Wall clock time and date at job start Tue Mar 31 2020 18:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47732 * 2 1 4 4 H 1.09005 * 110.45544 * 51.79998 * 3 2 1 5 5 C 1.54377 * 110.41328 * 289.39537 * 3 2 1 6 6 H 1.09006 * 110.32055 * 336.35888 * 5 3 2 7 7 N 1.46495 * 110.32665 * 98.46315 * 5 3 2 8 8 C 1.34779 * 120.00158 * 204.99828 * 7 5 3 9 9 O 1.21698 * 119.99972 * 0.02562 * 8 7 5 10 10 C 1.46671 * 120.00169 * 180.02562 * 8 7 5 11 11 C 1.37878 * 126.23583 * 179.97438 * 10 8 7 12 12 C 1.39840 * 107.08411 * 179.97438 * 11 10 8 13 13 C 1.35450 * 107.86563 * 0.02562 * 12 11 10 14 14 N 1.35530 * 108.87390 * 359.76797 * 13 12 11 15 15 H 0.96995 * 125.67901 * 180.26368 * 14 13 12 16 16 C 1.54258 * 105.06067 * 217.36371 * 5 3 2 17 17 C 1.54382 * 105.05754 * 359.97438 * 16 5 3 18 18 N 1.48553 * 104.59617 * 23.85263 * 17 16 5 19 19 C 1.46906 * 110.99694 * 200.96063 * 18 17 16 20 20 C 1.50695 * 109.47227 * 279.60581 * 19 18 17 21 21 O 1.21291 * 120.00070 * 359.97438 * 20 19 18 22 22 N 1.34773 * 120.00111 * 180.02562 * 20 19 18 23 23 C 1.37098 * 120.00044 * 179.72109 * 22 20 19 24 24 H 1.08002 * 119.99929 * 0.28011 * 23 22 20 25 25 C 1.38953 * 119.99982 * 180.27340 * 23 22 20 26 26 N 1.31411 * 119.99946 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00119 * 0.02562 * 25 23 22 28 28 H 1.48499 * 109.47370 * 89.99745 * 27 25 23 29 29 H 1.48503 * 109.47314 * 210.00010 * 27 25 23 30 30 H 1.48504 * 109.47120 * 329.99731 * 27 25 23 31 31 H 1.09000 * 109.47323 * 305.23917 * 1 2 3 32 32 H 1.09010 * 109.46747 * 65.22901 * 1 2 3 33 33 H 1.08992 * 109.47393 * 185.22901 * 1 2 3 34 34 H 1.09005 * 109.47358 * 239.99945 * 2 1 3 35 35 H 1.08997 * 109.46957 * 120.00184 * 2 1 3 36 36 H 0.96998 * 119.99906 * 25.00738 * 7 5 3 37 37 H 1.07997 * 126.45615 * 0.02562 * 11 10 8 38 38 H 1.08003 * 126.06482 * 179.97438 * 12 11 10 39 39 H 1.08004 * 125.56026 * 179.97438 * 13 12 11 40 40 H 1.09004 * 110.32016 * 118.89082 * 16 5 3 41 41 H 1.08998 * 110.32721 * 240.99724 * 16 5 3 42 42 H 1.09003 * 110.40555 * 265.07036 * 17 16 5 43 43 H 1.09005 * 110.40675 * 142.63465 * 17 16 5 44 44 H 1.09004 * 109.46954 * 159.60539 * 19 18 17 45 45 H 1.08997 * 109.47311 * 39.60794 * 19 18 17 46 46 H 0.97001 * 119.99897 * 359.97438 * 22 20 19 47 47 H 0.97002 * 119.99892 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5717 2.0122 0.8026 5 6 1.7667 2.1103 -1.3647 6 1 1.6693 1.3539 -2.1436 7 7 0.5535 2.9286 -1.2968 8 6 -0.1502 3.1848 -2.4174 9 8 0.2220 2.7359 -3.4856 10 6 -1.3645 4.0046 -2.3496 11 6 -2.1779 4.3457 -3.4094 12 6 -3.2147 5.1307 -2.8954 13 6 -3.0207 5.2532 -1.5605 14 7 -1.9025 4.5696 -1.2154 15 1 -1.5407 4.4924 -0.3188 16 6 2.9988 2.9997 -1.6298 17 6 3.9128 2.7949 -0.4025 18 7 3.5184 1.4698 0.1409 19 6 3.9158 1.3389 1.5492 20 6 5.3779 0.9823 1.6275 21 8 6.0251 0.8497 0.6103 22 7 5.9660 0.8098 2.8278 23 6 7.2948 0.4797 2.8989 24 1 7.8713 0.3625 1.9932 25 6 7.8998 0.2962 4.1363 26 7 9.1736 -0.0196 4.2044 27 14 6.9026 0.4985 5.7027 28 1 6.3033 -0.8068 6.0801 29 1 7.7892 0.9708 6.7965 30 1 5.8225 1.4923 5.4771 31 1 -0.3634 0.5929 0.8393 32 1 -0.3633 0.4306 -0.9332 33 1 -0.3634 -1.0233 0.0936 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8899 36 1 0.2567 3.2862 -0.4454 37 1 -2.0405 4.0597 -4.4417 38 1 -4.0258 5.5633 -3.4624 39 1 -3.6556 5.8029 -0.8813 40 1 3.5080 2.6800 -2.5390 41 1 2.7008 4.0450 -1.7111 42 1 3.7373 3.5766 0.3367 43 1 4.9598 2.7853 -0.7057 44 1 3.3247 0.5547 2.0221 45 1 3.7442 2.2840 2.0644 46 1 5.4483 0.9155 3.6412 47 1 9.5959 -0.1481 5.0682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656685628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:44 Heat of formation + Delta-G solvation = -41.558298 kcal Electronic energy + Delta-G solvation = -28767.486686 eV Core-core repulsion = 24756.949511 eV Total energy + Delta-G solvation = -4010.537175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.23898 -41.18871 -40.15388 -39.18011 -36.07609 -35.53586 -34.34874 -33.74920 -32.58921 -31.83809 -30.21815 -28.71127 -28.02336 -25.87418 -24.44476 -23.39487 -22.30617 -21.57984 -21.42301 -21.14064 -20.94429 -20.18642 -19.71717 -17.83619 -17.61287 -16.95452 -16.70620 -16.55994 -16.25078 -15.95466 -15.60972 -15.39846 -15.14216 -14.93302 -14.72044 -14.62504 -14.53513 -14.29287 -14.19402 -13.96755 -13.62574 -13.44701 -13.17444 -13.04303 -12.98923 -12.77041 -12.50205 -12.39273 -12.38145 -12.01666 -11.98072 -11.86064 -11.58330 -11.48435 -11.24853 -10.43521 -10.24548 -10.22718 -9.93358 -9.40587 -9.16833 -8.39877 -6.00798 0.46423 1.29542 1.36623 1.45070 1.86071 1.90217 1.99029 2.24051 2.25042 2.36008 2.66246 3.14952 3.21731 3.34392 3.68138 3.89195 3.96847 4.03337 4.13579 4.24360 4.27182 4.32979 4.36216 4.42862 4.44034 4.50075 4.55088 4.55791 4.61386 4.84925 4.93548 4.97495 5.06372 5.13087 5.17166 5.23952 5.28951 5.33830 5.39224 5.54101 5.75047 5.84811 5.92532 5.94164 6.02115 6.42494 6.61642 6.63152 6.90773 7.11023 7.42131 8.01069 8.78040 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002278 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.592871 B =12291.223934 C =12551.592320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.068 3.932 4 H 0.089 0.911 5 C 0.158 3.842 6 H 0.081 0.919 7 N -0.703 5.703 8 C 0.590 3.410 9 O -0.575 6.575 10 C -0.080 4.080 11 C -0.129 4.129 12 C -0.232 4.232 13 C 0.048 3.952 14 N -0.525 5.525 15 H 0.431 0.569 16 C -0.126 4.126 17 C 0.041 3.959 18 N -0.509 5.509 19 C 0.046 3.954 20 C 0.452 3.548 21 O -0.608 6.608 22 N -0.593 5.593 23 C -0.326 4.326 24 H 0.052 0.948 25 C -0.019 4.019 26 N -0.937 5.937 27 Si 0.967 3.033 28 H -0.257 1.257 29 H -0.277 1.277 30 H -0.228 1.228 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.132 0.868 38 H 0.158 0.842 39 H 0.214 0.786 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.160 12.200 -1.942 34.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.041 4.041 4 H 0.107 0.893 5 C 0.053 3.947 6 H 0.099 0.901 7 N -0.354 5.354 8 C 0.380 3.620 9 O -0.455 6.455 10 C -0.193 4.193 11 C -0.157 4.157 12 C -0.255 4.255 13 C -0.089 4.089 14 N -0.123 5.123 15 H 0.271 0.729 16 C -0.166 4.166 17 C -0.087 4.087 18 N -0.233 5.233 19 C -0.086 4.086 20 C 0.240 3.760 21 O -0.492 6.492 22 N -0.236 5.236 23 C -0.455 4.455 24 H 0.070 0.930 25 C -0.217 4.217 26 N -0.578 5.578 27 Si 0.787 3.213 28 H -0.182 1.182 29 H -0.202 1.202 30 H -0.151 1.151 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.149 0.851 38 H 0.176 0.824 39 H 0.230 0.770 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.107 0.893 46 H 0.225 0.775 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.885 11.245 -3.400 33.044 hybrid contribution 0.526 0.438 1.586 1.727 sum -30.359 11.683 -1.814 32.580 Atomic orbital electron populations 1.21685 0.93721 1.02464 1.01921 1.21476 0.96532 0.94403 1.02504 1.22931 0.87529 0.97635 0.95963 0.89302 1.21477 0.83245 0.92241 0.97773 0.90092 1.45723 1.26335 1.53252 1.10138 1.17325 0.81930 0.79020 0.83770 1.90846 1.70477 1.53740 1.30400 1.20115 0.99986 1.10297 0.88887 1.21524 0.95610 1.00442 0.98077 1.21210 1.02416 1.06734 0.95145 1.22720 0.90117 0.98848 0.97250 1.41997 1.21721 1.39541 1.09009 0.72859 1.22663 0.95474 1.00554 0.97872 1.23059 0.99598 0.89517 0.96502 1.64852 1.10486 1.31537 1.16424 1.22009 0.91906 1.03879 0.90768 1.20927 0.90616 0.81612 0.82874 1.90556 1.66957 1.55529 1.36116 1.42015 1.09416 1.64703 1.07442 1.18972 0.85763 1.46158 0.94637 0.93005 1.26164 0.97076 0.96189 1.02305 1.69818 1.12635 1.47990 1.27354 0.85334 0.79023 0.80308 0.76627 1.18164 1.20198 1.15119 0.90813 0.93673 0.92092 0.93038 0.91223 0.75326 0.85052 0.82422 0.76984 0.92072 0.89623 0.91884 0.92680 0.86077 0.89253 0.77496 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.73 71.98 0.70 -1.31 16 2 C -0.11 -2.18 5.58 30.59 0.17 -2.01 16 3 C 0.07 1.32 1.95 45.07 0.09 1.41 16 4 H 0.09 1.14 7.60 -2.38 -0.02 1.12 16 5 C 0.16 3.38 2.40 45.89 0.11 3.49 16 6 H 0.08 2.20 7.14 -2.38 -0.02 2.18 16 7 N -0.70 -10.82 4.77 -442.26 -2.11 -12.93 16 8 C 0.59 12.67 7.79 86.44 0.67 13.34 16 9 O -0.58 -18.02 16.53 -4.34 -0.07 -18.10 16 10 C -0.08 -1.34 7.06 40.35 0.28 -1.06 16 11 C -0.13 -2.35 10.65 22.57 0.24 -2.11 16 12 C -0.23 -2.70 10.81 22.01 0.24 -2.46 16 13 C 0.05 0.30 11.89 83.48 0.99 1.29 16 14 N -0.53 -3.99 5.99 -183.62 -1.10 -5.09 16 15 H 0.43 0.31 8.19 -92.71 -0.76 -0.45 16 16 C -0.13 -3.08 6.79 31.49 0.21 -2.87 16 17 C 0.04 1.15 6.08 86.45 0.53 1.68 16 18 N -0.51 -14.67 4.56 -861.31 -3.92 -18.60 16 19 C 0.05 1.32 5.31 85.55 0.45 1.77 16 20 C 0.45 20.18 7.69 87.66 0.67 20.86 16 21 O -0.61 -34.15 15.29 -3.06 -0.05 -34.20 16 22 N -0.59 -27.55 5.09 -306.99 -1.56 -29.11 16 23 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 24 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 25 C -0.02 -1.07 5.50 84.93 0.47 -0.60 16 26 N -0.94 -56.73 13.96 21.66 0.30 -56.43 16 27 Si 0.97 38.10 27.74 68.60 1.90 40.00 16 28 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 29 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 30 H -0.23 -7.35 6.52 99.48 0.65 -6.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.74 7.54 -2.38 -0.02 0.73 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.26 7.95 -2.38 -0.02 1.24 16 35 H 0.07 1.38 7.18 -2.39 -0.02 1.36 16 36 H 0.41 3.15 7.51 -92.71 -0.70 2.45 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.21 -0.50 8.06 -2.91 -0.02 -0.52 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.09 1.82 7.95 -2.39 -0.02 1.80 16 42 H 0.06 1.45 7.67 -2.39 -0.02 1.43 16 43 H 0.05 2.00 7.66 -2.38 -0.02 1.99 16 44 H 0.12 2.78 7.02 -2.38 -0.02 2.76 16 45 H 0.09 1.98 7.64 -2.39 -0.02 1.97 16 46 H 0.39 14.66 5.76 -92.71 -0.53 14.13 16 47 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -88.55 385.14 -0.95 -89.50 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -1.03 Total: 31.78 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.69 Total: 13.17 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -8.39 Total: -122.16 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.12 Total: -52.30 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -88.55 -0.95 -89.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656685628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.943 kcal (2) G-P(sol) polarization free energy of solvation -88.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds