Wall clock time and date at job start Tue Mar 31 2020 18:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 C 1.53007 * 109.46937 * 119.99846 * 2 1 3 5 5 H 1.08994 * 115.56367 * 31.21939 * 4 2 1 6 6 C 1.53080 * 117.51412 * 245.51120 * 4 2 1 7 7 C 1.52999 * 59.98579 * 252.52665 * 6 4 2 8 8 H 1.08997 * 117.49749 * 252.50333 * 7 6 4 9 9 C 1.50700 * 117.50077 * 107.49871 * 7 6 4 10 10 O 1.21279 * 120.00547 * 261.13352 * 9 7 6 11 11 N 1.34781 * 119.99792 * 81.13206 * 9 7 6 12 12 C 1.46500 * 120.00240 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47239 * 180.02562 * 12 11 9 14 14 N 1.31795 * 119.09574 * 89.99965 * 13 12 11 15 15 C 1.32785 * 120.71714 * 179.97438 * 14 13 12 16 16 O 1.35520 * 120.51176 * 179.97438 * 15 14 13 17 17 C 1.39420 * 118.97951 * 0.02562 * 15 14 13 18 18 C 1.38193 * 118.34835 * 359.97438 * 17 15 14 19 19 C 1.50695 * 120.41116 * 180.02562 * 18 17 15 20 20 N 1.46495 * 109.47249 * 94.98025 * 19 18 17 21 21 C 1.36940 * 120.00413 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99444 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00368 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99983 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47151 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47299 * 119.99871 * 25 23 21 28 28 H 1.48496 * 109.47199 * 239.99884 * 25 23 21 29 29 N 1.31759 * 119.08856 * 269.98083 * 13 12 11 30 30 H 1.08996 * 109.46941 * 174.07174 * 1 2 3 31 31 H 1.09000 * 109.47192 * 294.07083 * 1 2 3 32 32 H 1.09001 * 109.47154 * 54.06989 * 1 2 3 33 33 H 1.08997 * 109.47458 * 239.99921 * 2 1 3 34 34 H 1.09001 * 109.47396 * 185.71593 * 3 2 1 35 35 H 1.08993 * 109.46724 * 305.71899 * 3 2 1 36 36 H 1.08997 * 109.47124 * 65.71816 * 3 2 1 37 37 H 1.08992 * 117.49222 * 145.03515 * 6 4 2 38 38 H 1.09002 * 117.52979 * 359.97438 * 6 4 2 39 39 H 0.97000 * 119.99900 * 0.02562 * 11 9 7 40 40 H 1.09001 * 109.46418 * 60.00016 * 12 11 9 41 41 H 1.09003 * 109.47218 * 300.00514 * 12 11 9 42 42 H 0.96697 * 113.99783 * 90.00314 * 16 15 14 43 43 H 1.07995 * 120.82757 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47052 * 214.97829 * 19 18 17 45 45 H 1.09000 * 109.47313 * 334.97840 * 19 18 17 46 46 H 0.97005 * 120.00301 * 359.97438 * 20 19 18 47 47 H 0.96995 * 120.00092 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4039 -1.5244 1.6213 6 6 2.8062 0.1092 2.2820 7 6 3.5532 -0.8918 1.3983 8 1 3.9125 -1.8075 1.8679 9 6 4.4271 -0.3366 0.3033 10 8 4.0139 -0.2868 -0.8358 11 7 5.6680 0.1045 0.5900 12 6 6.5178 0.6438 -0.4745 13 6 7.8440 1.0632 0.1053 14 7 8.8281 0.1877 0.1535 15 6 10.0100 0.5229 0.6573 16 8 11.0188 -0.3808 0.7053 17 6 10.1969 1.8185 1.1372 18 6 9.1378 2.7034 1.0669 19 6 9.2888 4.1153 1.5716 20 7 9.6422 4.9973 0.4565 21 6 9.8328 6.3355 0.6758 22 1 9.7220 6.7408 1.6707 23 6 10.1682 7.1711 -0.3807 24 7 10.3036 6.6771 -1.5931 25 14 10.4274 8.9967 -0.0816 26 1 10.2169 9.2974 1.3573 27 1 11.8116 9.3701 -0.4685 28 1 9.4591 9.7741 -0.8960 29 7 7.9879 2.2951 0.5499 30 1 -0.3633 -1.0221 -0.1061 31 1 -0.3633 0.4191 0.9383 32 1 -0.3633 0.6030 -0.8321 33 1 1.8934 -0.5138 -0.8899 34 1 3.1252 1.4443 -0.1024 35 1 1.5955 1.9850 -0.8343 36 1 1.7627 1.9259 0.9367 37 1 2.6739 -0.1480 3.3329 38 1 2.9476 1.1693 2.0715 39 1 5.9986 0.0643 1.5010 40 1 6.0295 1.5068 -0.9271 41 1 6.6793 -0.1218 -1.2335 42 1 11.5802 -0.3857 -0.0820 43 1 11.1458 2.1230 1.5535 44 1 8.3483 4.4461 2.0124 45 1 10.0753 4.1497 2.3254 46 1 9.7421 4.6333 -0.4370 47 1 10.5377 7.2611 -2.3314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656646631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:57 Heat of formation + Delta-G solvation = 10.833487 kcal Electronic energy + Delta-G solvation = -28154.615668 eV Core-core repulsion = 24146.350371 eV Total energy + Delta-G solvation = -4008.265297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.29464 -40.51799 -37.92655 -37.51226 -35.64675 -34.65162 -33.33871 -33.10061 -31.79546 -30.65575 -27.93194 -27.30749 -26.59451 -24.36234 -23.72215 -23.51161 -22.68459 -21.51801 -20.43534 -19.42103 -18.83415 -17.85219 -17.32716 -17.28874 -16.49637 -16.01877 -15.70339 -15.35794 -15.18751 -14.93393 -14.62291 -14.38328 -14.13464 -13.82274 -13.43466 -13.28313 -13.08242 -12.95422 -12.74476 -12.68333 -12.49539 -12.14764 -11.92613 -11.84259 -11.45770 -11.09820 -11.07840 -10.97921 -10.90182 -10.68264 -10.58345 -10.41745 -10.23213 -10.13974 -9.87757 -9.72451 -9.39238 -9.22636 -9.21216 -9.01995 -7.08990 -5.86761 -3.18396 0.73428 0.97324 2.44883 2.88005 3.16352 3.38363 3.43835 3.45658 3.46429 3.75976 3.85616 4.30013 4.32396 4.52238 4.54155 4.59044 4.79867 4.87672 4.95654 5.09011 5.09642 5.19570 5.27763 5.32574 5.42290 5.45897 5.49090 5.57643 5.59507 5.65043 5.72305 5.82153 5.84035 5.89066 5.92881 6.07529 6.14403 6.17115 6.31871 6.33059 6.41164 6.42576 6.98934 7.25660 7.30745 7.59886 8.07276 8.07544 8.28827 9.41255 9.91719 10.27160 11.35620 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.002672 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.789263 B =10475.480679 C =12446.236401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.153 4.153 4 C -0.109 4.109 5 H 0.111 0.889 6 C -0.164 4.164 7 C -0.190 4.190 8 H 0.128 0.872 9 C 0.549 3.451 10 O -0.527 6.527 11 N -0.717 5.717 12 C 0.196 3.804 13 C 0.316 3.684 14 N -0.533 5.533 15 C 0.354 3.646 16 O -0.478 6.478 17 C -0.217 4.217 18 C 0.200 3.800 19 C 0.196 3.804 20 N -0.722 5.722 21 C -0.245 4.245 22 H 0.075 0.925 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 N -0.491 5.491 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.402 0.598 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.408 0.592 43 H 0.156 0.844 44 H 0.048 0.952 45 H 0.044 0.956 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 -17.837 7.329 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.210 4.210 4 C -0.128 4.128 5 H 0.129 0.871 6 C -0.201 4.201 7 C -0.211 4.211 8 H 0.146 0.854 9 C 0.336 3.664 10 O -0.403 6.403 11 N -0.370 5.370 12 C 0.071 3.929 13 C 0.047 3.953 14 N -0.259 5.259 15 C 0.167 3.833 16 O -0.285 6.285 17 C -0.242 4.242 18 C 0.055 3.945 19 C 0.069 3.931 20 N -0.367 5.367 21 C -0.375 4.375 22 H 0.093 0.907 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.742 3.258 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 N -0.207 5.207 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.236 0.764 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.267 0.733 43 H 0.174 0.826 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.628 -18.043 6.752 23.034 hybrid contribution 1.741 1.014 0.195 2.024 sum -10.887 -17.029 6.948 21.372 Atomic orbital electron populations 1.21837 0.95406 1.01336 1.01597 1.20737 0.94707 0.96226 0.97124 1.22096 1.02234 0.95590 1.01033 1.22478 0.90876 1.01393 0.98054 0.87134 1.23332 1.02234 0.98015 0.96551 1.22218 0.95084 1.02700 1.01104 0.85436 1.19583 0.80822 0.76923 0.89112 1.90697 1.72614 1.55101 1.21884 1.45833 1.15004 1.64172 1.11948 1.19875 0.83389 1.00315 0.89357 1.22714 0.94177 0.85166 0.93247 1.67673 1.01352 1.38500 1.18367 1.19369 0.86848 0.86060 0.91069 1.84690 1.40270 1.58796 1.44754 1.22975 1.02968 0.93116 1.05100 1.22198 0.86592 0.97375 0.88324 1.19715 0.99393 0.81979 0.92046 1.42177 1.84234 1.04754 1.05568 1.19240 1.40282 0.83481 0.94504 0.90688 1.24785 1.02118 0.98387 0.95341 1.69679 1.54267 1.34622 0.99200 0.86057 0.77402 0.84908 0.77411 1.20390 1.21764 1.21705 1.68195 1.25720 1.16448 1.10373 0.92971 0.92936 0.92648 0.88668 0.91845 0.92825 0.93065 0.88051 0.87316 0.76415 0.88238 0.88726 0.73291 0.82606 0.93440 0.93803 0.78101 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.16 37.16 0.34 -0.83 16 2 C -0.07 -0.69 2.44 -90.62 -0.22 -0.91 16 3 C -0.15 -1.67 7.45 37.16 0.28 -1.40 16 4 C -0.11 -0.92 5.72 -90.57 -0.52 -1.44 16 5 H 0.11 0.76 8.09 -51.93 -0.42 0.34 16 6 C -0.16 -1.28 9.29 -26.69 -0.25 -1.53 16 7 C -0.19 -1.67 6.17 -91.77 -0.57 -2.23 16 8 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.55 6.40 5.77 -10.98 -0.06 6.34 16 10 O -0.53 -7.64 12.76 5.56 0.07 -7.56 16 11 N -0.72 -8.12 5.55 -61.47 -0.34 -8.47 16 12 C 0.20 2.58 6.10 -5.20 -0.03 2.55 16 13 C 0.32 4.75 7.01 -157.23 -1.10 3.65 16 14 N -0.53 -7.89 10.36 -10.78 -0.11 -8.00 16 15 C 0.35 4.94 7.83 -16.70 -0.13 4.81 16 16 O -0.48 -5.40 13.58 -18.25 -0.25 -5.65 16 17 C -0.22 -3.18 9.79 -39.16 -0.38 -3.57 16 18 C 0.20 3.41 6.18 -82.31 -0.51 2.90 16 19 C 0.20 3.78 6.61 -5.20 -0.03 3.75 16 20 N -0.72 -17.76 5.59 -61.09 -0.34 -18.10 16 21 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 22 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -27.67 13.06 55.49 0.72 -26.94 16 25 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 N -0.49 -8.36 10.27 -7.06 -0.07 -8.44 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.15 6.57 -51.93 -0.34 0.81 16 34 H 0.06 0.81 4.88 -51.93 -0.25 0.56 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.50 6.72 -51.93 -0.35 0.15 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.11 0.96 5.80 -51.93 -0.30 0.66 16 39 H 0.40 4.04 8.46 -40.82 -0.35 3.70 16 40 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.41 2.65 9.06 45.56 0.41 3.07 16 43 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 46 H 0.39 10.23 7.66 -40.82 -0.31 9.92 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -32.96 389.84 -9.01 -41.97 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -6.10 Total: 13.52 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -3.44 Total: 4.96 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -0.14 Total: -69.94 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.18 Total: -13.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.96 -9.01 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656646631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.801 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds