Wall clock time and date at job start Tue Mar 31 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50706 * 120.00024 * 2 1 4 4 C 1.50703 * 120.00171 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46637 * 94.92621 * 4 2 1 6 6 C 1.36742 * 127.13729 * 266.08668 * 5 4 2 7 7 C 1.50703 * 126.34431 * 0.02562 * 6 5 4 8 8 C 1.53008 * 109.47052 * 89.99746 * 7 6 5 9 9 C 1.50703 * 109.47052 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99760 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99887 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00334 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99736 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47524 * 89.99654 * 13 11 9 15 15 H 1.48501 * 109.46904 * 209.99688 * 13 11 9 16 16 H 1.48505 * 109.47365 * 329.99189 * 13 11 9 17 17 N 1.30293 * 107.30670 * 179.97438 * 6 5 4 18 18 N 1.28520 * 110.05439 * 0.02562 * 17 6 5 19 19 C 1.31216 * 109.85957 * 359.74081 * 18 17 6 20 20 N 1.38591 * 126.47214 * 180.25767 * 19 18 17 21 21 C 1.48535 * 110.99863 * 251.52007 * 20 19 18 22 22 C 1.54934 * 103.22513 * 159.72152 * 21 20 19 23 23 C 1.54603 * 102.92316 * 322.58885 * 22 21 20 24 24 H 1.09002 * 110.30687 * 263.04325 * 23 22 21 25 25 C 1.50702 * 110.31077 * 140.87241 * 23 22 21 26 26 O 1.20823 * 119.99889 * 244.28672 * 25 23 22 27 27 O 1.34224 * 119.99955 * 64.28065 * 25 23 22 28 28 C 1.47898 * 110.99754 * 8.91856 * 20 19 18 29 29 H 1.07997 * 119.99831 * 185.38809 * 1 2 3 30 30 H 1.08000 * 119.99877 * 5.39268 * 1 2 3 31 31 H 1.08996 * 109.47465 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46518 * 300.00046 * 3 2 1 33 33 H 1.09003 * 109.47309 * 59.99543 * 3 2 1 34 34 H 1.08998 * 109.46851 * 214.92150 * 4 2 1 35 35 H 1.08992 * 109.46943 * 334.92864 * 4 2 1 36 36 H 1.08999 * 109.47161 * 209.99614 * 7 6 5 37 37 H 1.09000 * 109.47333 * 330.00124 * 7 6 5 38 38 H 1.08999 * 109.47030 * 299.99948 * 8 7 6 39 39 H 1.09000 * 109.46743 * 60.00017 * 8 7 6 40 40 H 0.96998 * 120.00547 * 180.02562 * 12 11 9 41 41 H 1.08998 * 110.66510 * 278.15526 * 21 20 19 42 42 H 1.08996 * 110.66681 * 41.28765 * 21 20 19 43 43 H 1.08993 * 110.72447 * 204.23008 * 22 21 20 44 44 H 1.09005 * 110.87674 * 81.01692 * 22 21 20 45 45 H 0.96694 * 117.00440 * 180.02562 * 27 25 23 46 46 H 1.09001 * 109.92009 * 333.50959 * 28 20 19 47 47 H 1.09000 * 109.91360 * 94.80440 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4104 -1.6692 -1.3754 6 6 1.7007 -2.4780 -2.2192 7 6 0.3993 -3.1712 -1.9076 8 6 -0.7684 -2.2592 -2.2894 9 6 -2.0698 -2.9526 -1.9784 10 1 -2.0645 -3.9446 -1.5516 11 6 -3.2671 -2.3208 -2.2398 12 7 -3.2736 -1.1130 -2.7600 13 14 -4.8802 -3.1801 -1.8536 14 1 -5.2955 -2.8530 -0.4659 15 1 -5.9251 -2.7216 -2.8040 16 1 -4.7024 -4.6487 -1.9841 17 7 2.3576 -2.5374 -3.3429 18 7 3.4260 -1.8272 -3.2669 19 6 3.5059 -1.2675 -2.0827 20 7 4.5141 -0.4290 -1.6342 21 6 5.3654 -1.1118 -0.6266 22 6 6.6728 -0.2807 -0.6455 23 6 6.8342 0.0761 -2.1411 24 1 7.5153 -0.6236 -2.6255 25 6 7.3395 1.4880 -2.2906 26 8 6.6481 2.3238 -2.8227 27 8 8.5575 1.8169 -1.8325 28 6 5.4212 -0.0523 -2.7399 29 1 -0.5400 -0.9312 0.0878 30 1 -0.5400 0.9312 -0.0879 31 1 3.1352 1.1060 0.0005 32 1 1.8001 1.8767 -0.8901 33 1 1.8002 1.8768 0.8900 34 1 2.9749 -1.1981 0.5888 35 1 1.4391 -2.0849 0.4364 36 1 0.3366 -4.0990 -2.4762 37 1 0.3526 -3.3943 -0.8418 38 1 -0.7057 -1.3313 -1.7208 39 1 -0.7217 -2.0360 -3.3553 40 1 -4.1159 -0.6684 -2.9435 41 1 4.9003 -1.0749 0.3585 42 1 5.5605 -2.1425 -0.9228 43 1 7.5153 -0.8789 -0.2986 44 1 6.5683 0.6216 -0.0429 45 1 8.8379 2.7347 -1.9507 46 1 5.4121 -0.8259 -3.5077 47 1 5.1107 0.9016 -3.1663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588597535.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:03 Heat of formation + Delta-G solvation = -7.753300 kcal Electronic energy + Delta-G solvation = -29703.256284 eV Core-core repulsion = 25694.185004 eV Total energy + Delta-G solvation = -4009.071280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.04395 -41.62757 -39.62793 -37.90406 -37.10173 -35.99677 -34.50830 -34.20625 -32.89004 -30.52049 -29.66462 -28.43416 -27.85555 -27.05438 -25.46055 -23.79897 -23.28198 -22.10304 -21.70253 -20.81123 -19.81913 -19.14748 -18.64514 -18.32483 -18.10499 -17.33881 -17.12503 -16.55446 -16.44264 -15.99188 -15.72979 -15.26894 -15.00033 -14.85635 -14.81983 -14.29049 -14.17245 -14.10410 -13.92661 -13.59159 -13.34529 -13.06077 -12.93423 -12.85851 -12.75976 -12.72160 -12.56516 -12.50484 -12.42360 -12.29035 -11.95421 -11.89210 -11.81213 -11.53394 -11.41833 -11.25702 -11.04746 -10.59701 -10.53858 -10.05395 -9.35249 -8.15840 -6.26951 0.64016 0.95400 1.18735 1.42943 1.44988 1.55097 1.58312 1.80300 2.04355 2.43660 2.70584 3.18608 3.18792 3.37962 3.52612 3.60929 3.73898 3.95503 4.04988 4.09863 4.12778 4.19372 4.27051 4.36656 4.43172 4.62682 4.66755 4.69314 4.74387 4.76142 4.82556 4.90873 4.91965 4.95618 5.00252 5.03749 5.05212 5.12900 5.43867 5.51311 5.52303 5.61313 5.63485 5.67918 5.80540 5.85817 6.15536 6.22245 6.88672 6.99231 7.41973 7.75022 8.95486 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021878 B = 0.002808 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.519259 B = 9970.100667 C =10307.078324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.165 4.165 3 C -0.104 4.104 4 C 0.146 3.854 5 N -0.462 5.462 6 C 0.201 3.799 7 C -0.017 4.017 8 C 0.030 3.970 9 C -0.534 4.534 10 H 0.069 0.931 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.290 1.290 16 H -0.263 1.263 17 N -0.334 5.334 18 N -0.359 5.359 19 C 0.349 3.651 20 N -0.431 5.431 21 C 0.030 3.970 22 C -0.091 4.091 23 C -0.087 4.087 24 H 0.147 0.853 25 C 0.496 3.504 26 O -0.549 6.549 27 O -0.503 6.503 28 C 0.049 3.951 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.028 0.972 39 H -0.029 1.029 40 H 0.261 0.739 41 H 0.113 0.887 42 H 0.062 0.938 43 H 0.128 0.872 44 H 0.091 0.909 45 H 0.429 0.571 46 H 0.075 0.925 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.733 3.197 12.618 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C -0.160 4.160 4 C 0.025 3.975 5 N -0.156 5.156 6 C -0.068 4.068 7 C -0.057 4.057 8 C -0.008 4.008 9 C -0.572 4.572 10 H 0.087 0.913 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.187 1.187 17 N -0.172 5.172 18 N -0.203 5.203 19 C -0.009 4.009 20 N -0.156 5.156 21 C -0.096 4.096 22 C -0.129 4.129 23 C -0.107 4.107 24 H 0.164 0.836 25 C 0.340 3.660 26 O -0.439 6.439 27 O -0.317 6.317 28 C -0.078 4.078 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.046 0.954 39 H -0.010 1.010 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.109 0.891 45 H 0.291 0.709 46 H 0.093 0.907 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 24.469 3.223 11.295 27.142 hybrid contribution -1.413 0.475 0.065 1.492 sum 23.056 3.698 11.360 25.967 Atomic orbital electron populations 1.23950 0.95774 1.02447 0.96673 1.21861 0.94944 0.96123 1.03704 1.20730 1.00719 0.93264 1.01329 1.21124 1.02592 0.95742 0.78001 1.46335 1.17296 1.37242 1.14685 1.25328 0.97888 0.96517 0.87035 1.20163 0.84959 0.97979 1.02605 1.19088 0.91570 0.95529 0.94597 1.21541 0.91356 1.02570 1.41708 0.91279 1.25881 1.03028 0.95471 0.94896 1.70121 1.27373 1.14790 1.44736 0.85509 0.78677 0.79143 0.78088 1.19416 1.21639 1.18678 1.73890 1.03273 1.19752 1.20272 1.74310 1.15613 1.12756 1.17611 1.22785 0.91535 0.96923 0.89631 1.61715 1.08892 1.32113 1.12858 1.23675 0.92806 0.97128 0.95998 1.22500 0.97266 1.01474 0.91633 1.21854 0.96276 0.91437 1.01083 0.83583 1.23194 0.78790 0.91124 0.72922 1.90755 1.58187 1.52690 1.42313 1.84465 1.32999 1.38966 1.75250 1.22844 0.89398 1.03085 0.92460 0.88358 0.88723 0.90116 0.94340 0.89984 0.85266 0.87106 0.89764 0.88568 0.95390 1.01031 0.93027 0.86874 0.91915 0.85393 0.89056 0.70930 0.90660 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 12.09 67.78 0.82 -4.20 16 2 C -0.17 -4.65 5.64 -16.49 -0.09 -4.75 16 3 C -0.10 -2.55 10.05 71.24 0.72 -1.84 16 4 C 0.15 3.60 6.11 85.63 0.52 4.12 16 5 N -0.46 -15.09 2.79 -518.91 -1.45 -16.54 16 6 C 0.20 8.12 7.32 137.64 1.01 9.13 16 7 C -0.02 -0.71 5.52 29.85 0.16 -0.55 16 8 C 0.03 1.56 4.95 29.85 0.15 1.71 16 9 C -0.53 -28.91 9.11 25.60 0.23 -28.68 16 10 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 11 C 0.01 0.30 5.46 84.66 0.46 0.77 16 12 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 13 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 N -0.33 -15.04 12.18 -49.53 -0.60 -15.64 16 18 N -0.36 -14.54 10.67 -58.00 -0.62 -15.16 16 19 C 0.35 11.42 6.93 260.11 1.80 13.22 16 20 N -0.43 -10.29 4.81 -693.50 -3.34 -13.62 16 21 C 0.03 0.42 6.19 86.65 0.54 0.96 16 22 C -0.09 -0.78 6.60 31.80 0.21 -0.57 16 23 C -0.09 -1.18 3.49 -10.66 -0.04 -1.21 16 24 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 25 C 0.50 7.89 7.49 71.24 0.53 8.43 16 26 O -0.55 -13.79 15.99 21.97 0.35 -13.43 16 27 O -0.50 -4.51 13.42 -51.35 -0.69 -5.20 16 28 C 0.05 1.16 6.14 86.45 0.53 1.69 16 29 H 0.10 3.63 6.89 -2.91 -0.02 3.61 16 30 H 0.09 3.23 8.05 -2.91 -0.02 3.21 16 31 H 0.08 1.76 7.50 -2.39 -0.02 1.74 16 32 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 2.16 6.23 -2.39 -0.01 2.14 16 35 H 0.11 2.53 6.97 -2.39 -0.02 2.51 16 36 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.10 3.32 7.20 -2.39 -0.02 3.30 16 38 H 0.03 1.46 4.75 -2.39 -0.01 1.45 16 39 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 40 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.11 1.17 6.57 -2.39 -0.02 1.15 16 42 H 0.06 0.94 7.99 -2.39 -0.02 0.93 16 43 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.09 0.75 7.86 -2.38 -0.02 0.73 16 45 H 0.43 0.75 9.10 -74.06 -0.67 0.07 16 46 H 0.08 2.03 6.75 -2.39 -0.02 2.01 16 47 H 0.08 2.46 6.42 -2.39 -0.02 2.45 16 Total: -1.00 -80.59 384.27 3.85 -76.74 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.33 Total: 15.13 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 7.56 Total: -1.77 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -5.72 Total: -116.74 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.34 Total: -18.64 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -80.59 3.85 -76.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588597535.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.989 kcal (2) G-P(sol) polarization free energy of solvation -80.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds