Wall clock time and date at job start Tue Mar 31 2020 18:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 C 1.53007 * 109.46937 * 119.99846 * 2 1 3 5 5 H 1.08994 * 115.56367 * 31.21939 * 4 2 1 6 6 C 1.53080 * 117.51412 * 245.51120 * 4 2 1 7 7 C 1.52999 * 59.98579 * 252.52665 * 6 4 2 8 8 H 1.08997 * 117.49749 * 252.50333 * 7 6 4 9 9 C 1.50700 * 117.50077 * 107.49871 * 7 6 4 10 10 O 1.21279 * 120.00547 * 261.13352 * 9 7 6 11 11 N 1.34781 * 119.99792 * 81.13206 * 9 7 6 12 12 C 1.46500 * 120.00240 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47239 * 180.02562 * 12 11 9 14 14 N 1.31795 * 119.09574 * 89.99965 * 13 12 11 15 15 C 1.32785 * 120.71714 * 179.97438 * 14 13 12 16 16 O 1.35520 * 120.51176 * 179.97438 * 15 14 13 17 17 C 1.39420 * 118.97951 * 0.02562 * 15 14 13 18 18 C 1.38193 * 118.34835 * 359.97438 * 17 15 14 19 19 C 1.50695 * 120.41116 * 180.02562 * 18 17 15 20 20 N 1.46495 * 109.47249 * 94.98025 * 19 18 17 21 21 C 1.36940 * 120.00413 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99444 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00368 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99983 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47151 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47299 * 119.99871 * 25 23 21 28 28 H 1.48496 * 109.47199 * 239.99884 * 25 23 21 29 29 N 1.31759 * 119.08856 * 269.98083 * 13 12 11 30 30 H 1.08996 * 109.46941 * 174.07174 * 1 2 3 31 31 H 1.09000 * 109.47192 * 294.07083 * 1 2 3 32 32 H 1.09001 * 109.47154 * 54.06989 * 1 2 3 33 33 H 1.08997 * 109.47458 * 239.99921 * 2 1 3 34 34 H 1.09001 * 109.47396 * 185.71593 * 3 2 1 35 35 H 1.08993 * 109.46724 * 305.71899 * 3 2 1 36 36 H 1.08997 * 109.47124 * 65.71816 * 3 2 1 37 37 H 1.08992 * 117.49222 * 145.03515 * 6 4 2 38 38 H 1.09002 * 117.52979 * 359.97438 * 6 4 2 39 39 H 0.97000 * 119.99900 * 0.02562 * 11 9 7 40 40 H 1.09001 * 109.46418 * 60.00016 * 12 11 9 41 41 H 1.09003 * 109.47218 * 300.00514 * 12 11 9 42 42 H 0.96697 * 113.99783 * 90.00314 * 16 15 14 43 43 H 1.07995 * 120.82757 * 179.97438 * 17 15 14 44 44 H 1.09001 * 109.47052 * 214.97829 * 19 18 17 45 45 H 1.09000 * 109.47313 * 334.97840 * 19 18 17 46 46 H 0.97005 * 120.00301 * 359.97438 * 20 19 18 47 47 H 0.96995 * 120.00092 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.4039 -1.5244 1.6213 6 6 2.8062 0.1092 2.2820 7 6 3.5532 -0.8918 1.3983 8 1 3.9125 -1.8075 1.8679 9 6 4.4271 -0.3366 0.3033 10 8 4.0139 -0.2868 -0.8358 11 7 5.6680 0.1045 0.5900 12 6 6.5178 0.6438 -0.4745 13 6 7.8440 1.0632 0.1053 14 7 8.8281 0.1877 0.1535 15 6 10.0100 0.5229 0.6573 16 8 11.0188 -0.3808 0.7053 17 6 10.1969 1.8185 1.1372 18 6 9.1378 2.7034 1.0669 19 6 9.2888 4.1153 1.5716 20 7 9.6422 4.9973 0.4565 21 6 9.8328 6.3355 0.6758 22 1 9.7220 6.7408 1.6707 23 6 10.1682 7.1711 -0.3807 24 7 10.3036 6.6771 -1.5931 25 14 10.4274 8.9967 -0.0816 26 1 10.2169 9.2974 1.3573 27 1 11.8116 9.3701 -0.4685 28 1 9.4591 9.7741 -0.8960 29 7 7.9879 2.2951 0.5499 30 1 -0.3633 -1.0221 -0.1061 31 1 -0.3633 0.4191 0.9383 32 1 -0.3633 0.6030 -0.8321 33 1 1.8934 -0.5138 -0.8899 34 1 3.1252 1.4443 -0.1024 35 1 1.5955 1.9850 -0.8343 36 1 1.7627 1.9259 0.9367 37 1 2.6739 -0.1480 3.3329 38 1 2.9476 1.1693 2.0715 39 1 5.9986 0.0643 1.5010 40 1 6.0295 1.5068 -0.9271 41 1 6.6793 -0.1218 -1.2335 42 1 11.5802 -0.3857 -0.0820 43 1 11.1458 2.1230 1.5535 44 1 8.3483 4.4461 2.0124 45 1 10.0753 4.1497 2.3254 46 1 9.7421 4.6333 -0.4370 47 1 10.5377 7.2611 -2.3314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656646631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:56 Heat of formation + Delta-G solvation = -15.435092 kcal Electronic energy + Delta-G solvation = -28155.754759 eV Core-core repulsion = 24146.350371 eV Total energy + Delta-G solvation = -4009.404388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.46766 -41.39173 -38.89496 -38.39633 -37.12356 -35.90016 -34.67084 -34.02384 -33.12584 -32.32127 -29.03622 -28.23026 -28.09640 -25.27421 -25.24284 -24.38612 -23.88906 -22.87032 -21.32793 -20.21389 -19.88339 -19.44089 -18.81072 -18.18101 -17.54909 -16.90109 -16.85629 -16.69369 -16.41173 -16.02722 -15.76101 -15.45555 -15.43739 -15.17083 -14.90604 -14.44710 -14.22600 -14.12500 -13.87571 -13.65093 -13.51009 -13.21047 -13.15719 -12.96991 -12.80873 -12.58312 -12.21903 -12.08490 -11.97763 -11.87934 -11.81509 -11.72088 -11.53388 -11.29965 -11.03905 -10.97452 -10.75260 -10.46930 -10.40102 -10.21046 -9.09549 -7.98080 -5.29481 -0.42409 -0.23269 1.49037 1.50244 1.55608 1.60177 1.91704 2.08675 2.50938 2.62496 2.70310 2.81414 3.10957 3.37411 3.58493 3.74754 3.83699 3.87585 3.91293 4.05446 4.08660 4.12812 4.21476 4.26944 4.34347 4.43140 4.49638 4.55635 4.78446 4.79658 4.80440 4.87947 4.88810 4.97186 5.06023 5.09427 5.10201 5.18426 5.25273 5.35298 5.47947 5.48457 5.61239 5.80029 6.20894 6.41153 6.44304 6.87305 7.16945 7.28465 7.95233 8.20339 9.25520 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.002672 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.789263 B =10475.480679 C =12446.236401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.150 4.150 4 C -0.112 4.112 5 H 0.134 0.866 6 C -0.152 4.152 7 C -0.194 4.194 8 H 0.152 0.848 9 C 0.545 3.455 10 O -0.560 6.560 11 N -0.710 5.710 12 C 0.202 3.798 13 C 0.318 3.682 14 N -0.537 5.537 15 C 0.364 3.636 16 O -0.474 6.474 17 C -0.212 4.212 18 C 0.184 3.816 19 C 0.198 3.802 20 N -0.735 5.735 21 C -0.243 4.243 22 H 0.086 0.914 23 C -0.074 4.074 24 N -0.970 5.970 25 Si 0.977 3.023 26 H -0.261 1.261 27 H -0.292 1.292 28 H -0.297 1.297 29 N -0.515 5.515 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.410 0.590 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.430 0.570 43 H 0.175 0.825 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.372 0.628 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.468 -18.980 9.605 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.207 4.207 4 C -0.130 4.130 5 H 0.152 0.848 6 C -0.189 4.189 7 C -0.215 4.215 8 H 0.170 0.830 9 C 0.334 3.666 10 O -0.439 6.439 11 N -0.363 5.363 12 C 0.077 3.923 13 C 0.049 3.951 14 N -0.263 5.263 15 C 0.176 3.824 16 O -0.285 6.285 17 C -0.235 4.235 18 C 0.039 3.961 19 C 0.072 3.928 20 N -0.378 5.378 21 C -0.374 4.374 22 H 0.104 0.896 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.806 3.194 26 H -0.185 1.185 27 H -0.219 1.219 28 H -0.224 1.224 29 N -0.232 5.232 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.245 0.755 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.294 0.706 43 H 0.193 0.807 44 H 0.061 0.939 45 H 0.084 0.916 46 H 0.203 0.797 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.731 -19.206 9.085 24.769 hybrid contribution 1.800 1.259 -0.495 2.251 sum -10.931 -17.948 8.590 22.702 Atomic orbital electron populations 1.21793 0.93877 1.02081 1.01948 1.20666 0.95975 0.95142 0.97073 1.22067 1.00665 0.96748 1.01223 1.22571 0.90842 1.02084 0.97538 0.84844 1.23379 1.00836 0.96992 0.97672 1.22281 0.94770 1.03850 1.00598 0.83036 1.20176 0.80783 0.76194 0.89483 1.90689 1.73172 1.56449 1.23570 1.45781 1.14869 1.63810 1.11848 1.19711 0.82974 0.99774 0.89879 1.22842 0.94723 0.84641 0.92868 1.67758 1.01684 1.38361 1.18502 1.19434 0.87092 0.86102 0.89766 1.84657 1.39803 1.57717 1.46293 1.23079 1.02846 0.93026 1.04596 1.21906 0.87610 0.96812 0.89748 1.19768 0.99553 0.82623 0.90876 1.42336 1.84345 1.04844 1.06323 1.19680 1.38245 0.84706 0.94782 0.89617 1.25621 1.03085 1.02676 0.95258 1.69837 1.56359 1.35857 1.00024 0.85020 0.76678 0.79752 0.77953 1.18515 1.21935 1.22429 1.68121 1.26318 1.17512 1.11285 0.91847 0.91889 0.93170 0.91323 0.94080 0.93720 0.91923 0.85410 0.88730 0.75515 0.89804 0.88598 0.70614 0.80739 0.93865 0.91584 0.79699 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.16 71.98 0.66 -1.46 16 2 C -0.07 -1.37 2.44 -10.79 -0.03 -1.40 16 3 C -0.15 -3.38 7.45 71.98 0.54 -2.85 16 4 C -0.11 -1.68 5.72 -10.76 -0.06 -1.74 16 5 H 0.13 1.42 8.09 -2.39 -0.02 1.40 16 6 C -0.15 -2.04 9.29 30.62 0.28 -1.75 16 7 C -0.19 -3.09 6.17 -11.54 -0.07 -3.16 16 8 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 9 C 0.55 12.72 5.77 87.66 0.51 13.23 16 10 O -0.56 -16.88 12.76 -3.03 -0.04 -16.91 16 11 N -0.71 -16.08 5.55 -466.79 -2.59 -18.67 16 12 C 0.20 5.47 6.10 85.63 0.52 5.99 16 13 C 0.32 9.53 7.01 138.76 0.97 10.50 16 14 N -0.54 -15.29 10.36 -300.70 -3.12 -18.41 16 15 C 0.36 9.48 7.83 84.83 0.66 10.15 16 16 O -0.47 -9.42 13.58 -88.23 -1.20 -10.62 16 17 C -0.21 -5.85 9.79 22.54 0.22 -5.63 16 18 C 0.18 6.15 6.18 42.44 0.26 6.42 16 19 C 0.20 7.53 6.61 85.63 0.57 8.09 16 20 N -0.74 -36.30 5.59 -347.19 -1.94 -38.24 16 21 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 22 H 0.09 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 25 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 N -0.52 -17.66 10.27 -176.23 -1.81 -19.47 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 1.72 6.57 -2.39 -0.02 1.71 16 34 H 0.04 1.10 4.88 -2.39 -0.01 1.09 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.22 6.72 -2.39 -0.02 1.21 16 37 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.57 5.80 -2.39 -0.01 1.56 16 39 H 0.41 7.96 8.46 -92.71 -0.78 7.18 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.43 4.34 9.06 -74.06 -0.67 3.67 16 43 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 46 H 0.37 20.13 7.66 -92.70 -0.71 19.42 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -71.86 389.84 -3.17 -75.03 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -1.13 Total: 38.28 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 6.34 Total: 20.47 kcal Atomic # 7 Polarization: -144.20 SS G_CDS: -9.17 Total: -153.38 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.24 Total: -27.53 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.86 -3.17 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656646631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.597 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds