Wall clock time and date at job start Tue Mar 31 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50711 * 120.00010 * 2 1 4 4 N 1.46499 * 109.47078 * 236.42871 * 3 2 1 5 5 C 1.36451 * 127.13411 * 84.43413 * 4 3 2 6 6 N 1.38583 * 126.47723 * 0.02562 * 5 4 3 7 7 C 1.47436 * 111.00062 * 72.06669 * 6 5 4 8 8 C 1.54318 * 107.23174 * 123.25802 * 7 6 5 9 9 C 1.55140 * 103.01951 * 22.28523 * 8 7 6 10 10 H 1.09005 * 110.98611 * 82.43656 * 9 8 7 11 11 C 1.50699 * 110.98972 * 206.21152 * 9 8 7 12 12 O 1.20829 * 119.99559 * 118.54851 * 11 9 8 13 13 O 1.34220 * 120.00280 * 298.54814 * 11 9 8 14 14 C 1.47842 * 110.99944 * 192.91179 * 6 5 4 15 15 N 1.31219 * 107.05044 * 179.87558 * 5 4 3 16 16 N 1.28529 * 109.85889 * 0.39872 * 15 5 4 17 17 C 1.30288 * 110.05489 * 359.74987 * 16 15 5 18 18 C 1.50703 * 126.34683 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47170 * 114.57626 * 18 17 16 20 20 C 1.52997 * 109.47076 * 234.57444 * 18 17 16 21 21 C 1.50695 * 109.47011 * 354.57444 * 18 17 16 22 22 H 1.08001 * 120.00446 * 0.02562 * 21 18 17 23 23 C 1.37880 * 119.99718 * 179.97438 * 21 18 17 24 24 N 1.31514 * 120.00190 * 0.02562 * 23 21 18 25 25 Si 1.86806 * 119.99677 * 179.97438 * 23 21 18 26 26 H 1.48497 * 109.46995 * 60.00226 * 25 23 21 27 27 H 1.48499 * 109.46720 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47018 * 299.99771 * 25 23 21 29 29 H 1.08002 * 120.00409 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00059 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00392 * 179.72637 * 2 1 3 32 32 H 1.09005 * 109.46581 * 356.42842 * 3 2 1 33 33 H 1.08990 * 109.46677 * 116.42601 * 3 2 1 34 34 H 1.08998 * 109.88902 * 242.66735 * 7 6 5 35 35 H 1.09001 * 109.88980 * 3.69447 * 7 6 5 36 36 H 1.09002 * 110.70246 * 140.66928 * 8 7 6 37 37 H 1.08999 * 110.70569 * 263.89958 * 8 7 6 38 38 H 0.96702 * 116.99897 * 179.97438 * 13 11 9 39 39 H 1.09000 * 110.37709 * 332.46905 * 14 6 5 40 40 H 1.09001 * 110.37382 * 94.80833 * 14 6 5 41 41 H 1.08997 * 109.47283 * 53.83328 * 19 18 17 42 42 H 1.08999 * 109.47391 * 173.84039 * 19 18 17 43 43 H 1.09002 * 109.46911 * 293.83705 * 19 18 17 44 44 H 1.09002 * 109.47166 * 58.52992 * 20 18 17 45 45 H 1.08998 * 109.47363 * 178.53324 * 20 18 17 46 46 H 1.09004 * 109.47346 * 298.53902 * 20 18 17 47 47 H 0.96996 * 120.00040 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9691 1.3462 -1.1508 5 6 2.6642 1.7244 -2.4259 6 7 1.4275 2.1481 -2.8862 7 6 1.1095 3.4964 -2.3816 8 6 0.8443 4.3931 -3.6092 9 6 0.4697 3.3708 -4.7144 10 1 -0.5799 3.0854 -4.6426 11 6 0.7855 3.9158 -6.0834 12 8 1.5856 3.3489 -6.7894 13 8 0.1782 5.0309 -6.5184 14 6 1.3942 2.1784 -4.3639 15 7 3.7639 1.6144 -3.1333 16 7 4.7210 1.1882 -2.3888 17 6 4.2937 1.0077 -1.1713 18 6 5.1083 0.5164 -0.0025 19 6 5.2222 1.6278 1.0429 20 6 4.4232 -0.7015 0.6206 21 6 6.4854 0.1300 -0.4770 22 1 6.7451 0.2305 -1.5205 23 6 7.4143 -0.3509 0.4213 24 7 7.0984 -0.4729 1.6921 25 14 9.1212 -0.8306 -0.1670 26 1 9.7861 0.3510 -0.7728 27 1 9.9242 -1.3134 0.9850 28 1 9.0101 -1.9100 -1.1807 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0045 32 1 1.3568 2.1327 -0.0640 33 1 2.6411 1.3911 0.9202 34 1 0.2204 3.4567 -1.7524 35 1 1.9514 3.8864 -1.8095 36 1 0.0152 5.0741 -3.4170 37 1 1.7427 4.9458 -3.8840 38 1 0.4135 5.3423 -7.4031 39 1 2.3950 2.3441 -4.7628 40 1 0.9787 1.2489 -4.7533 41 1 4.2258 1.9830 1.3056 42 1 5.7161 1.2396 1.9336 43 1 5.8059 2.4526 0.6341 44 1 4.3185 -1.4837 -0.1313 45 1 5.0255 -1.0727 1.4497 46 1 3.4372 -0.4157 0.9871 47 1 7.7520 -0.8108 2.3241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588472139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:24 Heat of formation + Delta-G solvation = 30.612473 kcal Electronic energy + Delta-G solvation = -30181.814224 eV Core-core repulsion = 26174.406609 eV Total energy + Delta-G solvation = -4007.407616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38807 -40.74349 -38.70751 -36.37006 -36.28199 -35.22146 -32.75841 -32.26084 -30.98793 -29.58920 -27.89940 -26.59169 -25.92533 -25.15072 -24.41959 -22.50206 -21.81309 -20.74686 -20.28506 -20.06378 -18.94347 -18.37673 -17.55514 -16.90368 -16.21678 -15.96701 -15.68656 -15.28799 -15.01319 -14.84118 -14.60546 -13.85292 -13.69750 -13.59507 -13.48708 -13.19547 -12.75907 -12.54225 -12.34163 -12.08211 -11.83424 -11.81242 -11.61612 -11.45929 -11.35045 -11.23527 -11.05508 -10.87668 -10.70365 -10.64914 -10.61294 -10.16167 -10.10832 -9.95023 -9.80453 -9.56855 -9.39837 -9.15957 -8.69349 -8.38261 -7.75837 -6.02034 -4.07048 1.92560 2.07747 2.41644 2.57362 3.04797 3.38341 3.40157 3.47614 3.65270 3.92120 4.15319 4.18184 4.45949 4.59704 4.80994 4.88255 4.95749 4.97088 5.11520 5.24215 5.27621 5.32186 5.42129 5.45872 5.54275 5.63935 5.69052 5.80591 5.89512 5.93797 6.17210 6.22419 6.39897 6.53874 6.56577 6.60516 6.65062 6.68065 6.75002 6.81355 7.13472 7.20040 7.37249 7.59167 7.61740 7.79529 7.82740 8.10029 8.32193 8.99684 9.54461 9.65037 11.01934 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.003472 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.283452 B = 8063.065400 C = 9276.358752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.165 4.165 3 C 0.138 3.862 4 N -0.474 5.474 5 C 0.310 3.690 6 N -0.440 5.440 7 C 0.043 3.957 8 C -0.123 4.123 9 C -0.093 4.093 10 H 0.126 0.874 11 C 0.489 3.511 12 O -0.502 6.502 13 O -0.516 6.516 14 C 0.069 3.931 15 N -0.325 5.325 16 N -0.286 5.286 17 C 0.243 3.757 18 C 0.147 3.853 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.493 4.493 22 H 0.076 0.924 23 C 0.064 3.936 24 N -0.896 5.896 25 Si 0.900 3.100 26 H -0.276 1.276 27 H -0.289 1.289 28 H -0.276 1.276 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.411 0.589 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.007 0.993 42 H 0.095 0.905 43 H 0.035 0.965 44 H 0.029 0.971 45 H 0.098 0.902 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.819 9.050 -4.713 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.016 3.984 4 N -0.168 5.168 5 C -0.047 4.047 6 N -0.164 5.164 7 C -0.085 4.085 8 C -0.161 4.161 9 C -0.113 4.113 10 H 0.143 0.857 11 C 0.330 3.670 12 O -0.389 6.389 13 O -0.328 6.328 14 C -0.058 4.058 15 N -0.168 5.168 16 N -0.122 5.122 17 C -0.024 4.024 18 C 0.144 3.856 19 C -0.188 4.188 20 C -0.198 4.198 21 C -0.531 4.531 22 H 0.095 0.905 23 C -0.137 4.137 24 N -0.535 5.535 25 Si 0.728 3.272 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.202 1.202 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.270 0.730 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.026 0.974 42 H 0.114 0.886 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.116 0.884 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.017 8.395 -5.360 20.587 hybrid contribution 0.534 0.339 -0.071 0.637 sum -17.483 8.734 -5.431 20.284 Atomic orbital electron populations 1.23774 0.95426 1.01836 0.99663 1.23231 0.96165 0.98557 1.00405 1.20996 0.92301 0.96604 0.88536 1.46265 1.10858 1.51297 1.08419 1.22323 0.92170 1.06151 0.84051 1.60297 1.22036 1.24272 1.09822 1.22975 1.02185 0.86017 0.97275 1.22735 1.03105 0.97155 0.93152 1.22110 1.03463 0.96953 0.88735 0.85667 1.23042 0.77413 0.77727 0.88857 1.90793 1.32484 1.58478 1.57124 1.84512 1.66139 1.42462 1.39719 1.22911 1.01255 0.97203 0.84422 1.74493 0.95517 1.20108 1.26728 1.74097 1.20649 1.17335 1.00151 1.26204 0.79900 0.97993 0.98315 1.16911 0.92135 0.91961 0.84600 1.21928 0.97107 0.97744 1.01979 1.22078 0.97455 0.98084 1.02134 1.21045 0.94279 1.41922 0.95892 0.90545 1.24857 0.98725 0.95307 0.94791 1.69774 1.34871 1.46951 1.01896 0.86504 0.83622 0.79083 0.77966 1.20165 1.21480 1.20188 0.88561 0.88175 0.86213 0.89650 0.87085 0.89105 0.91590 0.88773 0.90373 0.73038 0.88464 0.88608 0.97420 0.88632 0.94588 0.95170 0.88396 0.96271 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 14.32 29.02 0.42 -1.40 16 2 C -0.16 -2.24 8.85 -36.02 -0.32 -2.56 16 3 C 0.14 2.01 5.58 -5.19 -0.03 1.98 16 4 N -0.47 -8.81 2.79 -115.36 -0.32 -9.13 16 5 C 0.31 5.73 6.66 -318.87 -2.12 3.61 16 6 N -0.44 -6.13 5.20 -171.32 -0.89 -7.03 16 7 C 0.04 0.45 5.95 -2.84 -0.02 0.44 16 8 C -0.12 -1.06 6.39 -24.91 -0.16 -1.22 16 9 C -0.09 -0.87 3.54 -89.64 -0.32 -1.19 16 10 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 11 C 0.49 5.08 7.64 36.01 0.27 5.35 16 12 O -0.50 -7.20 16.56 -18.75 -0.31 -7.51 16 13 O -0.52 -3.76 13.41 -39.23 -0.53 -4.29 16 14 C 0.07 0.92 5.65 -2.30 -0.01 0.91 16 15 N -0.32 -7.28 10.71 30.31 0.32 -6.95 16 16 N -0.29 -7.15 11.00 32.99 0.36 -6.78 16 17 C 0.24 5.54 6.34 -154.02 -0.98 4.57 16 18 C 0.15 3.48 0.47 -156.81 -0.07 3.41 16 19 C -0.13 -2.89 8.06 37.16 0.30 -2.59 16 20 C -0.14 -3.09 7.66 37.16 0.28 -2.80 16 21 C -0.49 -13.35 7.91 -34.44 -0.27 -13.63 16 22 H 0.08 2.21 6.95 -52.49 -0.36 1.84 16 23 C 0.06 1.69 5.15 -17.82 -0.09 1.59 16 24 N -0.90 -23.54 9.41 55.43 0.52 -23.02 16 25 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 29 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 30 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.84 6.82 -52.49 -0.36 1.48 16 32 H 0.09 1.00 6.91 -51.93 -0.36 0.65 16 33 H 0.11 1.66 4.60 -51.93 -0.24 1.43 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.81 7.57 -51.93 -0.39 0.42 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 38 H 0.41 1.40 9.10 45.56 0.41 1.81 16 39 H 0.10 1.63 6.17 -51.93 -0.32 1.31 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.01 0.14 5.69 -51.93 -0.30 -0.16 16 42 H 0.10 2.28 6.26 -51.93 -0.33 1.96 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 2.37 6.03 -51.93 -0.31 2.05 16 46 H 0.02 0.35 4.07 -51.93 -0.21 0.14 16 47 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -33.01 371.36 -9.07 -42.08 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.69 Total: 4.16 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.12 Total: -3.54 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.00 Total: -52.91 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.84 Total: -11.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.01 -9.07 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588472139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.690 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds