Wall clock time and date at job start Tue Mar 31 2020 18:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.53005 * 109.47283 * 120.00069 * 2 1 3 5 5 H 1.08995 * 115.55839 * 325.69029 * 4 2 1 6 6 C 1.52997 * 117.49847 * 111.37869 * 4 2 1 7 7 C 1.52994 * 60.00007 * 107.48579 * 6 4 2 8 8 H 1.09002 * 117.50073 * 252.48035 * 7 6 4 9 9 C 1.50702 * 117.49733 * 107.48612 * 7 6 4 10 10 O 1.21283 * 120.00262 * 291.39436 * 9 7 6 11 11 N 1.34777 * 119.99928 * 111.11341 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 C 1.50694 * 109.47550 * 180.02562 * 12 11 9 14 14 N 1.31790 * 119.09617 * 269.73832 * 13 12 11 15 15 C 1.32798 * 120.71785 * 179.71806 * 14 13 12 16 16 O 1.35524 * 120.51275 * 180.24707 * 15 14 13 17 17 C 1.39420 * 118.97551 * 0.53927 * 15 14 13 18 18 C 1.38190 * 118.34860 * 359.73314 * 17 15 14 19 19 C 1.50698 * 120.41171 * 179.97438 * 18 17 15 20 20 N 1.46501 * 109.47601 * 95.01812 * 19 18 17 21 21 C 1.36928 * 120.00186 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00459 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99929 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00127 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99691 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47112 * 89.99993 * 25 23 21 27 27 H 1.48500 * 109.46908 * 210.00046 * 25 23 21 28 28 H 1.48503 * 109.47368 * 329.99946 * 25 23 21 29 29 N 1.31764 * 119.09229 * 89.99713 * 13 12 11 30 30 H 1.09004 * 109.47091 * 300.00135 * 1 2 3 31 31 H 1.08995 * 109.47225 * 60.00060 * 1 2 3 32 32 H 1.08996 * 109.47276 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47204 * 240.00369 * 2 1 3 34 34 H 1.09003 * 109.47338 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47471 * 299.99631 * 3 2 1 36 36 H 1.08995 * 109.47487 * 60.00070 * 3 2 1 37 37 H 1.09007 * 117.49875 * 0.02562 * 6 4 2 38 38 H 1.09000 * 117.51661 * 214.97101 * 6 4 2 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 40 40 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 41 41 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 42 42 H 0.96698 * 113.99622 * 270.29092 * 16 15 14 43 43 H 1.07999 * 120.82365 * 179.76050 * 17 15 14 44 44 H 1.08994 * 109.47147 * 215.02465 * 19 18 17 45 45 H 1.09007 * 109.47026 * 335.01765 * 19 18 17 46 46 H 0.97001 * 119.99564 * 359.97438 * 20 19 18 47 47 H 0.96995 * 119.99747 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4311 -0.5983 2.1448 6 6 2.7420 -2.0663 1.0513 7 6 3.5550 -0.8281 1.4342 8 1 4.1887 -0.3848 0.6660 9 6 4.0911 -0.7552 2.8407 10 8 3.3288 -0.6171 3.7739 11 7 5.4172 -0.8493 3.0622 12 6 5.9379 -0.7845 4.4300 13 6 7.4392 -0.9124 4.4026 14 7 7.9820 -2.1103 4.4869 15 6 9.3011 -2.2607 4.4604 16 8 9.8548 -3.4950 4.5423 17 6 10.1080 -1.1288 4.3531 18 6 9.4963 0.1078 4.2730 19 6 10.3236 1.3620 4.1564 20 7 10.4574 1.7294 2.7445 21 6 11.1726 2.8424 2.3915 22 1 11.6377 3.4497 3.1539 23 6 11.2989 3.1908 1.0537 24 7 10.7316 2.4511 0.1246 25 14 12.2739 4.7097 0.5722 26 1 13.6945 4.3368 0.3524 27 1 11.7132 5.2820 -0.6780 28 1 12.1893 5.7176 1.6595 29 7 8.1732 0.1771 4.3004 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.8408 -2.4371 0.0311 38 1 2.5951 -2.8284 1.8167 39 1 6.0270 -0.9597 2.3159 40 1 5.6630 0.1701 4.8786 41 1 5.5143 -1.5980 5.0189 42 1 10.0370 -3.7851 5.4465 43 1 11.1842 -1.2162 4.3327 44 1 9.8344 2.1716 4.6978 45 1 11.3120 1.1861 4.5813 46 1 10.0399 1.1837 2.0598 47 1 10.8196 2.6948 -0.8101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656646629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:49 Heat of formation + Delta-G solvation = -0.882645 kcal Electronic energy + Delta-G solvation = -27787.106767 eV Core-core repulsion = 23778.333421 eV Total energy + Delta-G solvation = -4008.773346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28161 -40.11846 -37.95350 -37.62017 -35.65486 -34.59951 -33.50900 -33.14152 -31.82130 -30.66064 -27.99052 -27.33329 -26.59441 -24.42466 -23.51605 -23.08256 -22.66419 -21.49389 -20.46774 -19.86582 -18.90165 -17.88757 -17.47057 -17.21440 -16.52784 -15.79078 -15.42663 -15.35242 -14.97141 -14.82304 -14.71352 -14.35937 -14.16263 -13.72176 -13.38722 -13.29879 -13.11600 -13.01903 -12.68127 -12.63182 -12.60973 -12.36251 -12.16088 -11.91649 -11.51525 -11.33108 -11.08688 -10.88603 -10.87254 -10.67554 -10.45832 -10.42054 -10.25476 -10.17632 -10.00835 -9.83787 -9.40966 -9.24448 -9.18868 -9.01279 -7.08800 -5.86435 -3.17935 0.73366 0.97090 2.42766 2.94162 3.17767 3.38639 3.43819 3.45786 3.63506 3.77216 3.82835 4.29133 4.37374 4.54695 4.54977 4.59687 4.81430 4.87485 4.97584 5.07749 5.09804 5.14297 5.27048 5.33109 5.37736 5.45173 5.48630 5.51499 5.56866 5.68370 5.69298 5.70549 5.77173 5.88363 5.93370 5.95284 6.13631 6.15454 6.21029 6.26243 6.32227 6.43674 6.98811 7.25119 7.38228 7.59585 8.07061 8.12915 8.29083 9.41506 9.91965 10.27539 11.35863 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.003011 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.235893 B = 9296.574946 C =12169.650499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.149 4.149 4 C -0.110 4.110 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.189 4.189 8 H 0.126 0.874 9 C 0.550 3.450 10 O -0.543 6.543 11 N -0.716 5.716 12 C 0.197 3.803 13 C 0.315 3.685 14 N -0.532 5.532 15 C 0.354 3.646 16 O -0.474 6.474 17 C -0.217 4.217 18 C 0.200 3.800 19 C 0.196 3.804 20 N -0.722 5.722 21 C -0.245 4.245 22 H 0.075 0.925 23 C -0.009 4.009 24 N -0.930 5.930 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 N -0.491 5.491 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.406 0.594 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.405 0.595 43 H 0.156 0.844 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.385 0.615 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 -10.967 5.207 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.206 4.206 4 C -0.128 4.128 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.210 4.210 8 H 0.144 0.856 9 C 0.337 3.663 10 O -0.420 6.420 11 N -0.368 5.368 12 C 0.072 3.928 13 C 0.046 3.954 14 N -0.258 5.258 15 C 0.166 3.834 16 O -0.281 6.281 17 C -0.241 4.241 18 C 0.055 3.945 19 C 0.069 3.931 20 N -0.367 5.367 21 C -0.376 4.376 22 H 0.093 0.907 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 N -0.207 5.207 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.240 0.760 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.263 0.737 43 H 0.174 0.826 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.219 0.781 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.918 -10.655 5.340 19.094 hybrid contribution 1.997 0.279 -0.491 2.076 sum -12.921 -10.376 4.849 17.266 Atomic orbital electron populations 1.21797 0.94636 1.01785 1.01896 1.20757 0.95934 0.96208 0.95699 1.21841 1.01495 0.95401 1.01857 1.22476 0.91717 0.98283 1.00355 0.86424 1.23098 1.01604 0.90867 1.02983 1.22251 0.96521 1.06539 0.95708 0.85602 1.19600 0.81429 0.75319 0.89925 1.90686 1.57111 1.49531 1.44698 1.45745 1.07628 1.74642 1.08744 1.19841 0.83862 1.04308 0.84785 1.22733 0.96946 0.82743 0.92953 1.67674 1.13414 1.28068 1.16689 1.19380 0.86974 0.85134 0.91887 1.84756 1.80222 1.29841 1.33321 1.22979 1.03563 0.92615 1.04985 1.22208 0.89448 0.95895 0.86985 1.19714 0.94331 0.89006 0.90098 1.42158 1.63755 1.31394 0.99384 1.19194 1.24955 1.01751 0.91667 0.90740 1.24779 1.00887 0.99250 0.95662 1.69667 1.48240 1.39881 0.99965 0.86128 0.79447 0.82364 0.77837 1.21587 1.21661 1.20581 1.68196 1.07045 1.32552 1.12927 0.92463 0.92579 0.92583 0.90990 0.92341 0.92614 0.92388 0.87766 0.88271 0.75991 0.88422 0.88852 0.73671 0.82582 0.93406 0.93817 0.78115 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 2 C -0.07 -0.57 3.07 -90.62 -0.28 -0.85 16 3 C -0.15 -1.37 9.03 37.16 0.34 -1.03 16 4 C -0.11 -1.07 4.66 -90.62 -0.42 -1.50 16 5 H 0.12 1.32 7.64 -51.93 -0.40 0.92 16 6 C -0.15 -1.33 9.88 -26.74 -0.26 -1.59 16 7 C -0.19 -2.04 5.39 -91.78 -0.49 -2.53 16 8 H 0.13 1.26 7.61 -51.93 -0.40 0.86 16 9 C 0.55 7.46 7.61 -10.98 -0.08 7.38 16 10 O -0.54 -8.88 16.26 5.55 0.09 -8.79 16 11 N -0.72 -9.46 5.55 -61.47 -0.34 -9.80 16 12 C 0.20 2.68 6.10 -5.20 -0.03 2.65 16 13 C 0.32 4.81 7.01 -157.23 -1.10 3.70 16 14 N -0.53 -7.94 10.36 -10.78 -0.11 -8.05 16 15 C 0.35 4.96 7.83 -16.69 -0.13 4.83 16 16 O -0.47 -5.38 13.58 -18.26 -0.25 -5.63 16 17 C -0.22 -3.19 9.79 -39.16 -0.38 -3.58 16 18 C 0.20 3.43 6.18 -82.31 -0.51 2.92 16 19 C 0.20 3.80 6.61 -5.19 -0.03 3.76 16 20 N -0.72 -17.83 5.59 -61.09 -0.34 -18.17 16 21 C -0.25 -6.64 9.99 -15.06 -0.15 -6.79 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 25 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 N -0.49 -8.47 10.27 -7.06 -0.07 -8.54 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.56 7.90 -51.93 -0.41 0.15 16 34 H 0.06 0.58 7.29 -51.93 -0.38 0.20 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.76 8.05 -51.93 -0.42 0.35 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.41 5.19 8.46 -40.82 -0.35 4.85 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.40 2.26 9.06 45.56 0.41 2.67 16 43 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.04 0.78 8.06 -51.92 -0.42 0.36 16 46 H 0.39 10.27 7.66 -40.82 -0.31 9.96 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -33.63 402.59 -9.00 -42.62 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.44 Total: 14.02 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -3.30 Total: 6.30 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -0.14 Total: -71.44 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.16 Total: -14.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.63 -9.00 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656646629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.742 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds