Wall clock time and date at job start Tue Mar 31 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99810 * 2 1 4 4 N 1.46501 * 109.47232 * 124.99485 * 3 2 1 5 5 C 1.36452 * 127.13922 * 269.71996 * 4 3 2 6 6 N 1.38588 * 126.47098 * 359.97438 * 5 4 3 7 7 C 1.48531 * 110.99765 * 62.89541 * 6 5 4 8 8 C 1.54940 * 103.22701 * 159.71900 * 7 6 5 9 9 C 1.54600 * 102.92055 * 322.58817 * 8 7 6 10 10 H 1.09001 * 110.30533 * 263.04213 * 9 8 7 11 11 C 1.50702 * 110.30973 * 140.87129 * 9 8 7 12 12 O 1.20826 * 119.99843 * 244.28352 * 11 9 8 13 13 O 1.34223 * 119.99840 * 64.28290 * 11 9 8 14 14 C 1.47898 * 110.99842 * 180.29269 * 6 5 4 15 15 N 1.31218 * 107.05176 * 180.26216 * 5 4 3 16 16 N 1.28521 * 109.86550 * 359.73513 * 15 5 4 17 17 C 1.30300 * 110.05344 * 359.97438 * 16 15 5 18 18 C 1.50693 * 126.35232 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47289 * 117.17009 * 18 17 16 20 20 C 1.53002 * 109.47026 * 357.17517 * 18 17 16 21 21 C 1.50699 * 109.47490 * 237.17593 * 18 17 16 22 22 H 1.07993 * 119.99787 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00010 * 179.97438 * 21 18 17 24 24 N 1.31524 * 119.99897 * 3.25951 * 23 21 18 25 25 Si 1.86797 * 119.99924 * 183.25224 * 23 21 18 26 26 H 1.48501 * 109.46781 * 84.99390 * 25 23 21 27 27 H 1.48499 * 109.47412 * 324.99430 * 25 23 21 28 28 H 1.48502 * 109.47141 * 204.98943 * 25 23 21 29 29 H 1.08006 * 119.99787 * 179.97438 * 1 2 3 30 30 H 1.07997 * 120.00258 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00159 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47223 * 4.99604 * 3 2 1 33 33 H 1.09001 * 109.46778 * 244.99636 * 3 2 1 34 34 H 1.09000 * 110.67077 * 278.15335 * 7 6 5 35 35 H 1.09002 * 110.67104 * 41.28832 * 7 6 5 36 36 H 1.08993 * 110.72795 * 204.22643 * 8 7 6 37 37 H 1.09008 * 110.87359 * 81.01225 * 8 7 6 38 38 H 0.96696 * 116.99925 * 179.97438 * 13 11 9 39 39 H 1.09003 * 109.91752 * 333.50877 * 14 6 5 40 40 H 1.09001 * 109.91933 * 94.80309 * 14 6 5 41 41 H 1.08998 * 109.47690 * 187.80516 * 19 18 17 42 42 H 1.09006 * 109.47156 * 307.80861 * 19 18 17 43 43 H 1.09000 * 109.46929 * 67.80055 * 19 18 17 44 44 H 1.09007 * 109.46986 * 303.87562 * 20 18 17 45 45 H 1.09006 * 109.47392 * 63.87200 * 20 18 17 46 46 H 1.08998 * 109.47257 * 183.87306 * 20 18 17 47 47 H 0.96994 * 119.99404 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.7466 1.7975 2.3902 6 7 1.5572 2.3413 2.8487 7 6 0.4596 1.3421 2.7950 8 6 -0.5850 1.9092 3.7890 9 6 0.2943 2.4970 4.9165 10 1 0.3836 1.7848 5.7368 11 6 -0.2886 3.7958 5.4111 12 8 0.3245 4.8269 5.2667 13 8 -1.4888 3.8071 6.0119 14 6 1.6697 2.7410 4.2682 15 7 3.8499 1.6388 3.0825 16 7 4.7560 1.1047 2.3439 17 6 4.2884 0.8922 1.1464 18 6 5.0378 0.2824 -0.0100 19 6 4.3637 -1.0284 -0.4203 20 6 6.4826 0.0033 0.4090 21 6 5.0284 1.2384 -1.1749 22 1 4.5292 2.1919 -1.0868 23 6 5.6570 0.8955 -2.3532 24 7 6.2095 -0.2910 -2.4826 25 14 5.7239 2.1161 -3.7656 26 1 6.8819 3.0267 -3.5784 27 1 4.4693 2.9101 -3.7935 28 1 5.8737 1.3819 -5.0477 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 0.0418 1.2830 1.7900 35 1 0.8125 0.3647 3.1241 36 1 -1.2237 1.1138 4.1728 37 1 -1.1836 2.6901 3.3198 38 1 -1.8211 4.6639 6.3126 39 1 2.4272 2.1353 4.7656 40 1 1.9306 3.7970 4.3371 41 1 4.9804 -1.5381 -1.1605 42 1 4.2458 -1.6661 0.4558 43 1 3.3843 -0.8147 -0.8485 44 1 6.9418 0.9251 0.7665 45 1 6.4927 -0.7404 1.2059 46 1 7.0428 -0.3735 -0.4467 47 1 6.6515 -0.5323 -3.3117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588472140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:27 Heat of formation + Delta-G solvation = 8.892486 kcal Electronic energy + Delta-G solvation = -30419.065414 eV Core-core repulsion = 26410.715949 eV Total energy + Delta-G solvation = -4008.349465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.90671 -41.63336 -39.64203 -37.80329 -37.12880 -36.74776 -34.04375 -33.63128 -32.86882 -30.50118 -29.21664 -27.80774 -27.57915 -27.25481 -25.38906 -23.85767 -23.18153 -21.82449 -21.55783 -20.99509 -20.12840 -19.18025 -18.70675 -18.23166 -18.09945 -17.17551 -16.96505 -16.81187 -16.47195 -15.83066 -15.74526 -15.21840 -14.98072 -14.80380 -14.37367 -14.18700 -13.97916 -13.65488 -13.54093 -13.37132 -13.27601 -12.97532 -12.93418 -12.82195 -12.64243 -12.54502 -12.50973 -12.44211 -12.30831 -12.22970 -11.93212 -11.76110 -11.57631 -11.53306 -11.42617 -11.07559 -10.86091 -10.52784 -10.42258 -10.38362 -9.20705 -8.08112 -6.25005 0.92627 1.04594 1.17400 1.42455 1.47179 1.52680 1.66482 1.98102 2.04055 2.43029 2.77285 3.16164 3.18525 3.38412 3.73678 3.81039 3.92797 4.01513 4.12507 4.18367 4.25825 4.31125 4.39616 4.47104 4.64291 4.69097 4.73998 4.76824 4.78324 4.91438 4.97211 4.97775 4.99050 5.01969 5.13510 5.17527 5.35421 5.48731 5.51352 5.56982 5.61716 5.62852 5.66624 5.73776 5.99094 6.06691 6.27014 6.32443 6.73166 6.98701 7.42267 7.93336 8.92163 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.003380 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.754307 B = 8281.761219 C = 8536.787018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.196 4.196 3 C 0.130 3.870 4 N -0.462 5.462 5 C 0.331 3.669 6 N -0.434 5.434 7 C 0.025 3.975 8 C -0.092 4.092 9 C -0.088 4.088 10 H 0.147 0.853 11 C 0.499 3.501 12 O -0.549 6.549 13 O -0.502 6.502 14 C 0.052 3.948 15 N -0.362 5.362 16 N -0.345 5.345 17 C 0.229 3.771 18 C 0.145 3.855 19 C -0.118 4.118 20 C -0.107 4.107 21 C -0.524 4.524 22 H 0.044 0.956 23 C 0.041 3.959 24 N -0.893 5.893 25 Si 0.946 3.054 26 H -0.286 1.286 27 H -0.269 1.269 28 H -0.278 1.278 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.429 0.571 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.014 0.986 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.161 0.638 9.497 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.215 4.215 3 C 0.008 3.992 4 N -0.154 5.154 5 C -0.027 4.027 6 N -0.158 5.158 7 C -0.101 4.101 8 C -0.130 4.130 9 C -0.108 4.108 10 H 0.164 0.836 11 C 0.342 3.658 12 O -0.439 6.439 13 O -0.315 6.315 14 C -0.075 4.075 15 N -0.206 5.206 16 N -0.183 5.183 17 C -0.040 4.040 18 C 0.142 3.858 19 C -0.177 4.177 20 C -0.165 4.165 21 C -0.563 4.563 22 H 0.062 0.938 23 C -0.161 4.161 24 N -0.530 5.530 25 Si 0.772 3.228 26 H -0.212 1.212 27 H -0.194 1.194 28 H -0.203 1.203 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.110 0.890 38 H 0.291 0.709 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.041 0.959 46 H 0.092 0.908 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.923 0.934 10.039 22.329 hybrid contribution 0.153 0.853 -1.195 1.477 sum -19.770 1.787 8.844 21.731 Atomic orbital electron populations 1.24176 0.94084 1.04116 0.95630 1.23151 0.97145 0.97065 1.04130 1.21256 0.91516 0.98213 0.88172 1.46142 1.12040 1.47113 1.10102 1.22845 0.95407 1.00269 0.84172 1.61639 0.99606 1.33611 1.20987 1.23898 0.89830 0.92877 1.03493 1.22525 0.95966 1.02208 0.92289 1.21866 0.94054 0.93421 1.01435 0.83555 1.23113 0.78809 0.90827 0.73073 1.90746 1.61786 1.36437 1.54924 1.84467 1.33922 1.43092 1.70051 1.22830 0.96732 1.03360 0.84581 1.74257 0.98801 1.21305 1.26234 1.73866 1.23765 1.18536 1.02088 1.25810 0.82524 0.98630 0.97060 1.16798 0.90407 0.93086 0.85515 1.21850 1.00551 0.96194 0.99068 1.21480 0.97754 0.98053 0.99246 1.20925 1.36465 1.01905 0.97000 0.93821 1.25370 0.94398 0.96416 0.99870 1.69911 1.36270 1.19834 1.27018 0.85764 0.78432 0.79369 0.79235 1.21235 1.19391 1.20330 0.85446 0.86128 0.87633 0.87469 0.87739 0.86884 0.92774 0.85314 0.89008 0.70865 0.90941 0.89436 0.90591 0.96740 0.92890 0.96381 0.95871 0.90839 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 12.24 67.78 0.83 -1.56 16 2 C -0.20 -5.06 8.27 25.65 0.21 -4.85 16 3 C 0.13 4.17 5.02 85.63 0.43 4.60 16 4 N -0.46 -18.31 2.79 -518.90 -1.45 -19.76 16 5 C 0.33 12.79 7.03 260.11 1.83 14.62 16 6 N -0.43 -12.72 5.32 -693.49 -3.69 -16.41 16 7 C 0.02 0.50 5.60 86.65 0.49 0.98 16 8 C -0.09 -1.15 6.60 31.80 0.21 -0.94 16 9 C -0.09 -1.46 3.49 -10.66 -0.04 -1.50 16 10 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 11 C 0.50 8.90 7.49 71.24 0.53 9.44 16 12 O -0.55 -14.67 15.99 21.97 0.35 -14.32 16 13 O -0.50 -5.22 13.42 -51.35 -0.69 -5.91 16 14 C 0.05 1.41 6.08 86.45 0.53 1.94 16 15 N -0.36 -16.48 10.70 -58.00 -0.62 -17.10 16 16 N -0.35 -17.30 11.50 -49.53 -0.57 -17.87 16 17 C 0.23 10.81 6.27 137.63 0.86 11.68 16 18 C 0.14 7.05 0.54 -53.68 -0.03 7.02 16 19 C -0.12 -5.30 7.56 71.98 0.54 -4.75 16 20 C -0.11 -5.42 7.80 71.98 0.56 -4.86 16 21 C -0.52 -26.80 6.36 25.60 0.16 -26.64 16 22 H 0.04 2.29 7.14 -2.91 -0.02 2.27 16 23 C 0.04 2.07 5.13 84.65 0.43 2.50 16 24 N -0.89 -45.96 9.45 21.45 0.20 -45.76 16 25 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 26 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.12 1.54 7.12 -2.91 -0.02 1.52 16 31 H 0.11 3.14 6.07 -2.91 -0.02 3.12 16 32 H 0.11 2.93 7.59 -2.39 -0.02 2.91 16 33 H 0.10 3.93 5.74 -2.39 -0.01 3.91 16 34 H 0.11 1.97 3.89 -2.39 -0.01 1.96 16 35 H 0.05 1.18 7.99 -2.39 -0.02 1.16 16 36 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.07 7.86 -2.38 -0.02 1.05 16 38 H 0.43 1.18 9.10 -74.06 -0.67 0.51 16 39 H 0.07 2.21 6.85 -2.39 -0.02 2.19 16 40 H 0.09 2.78 6.42 -2.39 -0.02 2.76 16 41 H 0.08 3.68 6.21 -2.39 -0.01 3.67 16 42 H 0.01 0.59 8.13 -2.38 -0.02 0.57 16 43 H 0.05 2.18 4.73 -2.39 -0.01 2.17 16 44 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.07 3.87 6.10 -2.39 -0.01 3.85 16 47 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 Total: -1.00 -71.62 365.38 3.46 -68.15 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.35 Total: 18.41 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 7.56 Total: 7.67 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -6.13 Total: -116.90 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.34 Total: -20.22 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -71.62 3.46 -68.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588472140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.047 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds