Wall clock time and date at job start Tue Mar 31 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47640 * 2 1 4 4 C 1.53002 * 109.47070 * 119.99609 * 2 1 3 5 5 H 1.09004 * 109.47372 * 300.00056 * 4 2 1 6 6 C 1.53003 * 109.47481 * 179.97438 * 4 2 1 7 7 N 1.46498 * 109.47224 * 184.99894 * 6 4 2 8 8 C 1.34770 * 119.99894 * 180.02562 * 7 6 4 9 9 O 1.21589 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.47585 * 120.00273 * 180.02562 * 8 7 6 11 11 C 1.39756 * 120.06948 * 359.72573 * 10 8 7 12 12 C 1.37666 * 119.92411 * 179.74214 * 11 10 8 13 13 C 1.39141 * 120.07394 * 0.53552 * 12 11 10 14 14 N 1.39425 * 119.92527 * 179.69661 * 13 12 11 15 15 C 1.34774 * 119.99957 * 144.86579 * 14 13 12 16 16 N 1.34772 * 120.00565 * 184.57830 * 15 14 13 17 17 O 1.21584 * 119.99920 * 4.58055 * 15 14 13 18 18 C 1.39137 * 120.14321 * 359.71916 * 13 12 11 19 19 C 1.37655 * 120.07727 * 0.02562 * 18 13 12 20 20 N 1.46507 * 109.46914 * 59.99857 * 4 2 1 21 21 C 1.36930 * 120.00082 * 274.72438 * 20 4 2 22 22 H 1.08001 * 120.00169 * 0.02562 * 21 20 4 23 23 C 1.38816 * 120.00359 * 179.97438 * 21 20 4 24 24 N 1.31619 * 120.00125 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99436 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47244 * 90.00146 * 25 23 21 27 27 H 1.48510 * 109.46715 * 209.99868 * 25 23 21 28 28 H 1.48498 * 109.47160 * 329.99457 * 25 23 21 29 29 H 1.08999 * 109.47399 * 300.00464 * 1 2 3 30 30 H 1.09005 * 109.46738 * 60.00182 * 1 2 3 31 31 H 1.08993 * 109.47811 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47399 * 239.99536 * 2 1 3 33 33 H 1.08996 * 109.47484 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46907 * 299.99715 * 3 2 1 35 35 H 1.08999 * 109.47104 * 59.99355 * 3 2 1 36 36 H 1.09000 * 109.47190 * 305.00262 * 6 4 2 37 37 H 1.09000 * 109.46616 * 65.00113 * 6 4 2 38 38 H 0.97001 * 119.99958 * 0.02562 * 7 6 4 39 39 H 1.08002 * 120.04126 * 359.97178 * 11 10 8 40 40 H 1.08001 * 119.96422 * 180.24970 * 12 11 10 41 41 H 0.97003 * 120.00198 * 324.86840 * 14 13 12 42 42 H 0.97003 * 119.99586 * 0.02562 * 16 15 14 43 43 H 0.96998 * 120.00518 * 179.97438 * 16 15 14 44 44 H 1.08004 * 119.95712 * 180.02562 * 18 13 12 45 45 H 1.07996 * 120.03522 * 179.97438 * 19 18 13 46 46 H 0.97002 * 119.99550 * 95.00330 * 20 4 2 47 47 H 0.97001 * 119.99796 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5700 -0.7218 1.2491 7 7 4.0582 -1.5139 2.3806 8 6 5.3831 -1.6552 2.5824 9 8 6.1733 -1.1248 1.8257 10 6 5.8751 -2.4537 3.7220 11 6 4.9682 -3.0592 4.5961 12 6 5.4303 -3.8078 5.6550 13 6 6.7986 -3.9526 5.8620 14 7 7.2632 -4.7062 6.9391 15 6 8.3877 -5.4384 6.8140 16 7 8.7867 -6.2384 7.8225 17 8 9.0423 -5.3773 5.7912 18 6 7.7041 -3.3466 4.9967 19 6 7.2487 -2.6011 3.9329 20 7 1.5515 -2.1024 1.2494 21 6 0.3123 -2.3904 1.7557 22 1 -0.3053 -1.5993 2.1546 23 6 -0.1508 -3.6991 1.7553 24 7 -1.3421 -3.9758 2.2415 25 14 0.9171 -5.0673 1.0646 26 1 1.7632 -5.6296 2.1477 27 1 0.0513 -6.1373 0.5069 28 1 1.7855 -4.5229 -0.0100 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.9330 -1.1564 0.3177 37 1 3.9336 0.3019 1.3384 38 1 3.4277 -1.9367 2.9845 39 1 3.9060 -2.9432 4.4389 40 1 4.7300 -4.2793 6.3285 41 1 6.7770 -4.7035 7.7785 42 1 8.2643 -6.2874 8.6384 43 1 9.5958 -6.7657 7.7324 44 1 8.7655 -3.4614 5.1599 45 1 7.9522 -2.1308 3.2619 46 1 2.1077 -2.8135 0.8944 47 1 -1.6655 -4.8903 2.2416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568469559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:29 Heat of formation + Delta-G solvation = -57.809391 kcal Electronic energy + Delta-G solvation = -28541.446650 eV Core-core repulsion = 24530.204774 eV Total energy + Delta-G solvation = -4011.241875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81265 -40.97134 -39.37145 -38.66258 -35.89147 -35.38782 -34.93465 -34.66373 -32.72112 -32.03268 -31.05445 -29.32282 -27.56676 -25.71471 -24.77960 -23.90392 -23.05013 -22.40055 -21.46158 -20.91824 -19.73538 -19.48306 -19.13496 -18.59795 -17.32922 -17.03203 -16.94951 -16.48927 -16.14770 -16.06550 -15.77749 -15.72989 -15.22070 -15.06523 -14.92654 -14.69563 -14.55757 -14.32518 -14.22405 -13.72121 -13.65618 -13.45370 -12.94569 -12.90582 -12.83189 -12.48250 -12.34357 -12.30634 -11.93567 -11.74837 -11.65632 -11.49573 -11.32817 -11.30997 -11.03310 -10.82850 -10.76529 -10.09390 -10.04531 -9.25674 -9.21326 -7.93439 -5.25090 -0.26122 0.35665 1.40269 1.44094 1.48173 1.64347 1.72110 2.09043 2.21674 2.52848 2.85312 3.37111 3.44494 3.58223 3.77483 3.79461 3.89739 3.93404 4.25158 4.27173 4.29776 4.37056 4.44783 4.50179 4.63078 4.73465 4.92709 4.97018 4.98284 5.05141 5.07779 5.15799 5.17864 5.25962 5.29111 5.34571 5.39162 5.50820 5.63760 5.76759 5.77975 5.89194 5.89713 5.92326 6.29181 6.54538 6.88727 7.14562 7.18206 7.47045 7.89433 8.08254 9.27492 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.003036 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.307550 B = 9219.869617 C =10868.257813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.176 3.824 5 H 0.062 0.938 6 C 0.118 3.882 7 N -0.710 5.710 8 C 0.555 3.445 9 O -0.583 6.583 10 C -0.168 4.168 11 C -0.064 4.064 12 C -0.145 4.145 13 C 0.189 3.811 14 N -0.669 5.669 15 C 0.698 3.302 16 N -0.836 5.836 17 O -0.623 6.623 18 C -0.141 4.141 19 C -0.049 4.049 20 N -0.747 5.747 21 C -0.201 4.201 22 H 0.071 0.929 23 C -0.053 4.053 24 N -0.980 5.980 25 Si 0.932 3.068 26 H -0.277 1.277 27 H -0.307 1.307 28 H -0.266 1.266 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.430 0.570 42 H 0.418 0.582 43 H 0.425 0.575 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.362 0.638 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.052 0.961 13.295 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.067 3.933 5 H 0.080 0.920 6 C -0.006 4.006 7 N -0.361 5.361 8 C 0.344 3.656 9 O -0.465 6.465 10 C -0.172 4.172 11 C -0.083 4.083 12 C -0.165 4.165 13 C 0.092 3.908 14 N -0.319 5.319 15 C 0.397 3.603 16 N -0.406 5.406 17 O -0.502 6.502 18 C -0.161 4.161 19 C -0.068 4.068 20 N -0.389 5.389 21 C -0.332 4.332 22 H 0.089 0.911 23 C -0.245 4.245 24 N -0.631 5.631 25 Si 0.762 3.238 26 H -0.203 1.203 27 H -0.234 1.234 28 H -0.191 1.191 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.249 0.751 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.269 0.731 42 H 0.250 0.750 43 H 0.259 0.741 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.195 0.805 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.840 1.459 12.045 21.575 hybrid contribution -0.291 -1.650 0.276 1.698 sum 17.549 -0.191 12.321 21.443 Atomic orbital electron populations 1.21711 0.95567 1.01703 1.00083 1.21602 0.96079 0.96565 0.98417 1.21856 1.01068 0.94799 1.02206 1.20685 0.90105 0.85123 0.97351 0.91956 1.21729 0.94119 0.96180 0.88604 1.45934 1.06545 1.52773 1.30882 1.18502 0.82306 0.80082 0.84710 1.90715 1.56241 1.50753 1.48763 1.19894 0.94923 1.04332 0.98011 1.21344 0.99811 0.94208 0.92930 1.21075 0.93489 1.02055 0.99904 1.17725 0.92433 0.91484 0.89189 1.42279 1.27106 1.47082 1.15407 1.16197 0.80806 0.79301 0.84019 1.42753 1.32079 1.47527 1.18204 1.90990 1.57197 1.70952 1.31109 1.21234 1.00857 0.97753 0.96276 1.21114 0.94110 0.95405 0.96217 1.42854 1.17316 1.04399 1.74376 1.18938 0.92153 0.92940 1.29138 0.91086 1.25187 0.97493 0.99094 1.02718 1.69836 1.19884 1.19139 1.54280 0.85758 0.78597 0.80402 0.79010 1.20310 1.23421 1.19097 0.94028 0.93041 0.93366 0.92318 0.91968 0.92041 0.92375 0.92437 0.89490 0.75148 0.84082 0.81801 0.73052 0.74993 0.74060 0.84386 0.85231 0.80545 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.27 71.98 0.60 -4.05 16 2 C -0.11 -3.27 2.69 -10.80 -0.03 -3.29 16 3 C -0.14 -3.43 8.84 71.98 0.64 -2.80 16 4 C 0.18 5.89 2.18 44.99 0.10 5.99 16 5 H 0.06 2.14 8.08 -2.38 -0.02 2.12 16 6 C 0.12 3.63 4.73 86.38 0.41 4.04 16 7 N -0.71 -22.07 5.34 -466.22 -2.49 -24.56 16 8 C 0.55 18.42 7.76 86.71 0.67 19.09 16 9 O -0.58 -22.66 16.34 -4.00 -0.07 -22.72 16 10 C -0.17 -4.84 5.88 -20.08 -0.12 -4.95 16 11 C -0.06 -1.53 9.53 22.50 0.21 -1.32 16 12 C -0.14 -2.80 9.94 22.35 0.22 -2.58 16 13 C 0.19 3.88 6.30 38.37 0.24 4.12 16 14 N -0.67 -9.02 5.32 -317.17 -1.69 -10.71 16 15 C 0.70 11.79 8.67 179.06 1.55 13.35 16 16 N -0.84 -5.36 8.88 -184.76 -1.64 -7.00 16 17 O -0.62 -17.14 14.59 -3.98 -0.06 -17.19 16 18 C -0.14 -3.58 8.67 22.35 0.19 -3.38 16 19 C -0.05 -1.37 9.58 22.50 0.22 -1.15 16 20 N -0.75 -30.84 4.24 -322.91 -1.37 -32.21 16 21 C -0.20 -10.10 8.06 84.04 0.68 -9.42 16 22 H 0.07 3.90 7.65 -2.91 -0.02 3.88 16 23 C -0.05 -2.92 5.50 84.86 0.47 -2.45 16 24 N -0.98 -59.14 13.97 21.65 0.30 -58.84 16 25 Si 0.93 43.81 27.73 68.60 1.90 45.71 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 28 H -0.27 -11.79 6.52 99.48 0.65 -11.14 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.05 2.07 6.03 -2.39 -0.01 2.05 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 34 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 2.46 6.71 -2.39 -0.02 2.44 16 38 H 0.41 12.38 6.16 -92.71 -0.57 11.81 16 39 H 0.14 3.23 6.39 -2.91 -0.02 3.21 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.43 2.09 8.83 -92.71 -0.82 1.27 16 42 H 0.42 -0.45 8.85 -92.71 -0.82 -1.27 16 43 H 0.43 2.16 8.93 -92.71 -0.83 1.33 16 44 H 0.14 3.71 6.21 -2.91 -0.02 3.69 16 45 H 0.13 3.74 7.64 -2.91 -0.02 3.72 16 46 H 0.36 15.23 5.66 -92.71 -0.52 14.70 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -76.23 382.64 -1.61 -77.84 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -2.56 Total: 38.50 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.05 Total: 11.18 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -6.88 Total: -133.32 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.12 Total: -39.92 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Total: -76.23 -1.61 -77.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568469559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.035 kcal (2) G-P(sol) polarization free energy of solvation -76.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds