Wall clock time and date at job start Tue Mar 31 2020 18:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47086 * 2 1 4 4 C 1.53005 * 109.47283 * 120.00069 * 2 1 3 5 5 H 1.08995 * 115.55839 * 325.69029 * 4 2 1 6 6 C 1.52997 * 117.49847 * 111.37869 * 4 2 1 7 7 C 1.52994 * 60.00007 * 107.48579 * 6 4 2 8 8 H 1.09002 * 117.50073 * 252.48035 * 7 6 4 9 9 C 1.50702 * 117.49733 * 107.48612 * 7 6 4 10 10 O 1.21283 * 120.00262 * 291.39436 * 9 7 6 11 11 N 1.34777 * 119.99928 * 111.11341 * 9 7 6 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 7 13 13 C 1.50694 * 109.47550 * 180.02562 * 12 11 9 14 14 N 1.31790 * 119.09617 * 269.73832 * 13 12 11 15 15 C 1.32798 * 120.71785 * 179.71806 * 14 13 12 16 16 O 1.35524 * 120.51275 * 180.24707 * 15 14 13 17 17 C 1.39420 * 118.97551 * 0.53927 * 15 14 13 18 18 C 1.38190 * 118.34860 * 359.73314 * 17 15 14 19 19 C 1.50698 * 120.41171 * 179.97438 * 18 17 15 20 20 N 1.46501 * 109.47601 * 95.01812 * 19 18 17 21 21 C 1.36928 * 120.00186 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00459 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99929 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00127 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99691 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47112 * 89.99993 * 25 23 21 27 27 H 1.48500 * 109.46908 * 210.00046 * 25 23 21 28 28 H 1.48503 * 109.47368 * 329.99946 * 25 23 21 29 29 N 1.31764 * 119.09229 * 89.99713 * 13 12 11 30 30 H 1.09004 * 109.47091 * 300.00135 * 1 2 3 31 31 H 1.08995 * 109.47225 * 60.00060 * 1 2 3 32 32 H 1.08996 * 109.47276 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47204 * 240.00369 * 2 1 3 34 34 H 1.09003 * 109.47338 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47471 * 299.99631 * 3 2 1 36 36 H 1.08995 * 109.47487 * 60.00070 * 3 2 1 37 37 H 1.09007 * 117.49875 * 0.02562 * 6 4 2 38 38 H 1.09000 * 117.51661 * 214.97101 * 6 4 2 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 7 40 40 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 41 41 H 1.09002 * 109.46857 * 59.99862 * 12 11 9 42 42 H 0.96698 * 113.99622 * 270.29092 * 16 15 14 43 43 H 1.07999 * 120.82365 * 179.76050 * 17 15 14 44 44 H 1.08994 * 109.47147 * 215.02465 * 19 18 17 45 45 H 1.09007 * 109.47026 * 335.01765 * 19 18 17 46 46 H 0.97001 * 119.99564 * 359.97438 * 20 19 18 47 47 H 0.96995 * 119.99747 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4311 -0.5983 2.1448 6 6 2.7420 -2.0663 1.0513 7 6 3.5550 -0.8281 1.4342 8 1 4.1887 -0.3848 0.6660 9 6 4.0911 -0.7552 2.8407 10 8 3.3288 -0.6171 3.7739 11 7 5.4172 -0.8493 3.0622 12 6 5.9379 -0.7845 4.4300 13 6 7.4392 -0.9124 4.4026 14 7 7.9820 -2.1103 4.4869 15 6 9.3011 -2.2607 4.4604 16 8 9.8548 -3.4950 4.5423 17 6 10.1080 -1.1288 4.3531 18 6 9.4963 0.1078 4.2730 19 6 10.3236 1.3620 4.1564 20 7 10.4574 1.7294 2.7445 21 6 11.1726 2.8424 2.3915 22 1 11.6377 3.4497 3.1539 23 6 11.2989 3.1908 1.0537 24 7 10.7316 2.4511 0.1246 25 14 12.2739 4.7097 0.5722 26 1 13.6945 4.3368 0.3524 27 1 11.7132 5.2820 -0.6780 28 1 12.1893 5.7176 1.6595 29 7 8.1732 0.1771 4.3004 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 2.8408 -2.4371 0.0311 38 1 2.5951 -2.8284 1.8167 39 1 6.0270 -0.9597 2.3159 40 1 5.6630 0.1701 4.8786 41 1 5.5143 -1.5980 5.0189 42 1 10.0370 -3.7851 5.4465 43 1 11.1842 -1.2162 4.3327 44 1 9.8344 2.1716 4.6978 45 1 11.3120 1.1861 4.5813 46 1 10.0399 1.1837 2.0598 47 1 10.8196 2.6948 -0.8101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656646629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:48 Heat of formation + Delta-G solvation = -27.318939 kcal Electronic energy + Delta-G solvation = -27788.253131 eV Core-core repulsion = 23778.333421 eV Total energy + Delta-G solvation = -4009.919710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.46888 -41.13337 -38.91422 -38.54767 -37.15244 -35.94126 -34.65482 -34.23760 -33.15807 -32.35249 -29.13353 -28.23188 -28.00541 -25.39631 -25.25550 -23.96655 -23.74696 -22.86032 -21.45100 -20.65632 -19.98926 -19.43415 -18.80843 -18.45627 -17.64986 -16.95785 -16.61615 -16.42447 -16.41494 -15.84516 -15.81613 -15.67382 -15.37885 -15.00273 -14.95571 -14.39729 -14.12203 -14.04910 -13.99962 -13.64537 -13.57187 -13.40192 -13.16601 -13.00672 -12.97477 -12.76524 -12.18128 -12.13345 -12.06199 -11.98747 -11.81532 -11.56890 -11.53862 -11.29926 -11.11731 -11.01736 -10.95645 -10.59200 -10.45679 -10.30221 -9.08960 -7.97261 -5.28607 -0.43279 -0.23385 1.39641 1.49549 1.51075 1.59511 1.87328 2.12542 2.51228 2.62236 2.66894 2.82746 3.09740 3.37826 3.53857 3.73806 3.76191 3.81241 3.87533 4.07441 4.09590 4.11643 4.14569 4.23926 4.38467 4.41930 4.45225 4.53535 4.66408 4.77495 4.83945 4.84449 4.87795 4.92852 5.01826 5.07547 5.09820 5.15181 5.23649 5.27612 5.43284 5.48555 5.53599 5.79496 6.21423 6.31333 6.48673 6.86698 7.05467 7.29110 7.95592 8.21103 9.25995 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.007730 B = 0.003011 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.235893 B = 9296.574946 C =12169.650499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.150 4.150 4 C -0.109 4.109 5 H 0.100 0.900 6 C -0.130 4.130 7 C -0.202 4.202 8 H 0.134 0.866 9 C 0.548 3.452 10 O -0.576 6.576 11 N -0.713 5.713 12 C 0.201 3.799 13 C 0.317 3.683 14 N -0.536 5.536 15 C 0.365 3.635 16 O -0.474 6.474 17 C -0.211 4.211 18 C 0.183 3.817 19 C 0.198 3.802 20 N -0.735 5.735 21 C -0.246 4.246 22 H 0.085 0.915 23 C -0.072 4.072 24 N -0.968 5.968 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.298 1.298 28 H -0.268 1.268 29 N -0.516 5.516 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.128 0.872 38 H 0.096 0.904 39 H 0.408 0.592 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.431 0.569 43 H 0.175 0.825 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.372 0.628 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -11.931 5.186 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.207 4.207 4 C -0.128 4.128 5 H 0.118 0.882 6 C -0.167 4.167 7 C -0.223 4.223 8 H 0.152 0.848 9 C 0.337 3.663 10 O -0.456 6.456 11 N -0.364 5.364 12 C 0.075 3.925 13 C 0.048 3.952 14 N -0.262 5.262 15 C 0.177 3.823 16 O -0.285 6.285 17 C -0.235 4.235 18 C 0.038 3.962 19 C 0.071 3.929 20 N -0.378 5.378 21 C -0.377 4.377 22 H 0.103 0.897 23 C -0.265 4.265 24 N -0.618 5.618 25 Si 0.806 3.194 26 H -0.211 1.211 27 H -0.225 1.225 28 H -0.193 1.193 29 N -0.233 5.233 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.146 0.854 38 H 0.115 0.885 39 H 0.243 0.757 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.295 0.705 43 H 0.193 0.807 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.203 0.797 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.500 -11.633 5.388 19.355 hybrid contribution 1.878 0.470 -0.359 1.969 sum -12.622 -11.163 5.029 17.584 Atomic orbital electron populations 1.21784 0.93737 1.02351 1.02059 1.20764 0.96644 0.95424 0.95352 1.21853 1.00793 0.96203 1.01865 1.22477 0.90649 0.99313 1.00386 0.88163 1.23206 0.99355 0.90037 1.04113 1.22268 0.97231 1.08676 0.94088 0.84808 1.20088 0.81119 0.74352 0.90782 1.90664 1.57772 1.51175 1.45981 1.45770 1.07724 1.74292 1.08663 1.19813 0.83184 1.04303 0.85171 1.22839 0.97231 0.82510 0.92596 1.67759 1.13997 1.27668 1.16783 1.19440 0.86589 0.85891 0.90413 1.84716 1.79753 1.28208 1.35786 1.23083 1.04537 0.91822 1.04069 1.21914 0.89470 0.95936 0.88833 1.19767 0.95817 0.90087 0.87211 1.42310 1.63381 1.30759 1.01363 1.19633 1.24017 1.02080 0.91974 0.89724 1.25607 1.02632 1.02346 0.95877 1.69825 1.50324 1.41783 0.99898 0.85095 0.77937 0.79180 0.77235 1.21112 1.22451 1.19267 1.68119 1.07463 1.33747 1.13966 0.93137 0.91601 0.91825 0.89702 0.93419 0.91529 0.93465 0.85401 0.88503 0.75722 0.89084 0.87995 0.70512 0.80708 0.93932 0.91528 0.79693 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.18 71.98 0.66 -1.25 16 2 C -0.06 -1.00 3.07 -10.79 -0.03 -1.03 16 3 C -0.15 -2.71 9.03 71.98 0.65 -2.06 16 4 C -0.11 -2.09 4.66 -10.79 -0.05 -2.14 16 5 H 0.10 2.29 7.64 -2.39 -0.02 2.27 16 6 C -0.13 -2.14 9.88 30.59 0.30 -1.84 16 7 C -0.20 -4.27 5.39 -11.54 -0.06 -4.33 16 8 H 0.13 2.61 7.61 -2.39 -0.02 2.59 16 9 C 0.55 15.05 7.61 87.66 0.67 15.72 16 10 O -0.58 -19.33 16.26 -3.04 -0.05 -19.38 16 11 N -0.71 -19.02 5.55 -466.79 -2.59 -21.61 16 12 C 0.20 5.49 6.10 85.63 0.52 6.02 16 13 C 0.32 9.55 7.01 138.76 0.97 10.53 16 14 N -0.54 -15.26 10.36 -300.68 -3.12 -18.38 16 15 C 0.36 9.49 7.83 84.83 0.66 10.15 16 16 O -0.47 -9.36 13.58 -88.27 -1.20 -10.55 16 17 C -0.21 -5.85 9.79 22.54 0.22 -5.63 16 18 C 0.18 6.16 6.18 42.44 0.26 6.42 16 19 C 0.20 7.54 6.61 85.63 0.57 8.11 16 20 N -0.73 -36.37 5.59 -347.18 -1.94 -38.31 16 21 C -0.25 -13.24 9.99 84.04 0.84 -12.40 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 24 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 25 Si 0.98 44.97 29.55 68.60 2.03 46.99 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 N -0.52 -17.81 10.27 -176.24 -1.81 -19.62 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 1.14 7.90 -2.39 -0.02 1.12 16 34 H 0.05 0.95 7.29 -2.39 -0.02 0.93 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.13 1.52 8.05 -2.38 -0.02 1.50 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.41 10.50 8.46 -92.71 -0.78 9.71 16 40 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.43 3.35 9.06 -74.06 -0.67 2.68 16 43 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.26 8.06 -2.38 -0.02 2.24 16 46 H 0.37 20.13 7.66 -92.71 -0.71 19.42 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -72.16 402.59 -2.89 -75.05 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: -1.15 Total: 41.10 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.65 Total: 22.70 kcal Atomic # 7 Polarization: -146.74 SS G_CDS: -9.17 Total: -155.91 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.25 Total: -29.93 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -72.16 -2.89 -75.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656646629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.735 kcal (2) G-P(sol) polarization free energy of solvation -72.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds