Wall clock time and date at job start Tue Mar 31 2020 17:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47111 * 2 1 4 4 C 1.52995 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47096 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.47217 * 54.99550 * 5 4 3 7 7 C 1.53000 * 109.47577 * 175.00188 * 5 4 3 8 8 N 1.46495 * 109.47571 * 174.99805 * 7 5 4 9 9 C 1.36936 * 120.00148 * 179.97438 * 8 7 5 10 10 H 1.07994 * 119.99892 * 0.02562 * 9 8 7 11 11 C 1.38816 * 119.99823 * 179.97438 * 9 8 7 12 12 N 1.31619 * 119.99732 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00047 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.46798 * 90.00455 * 13 11 9 15 15 H 1.48501 * 109.46853 * 209.99764 * 13 11 9 16 16 H 1.48496 * 109.47393 * 330.00036 * 13 11 9 17 17 N 1.46506 * 109.47136 * 295.00206 * 5 4 3 18 18 C 1.34774 * 120.00250 * 84.99550 * 17 5 4 19 19 O 1.21525 * 119.99816 * 0.02562 * 18 17 5 20 20 C 1.47982 * 119.99882 * 180.02562 * 18 17 5 21 21 C 1.39840 * 120.59612 * 55.05458 * 20 18 17 22 22 C 1.38457 * 118.35017 * 180.27533 * 21 20 18 23 23 C 1.38591 * 119.45898 * 359.47453 * 22 21 20 24 24 N 1.31643 * 121.17775 * 0.53809 * 23 22 21 25 25 C 1.32458 * 121.79897 * 359.74099 * 24 23 22 26 26 C 1.48310 * 119.80292 * 179.97438 * 25 24 23 27 27 N 1.34779 * 119.99789 * 5.77203 * 26 25 24 28 28 O 1.21489 * 120.00433 * 185.76649 * 26 25 24 29 29 H 1.09001 * 109.47296 * 299.99839 * 1 2 3 30 30 H 1.08996 * 109.47421 * 60.00302 * 1 2 3 31 31 H 1.08999 * 109.47245 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47296 * 240.00161 * 2 1 3 33 33 H 1.08996 * 109.47421 * 119.99698 * 2 1 3 34 34 H 1.09001 * 109.46909 * 59.99924 * 3 2 1 35 35 H 1.08996 * 109.46731 * 300.00121 * 3 2 1 36 36 H 1.09001 * 109.47296 * 60.00161 * 4 3 2 37 37 H 1.09005 * 109.46998 * 300.00137 * 4 3 2 38 38 H 1.08999 * 109.46816 * 294.99710 * 7 5 4 39 39 H 1.08995 * 109.47202 * 54.99465 * 7 5 4 40 40 H 0.97009 * 119.99782 * 0.02562 * 8 7 5 41 41 H 0.97006 * 119.99750 * 179.97438 * 12 11 9 42 42 H 0.97000 * 119.99687 * 265.00147 * 17 5 4 43 43 H 1.08002 * 120.82270 * 359.97438 * 21 20 18 44 44 H 1.07999 * 120.27477 * 179.75039 * 22 21 20 45 45 H 1.07998 * 119.41493 * 180.28148 * 23 22 21 46 46 H 0.97001 * 119.99631 * 359.97438 * 27 26 25 47 47 H 0.96995 * 120.00185 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4236 0.8423 7 6 5.6048 2.8869 0.1250 8 7 6.1029 4.2594 0.0058 9 6 7.4467 4.5096 0.0876 10 1 8.1394 3.6951 0.2395 11 6 7.9187 5.8101 -0.0259 12 7 9.2104 6.0505 0.0521 13 14 6.7207 7.2189 -0.2894 14 1 6.2894 7.7545 1.0268 15 1 7.3853 8.2948 -1.0679 16 1 5.5352 6.7274 -1.0365 17 7 3.6917 3.5408 -1.2513 18 6 2.4744 4.1077 -1.3656 19 8 1.6988 4.0753 -0.4306 20 6 2.0822 4.7696 -2.6297 21 6 2.1410 4.0776 -3.8435 22 6 1.7687 4.7437 -4.9988 23 6 1.3423 6.0600 -4.9193 24 7 1.2945 6.6924 -3.7657 25 6 1.6447 6.1037 -2.6320 26 6 1.5743 6.8584 -1.3572 27 7 1.0464 8.0983 -1.3363 28 8 1.9924 6.3589 -0.3316 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9329 0.9289 -0.8909 37 1 3.9336 0.9286 0.8891 38 1 5.8902 2.4798 1.0950 39 1 6.0350 2.2742 -0.6671 40 1 5.4807 4.9911 -0.1303 41 1 9.5403 6.9593 -0.0276 42 1 4.3109 3.5669 -1.9975 43 1 2.4733 3.0506 -3.8794 44 1 1.8061 4.2404 -5.9536 45 1 1.0477 6.5774 -5.8203 46 1 0.7128 8.4971 -2.1552 47 1 0.9999 8.5917 -0.5026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570816003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:40 Heat of formation + Delta-G solvation = -61.680841 kcal Electronic energy + Delta-G solvation = -29981.706338 eV Core-core repulsion = 25970.296584 eV Total energy + Delta-G solvation = -4011.409754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.08310 -40.51162 -39.82184 -37.90293 -36.35856 -35.16683 -34.96133 -33.85267 -33.15772 -32.63114 -31.57748 -29.01376 -26.38879 -25.70239 -25.32602 -23.56073 -22.71985 -22.02075 -21.79176 -21.44702 -19.90259 -19.35895 -18.48729 -18.33269 -17.60180 -17.19868 -16.75352 -16.35818 -16.24315 -16.08716 -15.95058 -15.61375 -15.32584 -15.02501 -14.84306 -14.59977 -14.54120 -14.30078 -14.23199 -13.86807 -13.72212 -13.52826 -13.30429 -13.02052 -12.96042 -12.62173 -12.19786 -11.98671 -11.91096 -11.86560 -11.66871 -11.45050 -11.35069 -11.13192 -11.08435 -10.96320 -10.77865 -10.63183 -10.29980 -9.91884 -9.35043 -8.09251 -5.40137 -0.62858 -0.05050 1.25176 1.30793 1.36033 1.62067 1.73223 2.18181 2.25113 2.38451 2.73748 3.14586 3.23516 3.42987 3.63412 3.75506 3.82272 3.86045 3.91465 4.07405 4.14598 4.28848 4.32972 4.39571 4.42417 4.51421 4.60032 4.83484 4.84936 4.89064 4.92960 4.96051 4.98098 5.09174 5.13747 5.20733 5.32847 5.41538 5.44745 5.57043 5.62376 5.72043 5.74036 6.15926 6.20801 6.52978 6.62660 7.01297 7.16443 7.30845 7.78504 7.95890 9.12312 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007515 B = 0.005639 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.957165 B = 4964.570714 C = 7300.917372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.115 4.115 5 C 0.147 3.853 6 H 0.055 0.945 7 C 0.148 3.852 8 N -0.759 5.759 9 C -0.225 4.225 10 H 0.071 0.929 11 C -0.050 4.050 12 N -0.976 5.976 13 Si 0.943 3.057 14 H -0.293 1.293 15 H -0.288 1.288 16 H -0.272 1.272 17 N -0.706 5.706 18 C 0.563 3.437 19 O -0.533 6.533 20 C -0.144 4.144 21 C -0.055 4.055 22 C -0.126 4.126 23 C 0.109 3.891 24 N -0.467 5.467 25 C 0.089 3.911 26 C 0.548 3.452 27 N -0.818 5.818 28 O -0.549 6.549 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.052 0.948 40 H 0.361 0.639 41 H 0.258 0.742 42 H 0.406 0.594 43 H 0.173 0.827 44 H 0.197 0.803 45 H 0.211 0.789 46 H 0.421 0.579 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.095 -6.622 -14.907 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.142 4.142 4 C -0.154 4.154 5 C 0.042 3.958 6 H 0.074 0.926 7 C 0.022 3.978 8 N -0.405 5.405 9 C -0.356 4.356 10 H 0.089 0.911 11 C -0.242 4.242 12 N -0.627 5.627 13 Si 0.773 3.227 14 H -0.221 1.221 15 H -0.214 1.214 16 H -0.198 1.198 17 N -0.358 5.358 18 C 0.348 3.652 19 O -0.410 6.410 20 C -0.151 4.151 21 C -0.080 4.080 22 C -0.146 4.146 23 C -0.050 4.050 24 N -0.179 5.179 25 C -0.050 4.050 26 C 0.331 3.669 27 N -0.383 5.383 28 O -0.425 6.425 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.194 0.806 41 H 0.067 0.933 42 H 0.241 0.759 43 H 0.190 0.810 44 H 0.214 0.786 45 H 0.228 0.772 46 H 0.253 0.747 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -22.403 -6.299 -13.557 26.933 hybrid contribution 0.158 1.123 0.092 1.138 sum -22.245 -5.176 -13.465 26.513 Atomic orbital electron populations 1.21737 0.96018 1.01808 1.01102 1.21535 0.95829 0.95815 1.02518 1.21540 0.94748 0.96703 1.01185 1.21905 0.95881 0.93671 1.03952 1.21168 0.93841 0.94473 0.86313 0.92634 1.21136 0.90843 0.85744 1.00081 1.42800 1.03690 1.04840 1.89148 1.19097 0.83603 0.93451 1.39482 0.91134 1.25217 0.96681 0.99137 1.03173 1.69827 1.13055 1.20305 1.59502 0.85609 0.78880 0.80661 0.77589 1.22058 1.21376 1.19783 1.45829 1.15611 1.57353 1.16984 1.18068 0.82429 0.77640 0.87031 1.90769 1.52414 1.58134 1.39645 1.21012 1.02696 0.95369 0.96022 1.22150 0.94502 1.01669 0.89728 1.22889 0.95589 0.95574 1.00513 1.23816 0.92877 0.92823 0.95522 1.67562 1.13904 1.38125 0.98310 1.20976 0.99467 0.91418 0.93139 1.18421 0.78155 0.82831 0.87531 1.43418 1.63225 1.15776 1.15925 1.90973 1.48118 1.68842 1.34604 0.93951 0.93469 0.91388 0.90956 0.91630 0.94425 0.93228 0.89562 0.89842 0.93859 0.93054 0.80621 0.93257 0.75881 0.81005 0.78633 0.77220 0.74701 0.75661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.20 16 2 C -0.12 -2.41 5.93 30.60 0.18 -2.22 16 3 C -0.10 -2.75 3.82 30.60 0.12 -2.64 16 4 C -0.12 -2.91 4.89 30.59 0.15 -2.76 16 5 C 0.15 4.90 2.42 44.99 0.11 5.01 16 6 H 0.06 2.26 7.58 -2.38 -0.02 2.24 16 7 C 0.15 5.61 5.82 86.38 0.50 6.11 16 8 N -0.76 -37.12 5.24 -343.47 -1.80 -38.92 16 9 C -0.23 -13.06 10.47 84.03 0.88 -12.18 16 10 H 0.07 4.33 8.06 -2.91 -0.02 4.31 16 11 C -0.05 -3.03 5.50 84.86 0.47 -2.57 16 12 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 13 Si 0.94 49.82 27.74 68.60 1.90 51.73 16 14 H -0.29 -15.85 7.11 99.48 0.71 -15.14 16 15 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 16 H -0.27 -13.93 6.52 99.48 0.65 -13.28 16 17 N -0.71 -22.56 4.46 -445.28 -1.98 -24.54 16 18 C 0.56 19.29 4.49 86.83 0.39 19.67 16 19 O -0.53 -21.93 11.86 19.20 0.23 -21.71 16 20 C -0.14 -4.03 5.68 -19.78 -0.11 -4.14 16 21 C -0.05 -0.93 9.92 22.71 0.23 -0.70 16 22 C -0.13 -1.28 10.10 22.41 0.23 -1.06 16 23 C 0.11 1.36 11.17 84.81 0.95 2.31 16 24 N -0.47 -9.95 9.55 -183.99 -1.76 -11.71 16 25 C 0.09 2.58 6.78 42.26 0.29 2.86 16 26 C 0.55 18.64 7.99 86.92 0.69 19.33 16 27 N -0.82 -19.55 8.86 -175.29 -1.55 -21.11 16 28 O -0.55 -24.18 13.79 19.31 0.27 -23.92 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.04 1.21 7.84 -2.39 -0.02 1.19 16 35 H 0.05 1.43 5.65 -2.39 -0.01 1.42 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.36 18.32 5.20 -92.70 -0.48 17.84 16 41 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 42 H 0.41 11.84 8.58 -92.71 -0.80 11.05 16 43 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 46 H 0.42 7.54 8.18 -92.71 -0.76 6.78 16 47 H 0.41 8.71 8.93 -92.71 -0.83 7.89 16 Total: -1.00 -87.22 386.86 -0.51 -87.73 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -1.89 Total: 40.60 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 5.78 Total: 24.83 kcal Atomic # 7 Polarization: -152.47 SS G_CDS: -6.79 Total: -159.26 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: 0.49 Total: -45.62 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.90 Total: 51.73 kcal Total: -87.22 -0.51 -87.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570816003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.049 kcal (2) G-P(sol) polarization free energy of solvation -87.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds