Wall clock time and date at job start Tue Mar 31 2020 18:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47732 * 2 1 4 4 H 1.09005 * 110.45544 * 51.79998 * 3 2 1 5 5 C 1.54377 * 110.41328 * 289.39537 * 3 2 1 6 6 H 1.09006 * 110.32055 * 336.35888 * 5 3 2 7 7 N 1.46495 * 110.32665 * 98.46315 * 5 3 2 8 8 C 1.34779 * 120.00158 * 204.99828 * 7 5 3 9 9 O 1.21698 * 119.99972 * 0.02562 * 8 7 5 10 10 C 1.46671 * 120.00169 * 180.02562 * 8 7 5 11 11 C 1.37878 * 126.23583 * 179.97438 * 10 8 7 12 12 C 1.39840 * 107.08411 * 179.97438 * 11 10 8 13 13 C 1.35450 * 107.86563 * 0.02562 * 12 11 10 14 14 N 1.35530 * 108.87390 * 359.76797 * 13 12 11 15 15 H 0.96995 * 125.67901 * 180.26368 * 14 13 12 16 16 C 1.54258 * 105.06067 * 217.36371 * 5 3 2 17 17 C 1.54382 * 105.05754 * 359.97438 * 16 5 3 18 18 N 1.48553 * 104.59617 * 23.85263 * 17 16 5 19 19 C 1.46906 * 110.99694 * 200.96063 * 18 17 16 20 20 C 1.50695 * 109.47227 * 279.60581 * 19 18 17 21 21 O 1.21291 * 120.00070 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00111 * 180.02562 * 20 19 18 23 23 C 1.37098 * 120.00044 * 179.72109 * 22 20 19 24 24 H 1.08002 * 119.99929 * 0.28011 * 23 22 20 25 25 C 1.38953 * 119.99982 * 180.27340 * 23 22 20 26 26 N 1.31411 * 119.99946 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00119 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47370 * 89.99745 * 27 25 23 29 29 H 1.48503 * 109.47314 * 210.00010 * 27 25 23 30 30 H 1.48504 * 109.47120 * 329.99731 * 27 25 23 31 31 H 1.09000 * 109.47323 * 305.23917 * 1 2 3 32 32 H 1.09010 * 109.46747 * 65.22901 * 1 2 3 33 33 H 1.08992 * 109.47393 * 185.22901 * 1 2 3 34 34 H 1.09005 * 109.47358 * 239.99945 * 2 1 3 35 35 H 1.08997 * 109.46957 * 120.00184 * 2 1 3 36 36 H 0.96998 * 119.99906 * 25.00738 * 7 5 3 37 37 H 1.07997 * 126.45615 * 0.02562 * 11 10 8 38 38 H 1.08003 * 126.06482 * 179.97438 * 12 11 10 39 39 H 1.08004 * 125.56026 * 179.97438 * 13 12 11 40 40 H 1.09004 * 110.32016 * 118.89082 * 16 5 3 41 41 H 1.08998 * 110.32721 * 240.99724 * 16 5 3 42 42 H 1.09003 * 110.40555 * 265.07036 * 17 16 5 43 43 H 1.09005 * 110.40675 * 142.63465 * 17 16 5 44 44 H 1.09004 * 109.46954 * 159.60539 * 19 18 17 45 45 H 1.08997 * 109.47311 * 39.60794 * 19 18 17 46 46 H 0.97001 * 119.99897 * 359.97438 * 22 20 19 47 47 H 0.97002 * 119.99892 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5717 2.0122 0.8026 5 6 1.7667 2.1103 -1.3647 6 1 1.6693 1.3539 -2.1436 7 7 0.5535 2.9286 -1.2968 8 6 -0.1502 3.1848 -2.4174 9 8 0.2220 2.7359 -3.4856 10 6 -1.3645 4.0046 -2.3496 11 6 -2.1779 4.3457 -3.4094 12 6 -3.2147 5.1307 -2.8954 13 6 -3.0207 5.2532 -1.5605 14 7 -1.9025 4.5696 -1.2154 15 1 -1.5407 4.4924 -0.3188 16 6 2.9988 2.9997 -1.6298 17 6 3.9128 2.7949 -0.4025 18 7 3.5184 1.4698 0.1409 19 6 3.9158 1.3389 1.5492 20 6 5.3779 0.9823 1.6275 21 8 6.0251 0.8497 0.6103 22 7 5.9660 0.8098 2.8278 23 6 7.2948 0.4797 2.8989 24 1 7.8713 0.3625 1.9932 25 6 7.8998 0.2962 4.1363 26 7 9.1736 -0.0196 4.2044 27 14 6.9026 0.4985 5.7027 28 1 6.3033 -0.8068 6.0801 29 1 7.7892 0.9708 6.7965 30 1 5.8225 1.4923 5.4771 31 1 -0.3634 0.5929 0.8393 32 1 -0.3633 0.4306 -0.9332 33 1 -0.3634 -1.0233 0.0936 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8899 36 1 0.2567 3.2862 -0.4454 37 1 -2.0405 4.0597 -4.4417 38 1 -4.0258 5.5633 -3.4624 39 1 -3.6556 5.8029 -0.8813 40 1 3.5080 2.6800 -2.5390 41 1 2.7008 4.0450 -1.7111 42 1 3.7373 3.5766 0.3367 43 1 4.9598 2.7853 -0.7057 44 1 3.3247 0.5547 2.0221 45 1 3.7442 2.2840 2.0644 46 1 5.4483 0.9155 3.6412 47 1 9.5959 -0.1481 5.0682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656685628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:45 Heat of formation + Delta-G solvation = -12.473440 kcal Electronic energy + Delta-G solvation = -28766.225472 eV Core-core repulsion = 24756.949511 eV Total energy + Delta-G solvation = -4009.275961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64488 -40.20252 -38.82469 -37.80188 -34.71769 -33.91636 -33.45854 -31.82050 -31.57091 -31.09083 -29.53879 -27.67747 -26.68007 -24.23275 -23.54732 -22.55426 -21.34413 -20.84266 -20.53635 -20.33058 -19.34796 -18.97917 -18.33359 -16.73133 -16.19136 -16.11988 -15.56083 -15.05682 -15.01099 -14.88628 -14.55640 -14.45737 -14.09704 -13.94114 -13.72362 -13.61722 -13.30297 -13.12715 -12.98143 -12.71867 -12.62086 -12.47167 -12.15961 -12.04570 -11.68916 -11.50055 -11.43158 -11.22140 -11.12538 -10.80375 -10.66620 -10.61439 -10.32624 -9.98314 -9.56563 -9.41584 -9.35500 -8.70107 -8.62139 -8.19393 -8.15410 -6.31205 -3.82509 1.12043 2.37809 2.65150 2.77165 2.99546 3.04601 3.11281 3.12939 3.73053 3.87970 4.09007 4.26474 4.50910 4.55287 4.64057 4.80888 4.91648 4.96728 5.04592 5.06360 5.09112 5.18933 5.19073 5.30762 5.33848 5.47606 5.57503 5.61045 5.68113 5.71961 5.78517 5.84844 5.88682 5.90090 5.99895 6.05828 6.18147 6.20855 6.27526 6.31912 6.51928 6.90662 6.95831 7.00003 7.18232 7.58016 7.88642 8.14415 8.60416 8.95653 9.42354 9.84163 10.82065 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002278 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.592871 B =12291.223934 C =12551.592320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.057 3.943 4 H 0.052 0.948 5 C 0.149 3.851 6 H 0.106 0.894 7 N -0.723 5.723 8 C 0.589 3.411 9 O -0.524 6.524 10 C -0.056 4.056 11 C -0.106 4.106 12 C -0.212 4.212 13 C 0.022 3.978 14 N -0.541 5.541 15 H 0.415 0.585 16 C -0.133 4.133 17 C 0.038 3.962 18 N -0.475 5.475 19 C 0.032 3.968 20 C 0.455 3.545 21 O -0.554 6.554 22 N -0.594 5.594 23 C -0.303 4.303 24 H 0.120 0.880 25 C 0.040 3.960 26 N -0.882 5.882 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.277 1.277 30 H -0.271 1.271 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.391 0.609 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.171 0.829 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.278 10.192 -5.773 29.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.052 4.052 4 H 0.070 0.930 5 C 0.044 3.956 6 H 0.124 0.876 7 N -0.374 5.374 8 C 0.377 3.623 9 O -0.399 6.399 10 C -0.169 4.169 11 C -0.133 4.133 12 C -0.237 4.237 13 C -0.114 4.114 14 N -0.137 5.137 15 H 0.252 0.748 16 C -0.172 4.172 17 C -0.090 4.090 18 N -0.199 5.199 19 C -0.100 4.100 20 C 0.240 3.760 21 O -0.435 6.435 22 N -0.234 5.234 23 C -0.431 4.431 24 H 0.137 0.863 25 C -0.163 4.163 26 N -0.522 5.522 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.197 1.197 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.188 0.812 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.201 0.799 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.969 9.220 -7.270 28.500 hybrid contribution -1.021 1.055 2.945 3.290 sum -26.990 10.274 -4.326 29.201 Atomic orbital electron populations 1.21763 0.95775 1.01733 1.01421 1.21466 0.94838 0.94870 1.03657 1.22932 0.90019 0.96968 0.95309 0.93042 1.21789 0.82885 0.92772 0.98131 0.87580 1.46030 1.27575 1.54094 1.09676 1.17051 0.81542 0.79509 0.84216 1.90871 1.69033 1.51570 1.28444 1.20498 1.00112 1.08814 0.87484 1.21369 0.94233 0.99422 0.98276 1.20934 1.02356 1.06466 0.93906 1.22056 0.91046 1.00970 0.97358 1.42039 1.21986 1.40551 1.09141 0.74798 1.22757 0.95417 0.99539 0.99517 1.23181 1.01644 0.88931 0.95252 1.65005 1.07547 1.30754 1.16565 1.22112 0.97158 1.01162 0.89555 1.19565 0.87961 0.84243 0.84209 1.90569 1.64769 1.53966 1.34181 1.42206 1.11064 1.64181 1.05965 1.19421 0.83603 1.43859 0.96265 0.86275 1.25035 0.95765 0.97676 0.97786 1.69621 1.09940 1.46929 1.25735 0.86676 0.80097 0.78754 0.83835 1.19642 1.20227 1.19657 0.93283 0.92729 0.92433 0.90559 0.91283 0.77594 0.83443 0.83871 0.81207 0.89886 0.91100 0.94282 0.88440 0.89253 0.92972 0.79863 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.73 37.16 0.36 -0.93 16 2 C -0.11 -1.20 5.58 -26.73 -0.15 -1.35 16 3 C 0.06 0.64 1.95 -66.09 -0.13 0.51 16 4 H 0.05 0.49 7.60 -51.93 -0.39 0.09 16 5 C 0.15 1.66 2.40 -66.55 -0.16 1.50 16 6 H 0.11 1.39 7.14 -51.93 -0.37 1.02 16 7 N -0.72 -6.35 4.77 -53.77 -0.26 -6.60 16 8 C 0.59 6.50 7.79 -12.86 -0.10 6.40 16 9 O -0.52 -7.85 16.53 5.19 0.09 -7.77 16 10 C -0.06 -0.52 7.06 -81.98 -0.58 -1.09 16 11 C -0.11 -0.99 10.65 -39.11 -0.42 -1.41 16 12 C -0.21 -1.49 10.81 -39.98 -0.43 -1.92 16 13 C 0.02 0.11 11.89 -16.91 -0.20 -0.09 16 14 N -0.54 -3.09 5.99 -9.39 -0.06 -3.14 16 15 H 0.42 1.18 8.19 -40.82 -0.33 0.84 16 16 C -0.13 -1.63 6.79 -25.35 -0.17 -1.80 16 17 C 0.04 0.54 6.08 -2.18 -0.01 0.53 16 18 N -0.47 -7.19 4.56 -223.59 -1.02 -8.21 16 19 C 0.03 0.51 5.31 -4.98 -0.03 0.49 16 20 C 0.46 10.17 7.69 -10.99 -0.08 10.09 16 21 O -0.55 -14.78 15.29 5.55 0.08 -14.70 16 22 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 23 C -0.30 -8.51 10.16 -14.93 -0.15 -8.67 16 24 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 25 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 26 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 27 Si 0.88 19.18 27.74 -169.99 -4.71 14.46 16 28 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 30 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.51 7.54 -51.92 -0.39 0.12 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 35 H 0.07 0.79 7.18 -51.93 -0.37 0.41 16 36 H 0.39 2.33 7.51 -40.82 -0.31 2.02 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.17 0.34 8.06 -52.48 -0.42 -0.08 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 42 H 0.04 0.50 7.67 -51.93 -0.40 0.11 16 43 H 0.10 1.68 7.66 -51.93 -0.40 1.28 16 44 H 0.09 1.25 7.02 -51.93 -0.36 0.88 16 45 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 46 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -35.68 385.14 -8.58 -44.26 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.88 Total: 11.61 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.35 Total: 3.25 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.61 Total: -56.93 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.46 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.68 -8.58 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656685628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.788 kcal (2) G-P(sol) polarization free energy of solvation -35.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds