Wall clock time and date at job start Tue Mar 31 2020 19:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47037 * 2 1 4 4 H 1.09001 * 109.47430 * 57.99986 * 3 2 1 5 5 C 1.53007 * 109.47052 * 177.99883 * 3 2 1 6 6 N 1.46504 * 109.46915 * 175.00095 * 5 3 2 7 7 C 1.34783 * 119.99605 * 179.97438 * 6 5 3 8 8 O 1.21551 * 120.00013 * 0.02562 * 7 6 5 9 9 C 1.47839 * 119.99934 * 179.97438 * 7 6 5 10 10 C 1.39558 * 120.55947 * 4.60178 * 9 7 6 11 11 N 1.31662 * 120.56729 * 179.69735 * 10 9 7 12 12 C 1.31953 * 121.87800 * 0.28041 * 11 10 9 13 13 C 1.38312 * 121.08223 * 0.02562 * 12 11 10 14 14 C 1.38401 * 119.30168 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.85111 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.47593 * 297.99494 * 3 2 1 17 17 C 1.46898 * 111.00012 * 304.20156 * 16 3 2 18 18 C 1.50700 * 109.46863 * 185.66492 * 17 16 3 19 19 O 1.21292 * 120.00288 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00042 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00283 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00239 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00033 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00091 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00111 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47642 * 89.99391 * 25 23 21 27 27 H 1.48504 * 109.47035 * 209.99678 * 25 23 21 28 28 H 1.48500 * 109.47051 * 329.99238 * 25 23 21 29 29 H 1.09002 * 109.47099 * 185.24745 * 1 2 3 30 30 H 1.09004 * 109.46813 * 305.24380 * 1 2 3 31 31 H 1.08997 * 109.47406 * 65.24122 * 1 2 3 32 32 H 1.08996 * 109.46637 * 240.00271 * 2 1 3 33 33 H 1.08994 * 109.47209 * 120.00068 * 2 1 3 34 34 H 1.08991 * 109.47310 * 55.00118 * 5 3 2 35 35 H 1.08999 * 109.46727 * 294.99784 * 5 3 2 36 36 H 0.96993 * 120.00472 * 0.02562 * 6 5 3 37 37 H 1.08005 * 119.71827 * 359.97438 * 10 9 7 38 38 H 1.08007 * 119.46273 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.34691 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.46663 * 97.17413 * 15 14 13 41 41 H 1.09004 * 109.47055 * 217.17275 * 15 14 13 42 42 H 1.08995 * 109.47184 * 337.17746 * 15 14 13 43 43 H 1.00902 * 110.99728 * 68.14897 * 16 3 2 44 44 H 1.09001 * 109.47061 * 305.66033 * 17 16 3 45 45 H 1.08990 * 109.47389 * 65.66156 * 17 16 3 46 46 H 0.97004 * 119.99733 * 359.97438 * 20 18 17 47 47 H 0.97004 * 119.99854 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6477 1.9666 0.8715 5 6 3.5692 1.4427 0.0504 6 7 4.0615 2.8174 -0.0699 7 6 5.3866 3.0627 -0.0500 8 8 6.1732 2.1435 0.0672 9 6 5.8835 4.4498 -0.1719 10 6 4.9912 5.5221 -0.2119 11 7 5.4338 6.7579 -0.3145 12 6 6.7222 7.0328 -0.3885 13 6 7.6699 6.0257 -0.3617 14 6 7.2565 4.7092 -0.2549 15 6 8.2591 3.5846 -0.2220 16 7 1.5903 2.1209 -1.2229 17 6 2.0175 1.3852 -2.4205 18 6 1.6613 2.1788 -3.6511 19 8 1.1059 3.2515 -3.5413 20 7 1.9600 1.6966 -4.8738 21 6 1.6356 2.4182 -5.9933 22 1 1.1410 3.3734 -5.8956 23 6 1.9440 1.9213 -7.2537 24 7 1.6334 2.6133 -8.3269 25 14 2.8000 0.2697 -7.4228 26 1 1.7827 -0.8076 -7.5198 27 1 3.6390 0.2701 -8.6481 28 1 3.6593 0.0336 -6.2348 29 1 -0.3633 -1.0234 0.0940 30 1 -0.3633 0.5931 0.8393 31 1 -0.3634 0.4304 -0.9332 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9600 0.8437 -0.7720 35 1 3.9015 1.0194 0.9982 36 1 3.4338 3.5509 -0.1630 37 1 3.9288 5.3371 -0.1537 38 1 7.0421 8.0610 -0.4722 39 1 8.7215 6.2642 -0.4235 40 1 8.4488 3.2972 0.8121 41 1 7.8638 2.7293 -0.7702 42 1 9.1897 3.9138 -0.6842 43 1 0.5899 2.2519 -1.2167 44 1 3.0960 1.2314 -2.3870 45 1 1.5135 0.4193 -2.4526 46 1 2.4045 0.8389 -4.9615 47 1 1.8484 2.2662 -9.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567956458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:12 Heat of formation + Delta-G solvation = -33.123564 kcal Electronic energy + Delta-G solvation = -28913.977473 eV Core-core repulsion = 24903.806056 eV Total energy + Delta-G solvation = -4010.171417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.85469 -39.40212 -38.61498 -37.43029 -34.61782 -33.97887 -33.69740 -31.89409 -31.74255 -31.58418 -29.02488 -27.87948 -26.73245 -24.75301 -24.07538 -23.37996 -22.18161 -20.77249 -20.24073 -19.32782 -18.46137 -17.78934 -16.88241 -16.81555 -16.40998 -15.73306 -15.61460 -15.31583 -15.05813 -14.92652 -14.62363 -14.20930 -14.11356 -13.90979 -13.72309 -13.30920 -13.16363 -12.95481 -12.84167 -12.67215 -12.64130 -12.51748 -12.27702 -12.11439 -11.90536 -11.84190 -11.46693 -11.20340 -11.02628 -10.89890 -10.60031 -10.14853 -9.98186 -9.71662 -9.57350 -9.46094 -9.40341 -9.02784 -8.65702 -8.23042 -8.17193 -6.31542 -3.82835 0.51215 1.03218 2.78536 3.02648 3.05823 3.06277 3.14680 3.69867 3.73443 4.04205 4.10225 4.16912 4.47299 4.51431 4.52671 4.64159 4.73671 4.83480 4.87745 4.95026 5.15319 5.20043 5.21530 5.30555 5.35694 5.42405 5.47292 5.50509 5.57828 5.60816 5.66382 5.68727 5.77027 5.78139 5.92069 5.95216 5.98368 6.08140 6.18336 6.38734 6.43936 6.97654 7.43609 7.48809 7.57477 7.71714 8.13930 8.14240 8.59196 8.94720 9.42168 9.82337 10.81588 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.003644 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.533692 B = 7681.297678 C = 9413.799475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.159 4.159 3 C 0.072 3.928 4 H 0.092 0.908 5 C 0.128 3.872 6 N -0.707 5.707 7 C 0.563 3.437 8 O -0.540 6.540 9 C -0.193 4.193 10 C 0.146 3.854 11 N -0.491 5.491 12 C 0.123 3.877 13 C -0.188 4.188 14 C 0.018 3.982 15 C -0.121 4.121 16 N -0.659 5.659 17 C 0.041 3.959 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.878 3.122 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.410 0.590 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.355 0.645 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 -2.073 20.500 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.199 4.199 3 C -0.039 4.039 4 H 0.110 0.890 5 C 0.004 3.996 6 N -0.359 5.359 7 C 0.349 3.651 8 O -0.419 6.419 9 C -0.198 4.198 10 C -0.013 4.013 11 N -0.200 5.200 12 C -0.033 4.033 13 C -0.208 4.208 14 C 0.009 3.991 15 C -0.177 4.177 16 N -0.292 5.292 17 C -0.092 4.092 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.704 3.296 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.248 0.752 37 H 0.179 0.821 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.175 0.825 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.202 0.798 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.596 -0.850 20.368 22.124 hybrid contribution 0.379 -2.390 -0.516 2.474 sum 8.975 -3.239 19.851 22.026 Atomic orbital electron populations 1.21771 0.95149 1.02041 1.02225 1.22196 0.96851 0.97803 1.03043 1.21947 0.93983 0.93534 0.94404 0.89017 1.21422 0.92966 0.83249 1.01981 1.45728 1.06553 1.10209 1.73368 1.18000 0.82486 0.87888 0.76687 1.90712 1.55152 1.45793 1.50255 1.20856 0.94827 0.94830 1.09305 1.23064 1.00006 0.87157 0.91055 1.67721 1.17094 1.22098 1.13081 1.22992 0.88210 1.00030 0.92024 1.22070 1.01653 0.92626 1.04441 1.20488 0.93315 0.95537 0.89734 1.21073 0.96081 0.96933 1.03644 1.60164 1.20696 1.48830 0.99483 1.21794 1.01503 0.95393 0.90472 1.19697 0.84991 0.88020 0.83675 1.90564 1.45375 1.22607 1.85955 1.42213 1.54571 1.20235 1.06030 1.19420 1.36780 1.04984 0.82133 0.86281 1.25026 0.97782 0.98130 0.95140 1.69622 1.46591 1.37919 0.97981 0.86699 0.80109 0.84180 0.78583 1.19637 1.20143 1.19517 0.92443 0.92408 0.92378 0.91105 0.91249 0.91300 0.91033 0.75231 0.82145 0.82284 0.84202 0.90166 0.88271 0.91892 0.82452 0.89512 0.93224 0.79798 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.49 37.16 0.35 -0.96 16 2 C -0.16 -1.36 5.00 -26.73 -0.13 -1.49 16 3 C 0.07 0.69 2.72 -67.71 -0.18 0.50 16 4 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 5 C 0.13 1.36 4.80 -4.04 -0.02 1.35 16 6 N -0.71 -8.32 5.34 -61.25 -0.33 -8.64 16 7 C 0.56 7.58 7.74 -12.33 -0.10 7.49 16 8 O -0.54 -8.31 13.50 5.32 0.07 -8.24 16 9 C -0.19 -2.46 5.89 -104.83 -0.62 -3.08 16 10 C 0.15 1.81 10.71 -17.13 -0.18 1.63 16 11 N -0.49 -6.29 10.35 -12.91 -0.13 -6.43 16 12 C 0.12 1.27 11.17 -17.47 -0.20 1.07 16 13 C -0.19 -1.82 9.78 -39.49 -0.39 -2.21 16 14 C 0.02 0.21 5.95 -103.91 -0.62 -0.41 16 15 C -0.12 -1.28 8.82 36.01 0.32 -0.96 16 16 N -0.66 -8.57 5.26 -108.00 -0.57 -9.14 16 17 C 0.04 0.63 5.28 -4.98 -0.03 0.61 16 18 C 0.45 9.90 7.83 -10.98 -0.09 9.82 16 19 O -0.56 -14.57 15.90 5.55 0.09 -14.48 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 21 C -0.30 -8.60 10.16 -14.94 -0.15 -8.75 16 22 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.82 13.96 55.50 0.77 -25.05 16 25 Si 0.88 19.52 27.74 -169.99 -4.71 14.81 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.58 7.18 -51.93 -0.37 0.20 16 32 H 0.07 0.66 6.35 -51.93 -0.33 0.33 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.83 6.63 -51.93 -0.34 0.48 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.41 4.61 6.23 -40.82 -0.25 4.35 16 37 H 0.16 1.73 6.45 -52.48 -0.34 1.40 16 38 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.27 6.00 -51.93 -0.31 0.96 16 42 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 43 H 0.35 4.75 7.43 -39.29 -0.29 4.46 16 44 H 0.09 1.30 6.26 -51.93 -0.33 0.98 16 45 H 0.05 0.67 6.53 -51.93 -0.34 0.33 16 46 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -34.43 382.28 -7.73 -42.16 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -6.50 Total: 17.61 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.12 Total: 5.67 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.31 Total: -63.29 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.16 Total: -22.72 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.43 -7.73 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567956458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.034 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds