Wall clock time and date at job start Tue Mar 31 2020 18:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00024 * 2 1 4 4 C 1.50703 * 120.00171 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46637 * 94.92621 * 4 2 1 6 6 C 1.36742 * 127.13729 * 266.08668 * 5 4 2 7 7 C 1.50703 * 126.34431 * 0.02562 * 6 5 4 8 8 C 1.53008 * 109.47052 * 89.99746 * 7 6 5 9 9 C 1.50703 * 109.47052 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99760 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99887 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00334 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99736 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47524 * 89.99654 * 13 11 9 15 15 H 1.48501 * 109.46904 * 209.99688 * 13 11 9 16 16 H 1.48505 * 109.47365 * 329.99189 * 13 11 9 17 17 N 1.30293 * 107.30670 * 179.97438 * 6 5 4 18 18 N 1.28520 * 110.05439 * 0.02562 * 17 6 5 19 19 C 1.31216 * 109.85957 * 359.74081 * 18 17 6 20 20 N 1.38591 * 126.47214 * 180.25767 * 19 18 17 21 21 C 1.48535 * 110.99863 * 251.52007 * 20 19 18 22 22 C 1.54934 * 103.22513 * 159.72152 * 21 20 19 23 23 C 1.54603 * 102.92316 * 322.58885 * 22 21 20 24 24 H 1.09002 * 110.30687 * 263.04325 * 23 22 21 25 25 C 1.50702 * 110.31077 * 140.87241 * 23 22 21 26 26 O 1.20823 * 119.99889 * 244.28672 * 25 23 22 27 27 O 1.34224 * 119.99955 * 64.28065 * 25 23 22 28 28 C 1.47898 * 110.99754 * 8.91856 * 20 19 18 29 29 H 1.07997 * 119.99831 * 185.38809 * 1 2 3 30 30 H 1.08000 * 119.99877 * 5.39268 * 1 2 3 31 31 H 1.08996 * 109.47465 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46518 * 300.00046 * 3 2 1 33 33 H 1.09003 * 109.47309 * 59.99543 * 3 2 1 34 34 H 1.08998 * 109.46851 * 214.92150 * 4 2 1 35 35 H 1.08992 * 109.46943 * 334.92864 * 4 2 1 36 36 H 1.08999 * 109.47161 * 209.99614 * 7 6 5 37 37 H 1.09000 * 109.47333 * 330.00124 * 7 6 5 38 38 H 1.08999 * 109.47030 * 299.99948 * 8 7 6 39 39 H 1.09000 * 109.46743 * 60.00017 * 8 7 6 40 40 H 0.96998 * 120.00547 * 180.02562 * 12 11 9 41 41 H 1.08998 * 110.66510 * 278.15526 * 21 20 19 42 42 H 1.08996 * 110.66681 * 41.28765 * 21 20 19 43 43 H 1.08993 * 110.72447 * 204.23008 * 22 21 20 44 44 H 1.09005 * 110.87674 * 81.01692 * 22 21 20 45 45 H 0.96694 * 117.00440 * 180.02562 * 27 25 23 46 46 H 1.09001 * 109.92009 * 333.50959 * 28 20 19 47 47 H 1.09000 * 109.91360 * 94.80440 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4104 -1.6692 -1.3754 6 6 1.7007 -2.4780 -2.2192 7 6 0.3993 -3.1712 -1.9076 8 6 -0.7684 -2.2592 -2.2894 9 6 -2.0698 -2.9526 -1.9784 10 1 -2.0645 -3.9446 -1.5516 11 6 -3.2671 -2.3208 -2.2398 12 7 -3.2736 -1.1130 -2.7600 13 14 -4.8802 -3.1801 -1.8536 14 1 -5.2955 -2.8530 -0.4659 15 1 -5.9251 -2.7216 -2.8040 16 1 -4.7024 -4.6487 -1.9841 17 7 2.3576 -2.5374 -3.3429 18 7 3.4260 -1.8272 -3.2669 19 6 3.5059 -1.2675 -2.0827 20 7 4.5141 -0.4290 -1.6342 21 6 5.3654 -1.1118 -0.6266 22 6 6.6728 -0.2807 -0.6455 23 6 6.8342 0.0761 -2.1411 24 1 7.5153 -0.6236 -2.6255 25 6 7.3395 1.4880 -2.2906 26 8 6.6481 2.3238 -2.8227 27 8 8.5575 1.8169 -1.8325 28 6 5.4212 -0.0523 -2.7399 29 1 -0.5400 -0.9312 0.0878 30 1 -0.5400 0.9312 -0.0879 31 1 3.1352 1.1060 0.0005 32 1 1.8001 1.8767 -0.8901 33 1 1.8002 1.8768 0.8900 34 1 2.9749 -1.1981 0.5888 35 1 1.4391 -2.0849 0.4364 36 1 0.3366 -4.0990 -2.4762 37 1 0.3526 -3.3943 -0.8418 38 1 -0.7057 -1.3313 -1.7208 39 1 -0.7217 -2.0360 -3.3553 40 1 -4.1159 -0.6684 -2.9435 41 1 4.9003 -1.0749 0.3585 42 1 5.5605 -2.1425 -0.9228 43 1 7.5153 -0.8789 -0.2986 44 1 6.5683 0.6216 -0.0429 45 1 8.8379 2.7347 -1.9507 46 1 5.4121 -0.8259 -3.5077 47 1 5.1107 0.9016 -3.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588597535.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:04 Heat of formation + Delta-G solvation = 13.323078 kcal Electronic energy + Delta-G solvation = -29702.342344 eV Core-core repulsion = 25694.185004 eV Total energy + Delta-G solvation = -4008.157340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.65163 -40.88931 -38.77005 -36.64139 -36.44205 -34.19581 -33.24769 -32.77962 -31.33166 -29.68332 -28.16347 -27.29664 -26.60179 -25.22720 -24.57463 -22.53028 -21.93184 -21.10372 -20.39858 -19.68006 -18.61538 -18.45815 -17.43376 -17.34943 -16.50930 -16.15708 -15.79823 -15.63046 -15.07750 -14.58383 -14.50601 -14.12012 -13.92389 -13.59752 -13.39969 -13.29250 -13.06018 -12.86908 -12.67349 -12.32259 -12.27404 -12.00868 -11.84591 -11.78031 -11.66794 -11.33097 -11.28429 -11.19375 -10.99677 -10.93931 -10.77138 -10.69733 -10.37216 -9.98409 -9.80511 -9.69907 -9.29557 -9.20942 -8.82160 -8.36419 -8.00667 -6.04310 -4.08247 1.85948 1.98784 2.22950 2.59291 2.86988 3.27496 3.28658 3.36443 3.39254 3.77174 3.95891 4.08888 4.41418 4.55848 4.65899 4.81677 4.90186 4.91501 4.96777 5.00592 5.09700 5.31652 5.32606 5.35573 5.39758 5.48073 5.52404 5.58555 5.75566 5.79501 5.84923 5.87193 6.10769 6.21437 6.23598 6.30258 6.36678 6.45649 6.49662 6.68860 6.86370 6.92404 7.02977 7.43025 7.54178 7.61644 7.72288 7.94093 8.30808 8.97791 9.20403 9.55887 11.06247 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.002808 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.519259 B = 9970.100667 C =10307.078324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.182 4.182 3 C -0.108 4.108 4 C 0.154 3.846 5 N -0.466 5.466 6 C 0.216 3.784 7 C -0.032 4.032 8 C 0.022 3.978 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.889 5.889 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 N -0.296 5.296 18 N -0.323 5.323 19 C 0.327 3.673 20 N -0.428 5.428 21 C 0.034 3.966 22 C -0.105 4.105 23 C -0.093 4.093 24 H 0.121 0.879 25 C 0.488 3.512 26 O -0.503 6.503 27 O -0.516 6.516 28 C 0.051 3.949 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.411 0.589 46 H 0.092 0.908 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.453 3.868 9.645 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.182 4.182 3 C -0.164 4.164 4 C 0.032 3.968 5 N -0.160 5.160 6 C -0.051 4.051 7 C -0.072 4.072 8 C -0.016 4.016 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.527 5.527 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 N -0.134 5.134 18 N -0.167 5.167 19 C -0.030 4.030 20 N -0.152 5.152 21 C -0.093 4.093 22 C -0.143 4.143 23 C -0.113 4.113 24 H 0.138 0.862 25 C 0.329 3.671 26 O -0.390 6.390 27 O -0.328 6.328 28 C -0.076 4.076 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.270 0.730 46 H 0.110 0.890 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 22.138 3.900 8.287 23.958 hybrid contribution -0.860 0.148 0.983 1.315 sum 21.278 4.048 9.270 23.560 Atomic orbital electron populations 1.24108 0.94909 1.03560 0.93792 1.21609 0.95448 0.94728 1.06457 1.20715 1.00250 0.94182 1.01290 1.20752 1.00566 0.96209 0.79267 1.46280 1.17856 1.37908 1.13942 1.25589 0.97720 0.95255 0.86575 1.20450 0.86350 0.99342 1.01037 1.19278 0.89751 0.94567 0.97986 1.21121 0.90566 1.02128 1.42370 0.92476 1.24976 0.99136 0.94887 0.95066 1.69968 1.26543 1.13013 1.43223 0.86613 0.83498 0.79957 0.78048 1.20703 1.21234 1.19816 1.73995 1.02127 1.18358 1.18937 1.74383 1.15576 1.11186 1.15574 1.22369 0.91201 0.98768 0.90670 1.61568 1.08634 1.32902 1.12101 1.23446 0.92268 0.96940 0.96674 1.22449 0.97546 1.01142 0.93152 1.21873 0.98534 0.91175 0.99726 0.86154 1.23120 0.78595 0.91346 0.74011 1.90753 1.56745 1.51366 1.40089 1.84514 1.34737 1.37322 1.76247 1.22948 0.86967 1.05157 0.92514 0.86554 0.87968 0.91433 0.92163 0.92288 0.89245 0.88225 0.89440 0.91455 0.94963 0.95912 0.92914 0.88894 0.91985 0.88877 0.89678 0.73026 0.89010 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 12.09 29.01 0.35 -1.71 16 2 C -0.18 -2.64 5.64 -101.06 -0.57 -3.21 16 3 C -0.11 -1.41 10.05 36.01 0.36 -1.05 16 4 C 0.15 2.07 6.11 -5.19 -0.03 2.04 16 5 N -0.47 -7.79 2.79 -115.37 -0.32 -8.11 16 6 C 0.22 4.29 7.32 -154.01 -1.13 3.16 16 7 C -0.03 -0.64 5.52 -27.88 -0.15 -0.80 16 8 C 0.02 0.55 4.95 -27.88 -0.14 0.41 16 9 C -0.52 -13.97 9.11 -34.44 -0.31 -14.28 16 10 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 N -0.30 -6.44 12.18 32.99 0.40 -6.04 16 18 N -0.32 -6.38 10.67 30.32 0.32 -6.06 16 19 C 0.33 5.43 6.93 -318.87 -2.21 3.22 16 20 N -0.43 -5.46 4.81 -170.55 -0.82 -6.28 16 21 C 0.03 0.30 6.19 -1.90 -0.01 0.29 16 22 C -0.10 -0.69 6.60 -24.87 -0.16 -0.85 16 23 C -0.09 -0.76 3.49 -90.41 -0.32 -1.07 16 24 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 25 C 0.49 4.40 7.49 36.01 0.27 4.67 16 26 O -0.50 -6.43 15.99 -18.75 -0.30 -6.73 16 27 O -0.52 -3.16 13.42 -39.24 -0.53 -3.68 16 28 C 0.05 0.62 6.14 -2.75 -0.02 0.60 16 29 H 0.12 2.08 6.89 -52.49 -0.36 1.72 16 30 H 0.10 1.67 8.05 -52.49 -0.42 1.24 16 31 H 0.07 0.83 7.50 -51.93 -0.39 0.44 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.94 6.23 -51.93 -0.32 0.62 16 35 H 0.10 1.26 6.97 -51.93 -0.36 0.90 16 36 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.07 1.20 7.20 -51.93 -0.37 0.82 16 38 H 0.03 0.81 4.75 -51.93 -0.25 0.56 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.09 0.72 6.57 -51.93 -0.34 0.38 16 42 H 0.06 0.58 7.99 -51.93 -0.42 0.17 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 45 H 0.41 0.95 9.10 45.56 0.41 1.37 16 46 H 0.09 1.22 6.75 -51.93 -0.35 0.86 16 47 H 0.11 1.57 6.42 -51.93 -0.33 1.23 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -34.81 384.27 -9.90 -44.71 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.99 Total: 2.64 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -4.17 Total: -6.99 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.32 Total: -51.68 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.83 Total: -10.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.81 -9.90 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588597535.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.032 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds