Wall clock time and date at job start Tue Mar 31 2020 19:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47037 * 2 1 4 4 H 1.09001 * 109.47430 * 57.99986 * 3 2 1 5 5 C 1.53007 * 109.47052 * 177.99883 * 3 2 1 6 6 N 1.46504 * 109.46915 * 175.00095 * 5 3 2 7 7 C 1.34783 * 119.99605 * 179.97438 * 6 5 3 8 8 O 1.21551 * 120.00013 * 0.02562 * 7 6 5 9 9 C 1.47839 * 119.99934 * 179.97438 * 7 6 5 10 10 C 1.39558 * 120.55947 * 4.60178 * 9 7 6 11 11 N 1.31662 * 120.56729 * 179.69735 * 10 9 7 12 12 C 1.31953 * 121.87800 * 0.28041 * 11 10 9 13 13 C 1.38312 * 121.08223 * 0.02562 * 12 11 10 14 14 C 1.38401 * 119.30168 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.85111 * 180.02562 * 14 13 12 16 16 N 1.46900 * 109.47593 * 297.99494 * 3 2 1 17 17 C 1.46898 * 111.00012 * 304.20156 * 16 3 2 18 18 C 1.50700 * 109.46863 * 185.66492 * 17 16 3 19 19 O 1.21292 * 120.00288 * 359.97438 * 18 17 16 20 20 N 1.34782 * 120.00042 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00283 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00239 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00033 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00091 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00111 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47642 * 89.99391 * 25 23 21 27 27 H 1.48504 * 109.47035 * 209.99678 * 25 23 21 28 28 H 1.48500 * 109.47051 * 329.99238 * 25 23 21 29 29 H 1.09002 * 109.47099 * 185.24745 * 1 2 3 30 30 H 1.09004 * 109.46813 * 305.24380 * 1 2 3 31 31 H 1.08997 * 109.47406 * 65.24122 * 1 2 3 32 32 H 1.08996 * 109.46637 * 240.00271 * 2 1 3 33 33 H 1.08994 * 109.47209 * 120.00068 * 2 1 3 34 34 H 1.08991 * 109.47310 * 55.00118 * 5 3 2 35 35 H 1.08999 * 109.46727 * 294.99784 * 5 3 2 36 36 H 0.96993 * 120.00472 * 0.02562 * 6 5 3 37 37 H 1.08005 * 119.71827 * 359.97438 * 10 9 7 38 38 H 1.08007 * 119.46273 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.34691 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.46663 * 97.17413 * 15 14 13 41 41 H 1.09004 * 109.47055 * 217.17275 * 15 14 13 42 42 H 1.08995 * 109.47184 * 337.17746 * 15 14 13 43 43 H 1.00902 * 110.99728 * 68.14897 * 16 3 2 44 44 H 1.09001 * 109.47061 * 305.66033 * 17 16 3 45 45 H 1.08990 * 109.47389 * 65.66156 * 17 16 3 46 46 H 0.97004 * 119.99733 * 359.97438 * 20 18 17 47 47 H 0.97004 * 119.99854 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6477 1.9666 0.8715 5 6 3.5692 1.4427 0.0504 6 7 4.0615 2.8174 -0.0699 7 6 5.3866 3.0627 -0.0500 8 8 6.1732 2.1435 0.0672 9 6 5.8835 4.4498 -0.1719 10 6 4.9912 5.5221 -0.2119 11 7 5.4338 6.7579 -0.3145 12 6 6.7222 7.0328 -0.3885 13 6 7.6699 6.0257 -0.3617 14 6 7.2565 4.7092 -0.2549 15 6 8.2591 3.5846 -0.2220 16 7 1.5903 2.1209 -1.2229 17 6 2.0175 1.3852 -2.4205 18 6 1.6613 2.1788 -3.6511 19 8 1.1059 3.2515 -3.5413 20 7 1.9600 1.6966 -4.8738 21 6 1.6356 2.4182 -5.9933 22 1 1.1410 3.3734 -5.8956 23 6 1.9440 1.9213 -7.2537 24 7 1.6334 2.6133 -8.3269 25 14 2.8000 0.2697 -7.4228 26 1 1.7827 -0.8076 -7.5198 27 1 3.6390 0.2701 -8.6481 28 1 3.6593 0.0336 -6.2348 29 1 -0.3633 -1.0234 0.0940 30 1 -0.3633 0.5931 0.8393 31 1 -0.3634 0.4304 -0.9332 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9600 0.8437 -0.7720 35 1 3.9015 1.0194 0.9982 36 1 3.4338 3.5509 -0.1630 37 1 3.9288 5.3371 -0.1537 38 1 7.0421 8.0610 -0.4722 39 1 8.7215 6.2642 -0.4235 40 1 8.4488 3.2972 0.8121 41 1 7.8638 2.7293 -0.7702 42 1 9.1897 3.9138 -0.6842 43 1 0.5899 2.2519 -1.2167 44 1 3.0960 1.2314 -2.3870 45 1 1.5135 0.4193 -2.4526 46 1 2.4045 0.8389 -4.9615 47 1 1.8484 2.2662 -9.2068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567956458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:11 Heat of formation + Delta-G solvation = -60.415919 kcal Electronic energy + Delta-G solvation = -28915.160958 eV Core-core repulsion = 24903.806056 eV Total energy + Delta-G solvation = -4011.354903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76000 -40.58604 -39.95174 -38.65406 -36.01721 -35.50178 -34.61175 -33.75682 -32.79975 -32.58107 -29.94017 -28.83741 -28.07806 -25.97168 -25.47049 -24.17266 -23.01176 -21.80475 -21.47375 -20.90741 -20.16790 -18.72326 -18.27673 -17.76007 -17.28075 -17.13695 -16.68179 -16.55423 -16.33922 -15.96962 -15.81539 -15.46221 -15.15950 -14.96744 -14.85133 -14.66359 -14.37975 -14.23371 -14.02005 -13.78412 -13.68333 -13.50092 -13.44888 -13.19096 -12.98575 -12.91831 -12.70614 -12.43915 -12.25944 -12.01158 -11.86342 -11.65303 -11.51579 -11.07983 -10.61990 -10.43603 -10.38384 -10.25958 -10.24780 -9.95135 -9.34305 -8.42351 -6.02405 -0.36612 0.17799 1.27784 1.32146 1.40899 1.82055 1.96232 2.14845 2.20525 2.73818 2.81399 3.14363 3.32461 3.44679 3.64762 3.70330 3.74317 3.83998 3.98132 4.05701 4.16656 4.18557 4.36260 4.41748 4.43486 4.49947 4.56436 4.59081 4.67829 4.75736 4.78571 4.82084 4.83607 4.94139 5.13583 5.14845 5.25959 5.33556 5.39821 5.48034 5.52152 5.62447 5.89868 6.02609 6.39011 6.51536 6.59003 6.86176 6.88023 7.15966 7.39757 7.96359 8.75337 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.003644 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.533692 B = 7681.297678 C = 9413.799475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.154 4.154 3 C 0.082 3.918 4 H 0.111 0.889 5 C 0.126 3.874 6 N -0.703 5.703 7 C 0.558 3.442 8 O -0.564 6.564 9 C -0.211 4.211 10 C 0.135 3.865 11 N -0.518 5.518 12 C 0.118 3.882 13 C -0.179 4.179 14 C 0.002 3.998 15 C -0.115 4.115 16 N -0.670 5.670 17 C 0.060 3.940 18 C 0.451 3.549 19 O -0.607 6.607 20 N -0.595 5.595 21 C -0.326 4.326 22 H 0.057 0.943 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.960 3.040 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.237 1.237 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.412 0.588 37 H 0.166 0.834 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.353 0.647 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.387 0.613 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.306 -4.154 22.306 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C -0.028 4.028 4 H 0.129 0.871 5 C 0.002 3.998 6 N -0.354 5.354 7 C 0.346 3.654 8 O -0.445 6.445 9 C -0.216 4.216 10 C -0.024 4.024 11 N -0.228 5.228 12 C -0.037 4.037 13 C -0.198 4.198 14 C -0.007 4.007 15 C -0.171 4.171 16 N -0.303 5.303 17 C -0.073 4.073 18 C 0.238 3.762 19 O -0.491 6.491 20 N -0.237 5.237 21 C -0.455 4.455 22 H 0.075 0.925 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.780 3.220 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.161 1.161 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.183 0.817 38 H 0.208 0.792 39 H 0.192 0.808 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.174 0.826 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.222 0.778 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.370 -2.941 22.214 24.691 hybrid contribution -0.223 -1.574 -1.001 1.879 sum 10.147 -4.516 21.213 23.945 Atomic orbital electron populations 1.21762 0.95075 1.02557 1.01688 1.22155 0.96755 0.96655 1.03800 1.21987 0.93139 0.94507 0.93141 0.87109 1.21535 0.93515 0.82465 1.02238 1.45775 1.06150 1.10850 1.72606 1.18188 0.82793 0.88037 0.76420 1.90695 1.55727 1.46449 1.51628 1.20938 0.95697 0.94491 1.10501 1.23166 1.00408 0.87287 0.91517 1.67738 1.18722 1.22226 1.14084 1.23587 0.87507 1.01819 0.90824 1.22425 1.03309 0.91463 1.02595 1.20807 0.93115 0.96832 0.89922 1.21004 0.96664 0.95781 1.03635 1.60113 1.20694 1.49629 0.99874 1.21610 1.02371 0.95271 0.88027 1.20983 0.82575 0.87646 0.84955 1.90543 1.46759 1.24908 1.86875 1.42072 1.55480 1.20722 1.05389 1.19001 1.37994 1.03896 0.84630 0.92486 1.26043 0.98085 1.03175 0.93863 1.69800 1.48097 1.40695 0.98882 0.85433 0.79254 0.77635 0.79647 1.17855 1.20043 1.16091 0.91693 0.91500 0.94127 0.91592 0.89268 0.92391 0.89688 0.75039 0.81699 0.79180 0.80763 0.89919 0.90723 0.89496 0.82625 0.88362 0.90348 0.77825 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.49 71.98 0.68 -1.52 16 2 C -0.15 -2.13 5.00 30.59 0.15 -1.98 16 3 C 0.08 1.37 2.72 44.92 0.12 1.49 16 4 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 5 C 0.13 2.45 4.80 86.38 0.41 2.86 16 6 N -0.70 -16.02 5.34 -465.96 -2.49 -18.51 16 7 C 0.56 14.93 7.74 86.78 0.67 15.61 16 8 O -0.56 -17.21 13.50 -3.88 -0.05 -17.26 16 9 C -0.21 -5.36 5.89 -20.00 -0.12 -5.48 16 10 C 0.13 3.37 10.71 85.04 0.91 4.28 16 11 N -0.52 -13.07 10.35 -194.75 -2.01 -15.09 16 12 C 0.12 2.23 11.17 84.69 0.95 3.18 16 13 C -0.18 -3.07 9.78 22.33 0.22 -2.85 16 14 C 0.00 0.04 5.95 -19.40 -0.12 -0.08 16 15 C -0.11 -2.30 8.82 71.24 0.63 -1.67 16 16 N -0.67 -16.54 5.26 -495.59 -2.61 -19.15 16 17 C 0.06 1.74 5.28 85.56 0.45 2.19 16 18 C 0.45 19.94 7.83 87.66 0.69 20.63 16 19 O -0.61 -32.60 15.90 -3.07 -0.05 -32.65 16 20 N -0.59 -28.20 5.09 -306.98 -1.56 -29.76 16 21 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 22 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.93 -56.71 13.96 21.66 0.30 -56.41 16 25 Si 0.96 39.52 27.74 68.60 1.90 41.42 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.24 -8.45 6.52 99.48 0.65 -7.80 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.04 0.73 7.18 -2.39 -0.02 0.71 16 32 H 0.07 1.00 6.35 -2.39 -0.02 0.99 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.28 6.63 -2.39 -0.02 1.26 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 9.10 6.23 -92.71 -0.58 8.52 16 37 H 0.17 3.69 6.45 -2.91 -0.02 3.67 16 38 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.90 6.00 -2.39 -0.01 1.89 16 42 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 43 H 0.35 9.14 7.43 -89.69 -0.67 8.47 16 44 H 0.10 2.73 6.26 -2.39 -0.01 2.71 16 45 H 0.08 1.90 6.53 -2.39 -0.02 1.88 16 46 H 0.39 15.48 5.76 -92.71 -0.53 14.95 16 47 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -80.53 382.28 -0.40 -80.93 By element: Atomic # 1 Polarization: 49.21 SS G_CDS: -0.80 Total: 48.41 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 6.97 Total: 18.07 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -8.37 Total: -138.92 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.10 Total: -49.91 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.42 kcal Total: -80.53 -0.40 -80.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567956458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.513 kcal (2) G-P(sol) polarization free energy of solvation -80.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds