -4.5851 4.3259 15 1 5.2537 -3.3176 6.1753 16 1 3.4107 -2.4120 4.8855 17 7 1.5515 -2.1025 1.2493 18 6 0.3296 -2.3852 1.7425 19 8 -0.3670 -1.4943 2.1876 20 6 -0.1635 -3.7804 1.7429 21 6 -0.2044 -4.5213 0.5575 22 6 -0.6748 -5.8225 0.6113 23 6 -1.0868 -6.3487 1.8254 24 7 -1.0397 -5.6332 2.9294 25 6 -0.5995 -4.3838 2.9333 26 6 -0.5661 -3.6181 4.2030 27 7 -1.0895 -4.1506 5.3250 28 8 -0.0668 -2.5109 4.2316 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.9329 -1.1565 0.3176 39 1 3.9337 0.3017 1.3383 40 1 3.4277 -1.9370 2.9844 41 1 7.4844 -3.0726 4.6027 42 1 2.1077 -2.8136 0.8943 43 1 0.1219 -4.0889 -0.3768 44 1 -0.7193 -6.4227 -0.2855 45 1 -1.4492 -7.3652 1.8671 46 1 -1.4884 -5.0345 5.3020 47 1 -1.0680 -3.6497 6.1553 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508035539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:25 Heat of formation + Delta-G solvation = -20.814267 kcal Electronic energy + Delta-G solvation = -30629.721934 eV Core-core repulsion = 26620.084287 eV Total energy + Delta-G solvation = -4009.637646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13750 -39.66585 -38.73441 -37.27477 -34.53995 -33.91454 -33.36807 -32.53844 -31.72155 -31.16034 -28.11437 -27.15497 -26.83534 -25.25395 -24.58213 -23.43331 -21.46963 -21.14517 -20.62535 -18.66876 -18.43613 -17.87876 -17.36107 -17.07269 -16.39886 -15.88437 -15.57536 -15.23146 -15.05347 -14.74427 -14.33001 -14.13910 -13.87011 -13.74108 -13.64649 -13.48091 -13.23635 -12.99097 -12.77782 -12.69779 -12.23752 -11.97785 -11.84517 -11.49646 -11.39819 -11.17188 -10.83074 -10.73870 -10.60753 -10.49761 -10.31080 -10.24709 -9.97229 -9.85141 -9.66251 -9.59150 -9.57224 -9.41201 -8.87205 -8.59008 -7.20328 -5.75448 -3.10273 0.25691 0.70533 2.61309 2.93313 3.22621 3.31020 3.39839 3.48222 3.54286 3.65659 3.96593 4.43024 4.57139 4.60361 4.62907 4.66276 4.86134 5.01725 5.10854 5.11955 5.19769 5.48175 5.54030 5.57716 5.61032 5.66958 5.76242 5.83798 5.88359 5.92074 6.01117 6.10068 6.11232 6.15052 6.28387 6.39394 6.43687 6.48144 6.60368 6.70946 6.74050 6.93247 7.16069 7.43779 7.77532 8.00888 8.22419 8.43581 8.51277 9.23703 9.96573 10.16496 11.42709 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008202 B = 0.005973 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.110708 B = 4686.353570 C = 6626.877748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.148 3.852 6 H 0.090 0.910 7 C 0.147 3.853 8 N -0.755 5.755 9 C -0.242 4.242 10 H 0.091 0.909 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.875 3.125 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.271 1.271 17 N -0.706 5.706 18 C 0.564 3.436 19 O -0.497 6.497 20 C -0.117 4.117 21 C -0.054 4.054 22 C -0.151 4.151 23 C 0.108 3.892 24 N -0.460 5.460 25 C 0.120 3.880 26 C 0.561 3.439 27 N -0.839 5.839 28 O -0.489 6.489 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.400 0.600 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.168 0.832 46 H 0.407 0.593 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.913 -6.121 -9.237 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.043 3.957 6 H 0.108 0.892 7 C 0.019 3.981 8 N -0.401 5.401 9 C -0.372 4.372 10 H 0.109 0.891 11 C -0.188 4.188 12 N -0.581 5.581 13 Si 0.705 3.295 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.196 1.196 17 N -0.357 5.357 18 C 0.348 3.652 19 O -0.371 6.371 20 C -0.123 4.123 21 C -0.080 4.080 22 C -0.171 4.171 23 C -0.051 4.051 24 N -0.171 5.171 25 C -0.021 4.021 26 C 0.342 3.658 27 N -0.404 5.404 28 O -0.360 6.360 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.198 0.802 41 H 0.069 0.931 42 H 0.235 0.765 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.185 0.815 46 H 0.237 0.763 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -20.063 -5.038 -8.283 22.283 hybrid contribution -0.387 -1.156 0.307 1.257 sum -20.450 -6.195 -7.976 22.808 Atomic orbital electron populations 1.21883 0.94094 1.01544 1.01098 1.20896 0.96049 0.95669 0.95127 1.21888 1.01683 0.94751 1.01574 1.21915 1.01684 0.99787 0.96458 1.21355 0.94958 0.81256 0.98118 0.89176 1.21073 0.89095 0.96165 0.91733 1.42749 1.04795 1.61646 1.30921 1.19035 0.81746 1.26555 1.09863 0.89146 1.24615 0.95376 1.00406 0.98393 1.69695 1.11364 1.45073 1.32014 0.86666 0.81638 0.79795 0.81421 1.21395 1.21723 1.19636 1.45842 1.16594 1.10500 1.62804 1.17631 0.82537 0.86832 0.78220 1.90801 1.56331 1.46442 1.43538 1.21066 1.00567 0.96407 0.94280 1.21785 0.94986 0.93549 0.97693 1.22334 0.98741 0.95841 1.00149 1.22937 0.94969 0.99720 0.87444 1.67555 1.13078 1.05333 1.31178 1.21209 0.96614 0.90804 0.93428 1.17872 0.79145 0.85433 0.83344 1.43541 1.62977 1.22767 1.11124 1.91026 1.42604 1.18068 1.84269 0.91902 0.93916 0.93232 0.91753 0.92827 0.92512 0.93096 0.93102 0.91724 0.94626 0.93892 0.80229 0.93120 0.76517 0.83367 0.83444 0.81533 0.76292 0.76315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 7.00 37.16 0.26 -1.50 16 2 C -0.08 -1.02 0.62 -154.51 -0.10 -1.12 16 3 C -0.14 -1.78 8.12 37.16 0.30 -1.48 16 4 C -0.14 -1.65 7.97 37.16 0.30 -1.36 16 5 C 0.15 2.47 1.69 -67.93 -0.11 2.36 16 6 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 7 C 0.15 2.81 5.10 -4.04 -0.02 2.79 16 8 N -0.75 -18.33 5.24 -59.91 -0.31 -18.65 16 9 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 10 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 11 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 12 N -0.93 -29.74 13.97 55.49 0.78 -28.97 16 13 Si 0.87 23.39 27.74 -169.99 -4.71 18.67 16 14 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 15 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 16 H -0.27 -7.29 6.52 56.52 0.37 -6.93 16 17 N -0.71 -11.30 3.63 -54.71 -0.20 -11.49 16 18 C 0.56 9.47 4.28 -12.27 -0.05 9.42 16 19 O -0.50 -9.76 11.83 -18.72 -0.22 -9.98 16 20 C -0.12 -1.66 5.68 -104.49 -0.59 -2.26 16 21 C -0.05 -0.54 9.92 -38.90 -0.39 -0.92 16 22 C -0.15 -1.14 10.10 -39.37 -0.40 -1.54 16 23 C 0.11 0.91 11.17 -17.50 -0.20 0.72 16 24 N -0.46 -5.38 9.55 -9.51 -0.09 -5.47 16 25 C 0.12 1.75 6.78 -82.64 -0.56 1.19 16 26 C 0.56 9.23 7.99 -12.12 -0.10 9.13 16 27 N -0.84 -9.91 8.86 30.64 0.27 -9.64 16 28 O -0.49 -10.19 13.78 -18.69 -0.26 -10.45 16 29 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.70 5.78 -51.93 -0.30 0.40 16 32 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.56 7.60 -51.93 -0.39 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.79 6.32 -51.93 -0.33 0.46 16 38 H 0.04 0.65 6.17 -51.93 -0.32 0.33 16 39 H 0.04 0.84 6.71 -51.93 -0.35 0.49 16 40 H 0.36 9.17 5.20 -40.82 -0.21 8.95 16 41 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 42 H 0.40 6.00 8.58 -40.82 -0.35 5.65 16 43 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.41 3.77 8.18 -40.82 -0.33 3.44 16 47 H 0.41 4.20 8.93 -40.82 -0.36 3.83 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -37.77 375.95 -7.62 -45.39 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -6.63 Total: 16.44 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.91 Total: 8.48 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: 0.44 Total: -74.22 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.48 Total: -20.44 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.71 Total: 18.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.77 -7.62 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508035539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.580 kcal (2) G-P(sol) polarization free energy of solvation -37.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds